LOC110530217 (LOC106568867)


Basic Information

Item Value
gene id LOC110530217
gene name LOC106568867
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57558028 ~ 57572376 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985773.1
TCTATTGTGGTCAGTGACGCACCCCTTCTGAAGGCAGAGCCCGCATCAAACATGCAGCCTCCTGATTGGCTGAGGAGATTGTCAATTAAAAAGGGAGAGTTATCGGAAACAAATATGGCTACCCTGTCTGTTGGAGAGCCTCAAGAGATGGAAGTGGACCGGAAGGGAGAGTCAGAGGAGTCAGGAGATGATGAGACCAGGAGGAAGAGCATCAACGGGGAGGTAGACCTGAACCAGCCTCCTGCCACAGTTAAAGAGGAGTCTCCCGTTGATATGGATACCATAACCTTGGACCCAGAGGAAgagGATGTTGATCTTGTCCACTGTAGGATTGGGAAGATTGAGGGATTGGAGGTGTTGAGGAAGGCTAAGACGCTCTCTCTAAGGCAGAACCTGATCAAAAACATTGAGAACCTGGAGACGTTAGTGACTCTGAAGGAGCTGGATCTCTACGACAACCAAATCCGCAAACTTGAGAACCTGCAGACCCTCACAGAACTGGACCAGCTGGACGTGTCCTTCAATCTTCTGAGGAAGGTGGAGGGTCTGGAGCGTCTGACGGGGCTGAAGAAGCTATTCCTGCTGCACAACAAGATAAGCCACATCGCCAATTTGGACCATCTCACCGGCCTGGAGATGCTGGAGCTGGGCTCTAACCGCATCCGGgttgtcctgctgaaaggtgaactcatctcccagtgtctgttggaaagcagactgaagtttgcctgtgcttagccctATTGTTTATTTTATcataaactccctagtccttgccaatgacaagcatacccataatgcagccaccaccatgcttcaaaatATATCTTAAAAtctatatttttatttgatttaacctttttatttaaataggcaagtccgttaagaacaaattctaatttacaatgacggcctacccgggaacagtgggttaactgcctggttcaggggcagaacgacagatttgtaccttgtcagctcggggattcgatctagcaaacttttggttactggcccaatgctctaaccactaggctacctgccaccccaaaacaATTGACAGCGGTGGGATTGAATATGAagcgtggtactcagtgatgtgttgtggatttgccccaaacatagcgctttgtattcaggacataaagtttaaaaaattgccacattttttgcagttttactttagtgccttattgcaaacagaatgcatgtttttgaATGTTTTATTCTGCTTCattctttttactctgtcaattaggttagtattgtggagtaagtacaatgttgttgatctgtcCTTCATTTTTCTCTTATcaaagccattaaactctaactgttttaaagtga
>XM_036985772.1
TCTATTGTGGTCAGTGACGCACCCCTTCTGAAGGCAGAGCCCGCATCAAACATGCAGCCTCCTGATTGGCTGAGGAGATTGTCAATTAAAAAGGGAGAGTTATCGGAAACAAATATGGCTACCCTGTCTGTTGGAGAGCCTCAAGAGATGGAAGTGGACCGGAAGGGAGAGTCAGAGGAGTCAGGAGATGATGAGACCAGGAGGAAGAGCATCAACGGGGAGGTAGACCTGAACCAGCCTCCTGCCACAGTTAAAGAGGAGTCTCCCGTTGATATGGATACCATAACCTTGGACCCAGAGGAAgagGATGTTGATCTTGTCCACTGTAGGATTGGGAAGATTGAGGGATTGGAGGTGTTGAGGAAGGCTAAGACGCTCTCTCTAAGGCAGAACCTGATCAAAAACATTGAGAACCTGGAGACGTTAGTGACTCTGAAGGAGCTGGATCTCTACGACAACCAAATCCGCAAACTTGAGAACCTGCAGACCCTCACAGAACTGGACCAGCTGGACGTGTCCTTCAATCTTCTGAGGAAGGTGGAGGGTCTGGAGCGTCTGACGGGGCTGAAGAAGCTATTCCTGCTGCACAACAAGATAAGCCACATCGCCAATTTGGACCATCTCACCGGCCTGGAGATGCTGGAGCTGGGCTCTAACCGCATCCGGGTAATTGAGAATTTGGACTCGCTGTCCTCCTTGACAAGTCTGTTTCTGGGCACCAACAAGATCACGCAGTTTCAGCATCTGGAGGGCCTACACAATCTGACAGTCCTTAGcatccagAGTAACCGCATCACCAAGATGGAGGGTCTGCAGGGTCTGGTCAACCTGAAGGAGCTCTACCTGAGTCACAATGGCATCGAGGTCATCGAGGGCCTGGAGAACAACAAAAAGCTGACAACTCTGGACATCGCAGCCAACCGGGTGAAGAAAATTGAAAACATCAGCCATTTAACAGACCTACAGGAGTTCTGGatGAATGATAATCAGATAGAGAACTGGTCAGATCTGGATGAGCTGAAGAGCTCCAAGGCCCTGGAGACGGTGTACCTGGAGAGGAACCCCTTACAGAAGGACCCCCAATACCGCAGGAAGATCATGCTGGCGCTGCCCACCGTACGCCAGATCGATGCCACCTTCATCCGCTTCTAACTGGCCCACGCCCACCGTGCCACATCTCGTACCCCCACCTCAGTGTCCCCCACCTTCCACTCACCGTCCTTCCCCTGCCACTGCAAAATGGATCTCCGCTCACTGCACTAATTCACCACAGACATACTGATACACACAGACAAGGGTTCCCTTTGTATAACATGTCTACCTAAATACACACATTCTGACCATCACTTTTCTCCTTAacgtctcacacacaaacacgtgcacgcatgtacacactcactcacactcaccaCCTGACCGATGCTATTGTGTGACCGCTTATTAATTTATTCCCAGAATTGGACTGGAAATGGGCTGGTAGGAGTGGGGGCTGCAGGGATGTCAAAAAGAccccatctttccccactgtcctccctccctcttttctccttctctcctcccttttcctTTTGCATGTGGAGTAGGGAACGATTGCCCTGCCTGATTGGCCTTTGTCtggatgataaaaaaaaaagaaggcaggctgttttctctttgttattGAAATTGCACTGCACTTGGCAGAGAGGGGGGTGAGTGGTTTTTTAGGAAGGTCTACTACACTCAACAGATATCAAagtcttattttttttatattaaagAATTTAAAATGATcaaatgtgtttaaaaaaatacaaataatgtgGCCGTATGATACTTAGTTTGCCATAGGGATATTTAGAGCATCACAATGTTGGACTGCTTGCATATTGCAGCTGCATTACAGACACTGCCTCGTGCACGTGGTGTCTTGTTCAAAGTGAAGGCTTGAACTTAATTCACGCCCTGGCACATCAAAGAAGCGCACTCTTTGTGCTCTATCTGAAACTGGTCTGTCTCAGGCCAATAAGGCAAATGTTCTGAATGCATTGTCACCCGAAGGAACAGACCAGGGTTTTTTTTCATTGATTTCTTATAAAACATATTTGTTTTGAATGGTAATCATTCGGTAAACATCCCCAGGAGATCGTCTGCTTTTGATTGTAAATAATCTAATTCTTAGACTGACTCAACATCCTAATTCAAATGAATCTGCAGTCTGAGCTGTTAATCCATATGtcaatcttgctgctgtgaaATGCAACTAACGTTCAGTGATGGTGGTATTCAGCGCTTCTTTCTTTTCAGGCCATGACCCTCAAATGTTTTAAGATAATGTAAAGACAAATATGACAATCTGTTATGATATTTCTAAGTCAATAGCCCATGCATGTATGGAGTCACCTACAGTTGAACACTTACAGGGAAAGTTTAACAGAAGTGAACTGTTTGTGAACAGAAATGGGCTCCTATGACCTATTAACCTGGATCAGTGGAGTGTGTCTGAGTTAAGGTATGTAGAAGGGAAGGAGTGTTTGTGGTGTAAACCACTTTTAACCACATTGCTCAGGACCTTACTATTGCCAATCAATGGACCAACGGGCTCAGAATTtgcccctaaccacagatctaggatcagttaacCCTTCTGTACCCCCAATCAGATTTGAACTTTAATAGTGTAATGACCCCCCTATCAGTGGTTAGGGGAAAATGTATATTCCCACCTGCAGAGTGAAGGTGGCCCATACAACTGGGGCTTATTCAAGAGGGTGCAACATTTTAGAATGTTACAGATAAAAATGCAATGTATAGAATTTCAACTATTGACTCCCTTTGCCAAACAAGTTGGCAGTTCTATACATGACTTTTGTATCTGCCCCACTAGTCCCAGTCCCTCAGATGGGTTCATAAAACAATGCCACACAACTCACTTGTATTTTTTGCCTTGTTTTTAGTCAAGCTTGGTAGACTGTTCTTGAACTGAATGTATTATAAAATACTAAATAATAAAGTTACTTAAATTTA

Function

NR:

description
protein phosphatase 1 regulatory subunit 7

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K17550 PPP1R7, SDS22; protein phosphatase 1 regulatory subunit 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985773.1 False 1347 mRNA 0.45 7 57558028 57565135
XM_036985772.1 True 3006 mRNA 0.45 10 57558028 57572376
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Neighbor

gene id symbol gene type direction distance location
LOC110530213 LOC106568871 coding upstream 79173 57421244 ~ 57478855 (+)
car8 car8 coding upstream 196215 57339585 ~ 57361813 (+)
asph LOC106568874 coding upstream 427516 57108203 ~ 57130512 (+)
LOC110530207 ttpa coding upstream 471413 57081546 ~ 57086615 (+)
LOC110530206 LOC106599164 coding upstream 478583 57045780 ~ 57079445 (+)
LOC110530216 LOC106568865 coding downstream 275 57572651 ~ 57582193 (+)
eif4g1a NA coding downstream 25459 57597835 ~ 57625254 (+)
LOC118965660 NA coding downstream 50337 57622713 ~ 57622840 (+)
LOC118965680 NA coding downstream 50895 57623271 ~ 57623401 (+)
fam131a LOC106568863 coding downstream 60006 57632382 ~ 57641650 (+)
G725906 LOC106590568 non-coding upstream 4884 57552838 ~ 57553144 (+)
G725905 NA non-coding upstream 8010 57549790 ~ 57550018 (+)
G725895 NA non-coding upstream 18480 57539293 ~ 57539548 (+)
G725892 NA non-coding upstream 21564 57536238 ~ 57536464 (+)
G725886 NA non-coding upstream 28304 57524846 ~ 57529724 (+)
G725912 NA non-coding downstream 11883 57584259 ~ 57584527 (+)
G725949 NA non-coding downstream 105475 57677851 ~ 57678662 (+)
G725969 NA non-coding downstream 150468 57722844 ~ 57723061 (+)
G725907 LOC106581475 other upstream 2546 57554723 ~ 57555482 (+)
G725878 NA other upstream 42634 57513606 ~ 57515394 (+)
G725573 NA other upstream 573743 56983570 ~ 56984285 (+)
si:ch211-267e7.3 LOC106568906 other upstream 1839791 55710156 ~ 55724271 (+)
LOC118965533 NA other downstream 280636 57850799 ~ 57854417 (+)
G727161 NA other downstream 784663 58357039 ~ 58358245 (+)
G727348 NA other downstream 1074483 58646859 ~ 58674005 (+)
G728057 LOC100136012 other downstream 1408555 58980931 ~ 58981271 (+)
LOC110530248 crem other downstream 2188099 59748668 ~ 59768093 (+)

Expression

LOC110530217(LOC106568867) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
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LOC110530217(LOC106568867) Expression in each Bioproject

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LOC110530217(LOC106568867) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1500.
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Co-expression Network