LOC110530216 (LOC106568865)


Basic Information

Item Value
gene id LOC110530216
gene name LOC106568865
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57572651 ~ 57582193 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613104.2
ACGCAGCCATCCAGGCAAAGCTCGCGAGTACAGAACGGCAGTACGCACGCGCAtgatttgtgttgttgttggtggcgGTAAGATGGCGGCGCTCGGGGACGCATCAACTCCGGGGGTGAATGGGTTAATACAACAGTTCACATCTATTACAGGTGCCACAGAGAGTGTGGGGAAGCATATGCTAGAAGCATGCAACAACAATCTAGAAATGGCAGTGACCATGTTCCTGGACGGAGGGGGGATCGCAGAGGAGCCCAGCACCAGCTCCAGTTCAGCAGGGGCATCCAGCAGCAAAGCTCCCCCCGCAGATGACGAAGTGCGGGCGCCCATCCCTCAGAAGCAGGACATACTGGTGGAGCCAGAGCCTATGTTTGGAGCGCCAAAGCGACGAAGACCTGCCCGCTCCATATTTGACGGTTTTAGGGACTTCCAAACAGAAACCATCCGCCAGGAGCAGGAGCTGAGGAACGGCAGTGCGGCGGACAAAAAACTCAGCACCCTGGCGGATCTGTTCCGGCCCCCCGTCGAGCTCATGCACAAAGGCAGCTTTGAGACGgcGAAGGACTGTGGTCAGCTGGAGAACAAGTGGCTGATGATCAACATCCAGAATGTGCAGGACTTTGCCTGCCAGTGTCTCAACAGAGACGTGTGGAGCAACGACGCGGTCCGGACCATCATCAGGGAGCACTTCATATTCTGGCAGGTTTACCACGACAGtgaagagggacagagatataTCCAGTTCTACAAGCTCAACAAGTTTCCCTATATCTCCATTTTGGACCCCCGGACTGGTCAGAAGATGGTGGAGTGGAACCAGTTGGACGTGGCTTCGTTTCTTGAACAGGTGACGGGCTTCCTGACGGAACATGGCCAGCTAGACGGCCCGGCATCCAGCCACCCGCCACCTGCCAAACGCGCCCGCTCTgagaGTCTGATAGACGCCAGTGAGGACAGCCAGTTGGAGGCAGCCATCCGAGCCTCTCTCCAGGAGACccattatgagtcgtcctccgcCCCCGACCTCCCTGACTCCCCCCACTCTGCAGATGCAGACTCGGATGGAGACTCCGAAGCAGAACCCTTCTCTGACAGCGAGGGCCTAATCTCTGTTGACGGCTCGGACAACGAGACAACAGAACCCCGGGAGGGCAGCTCCTACTCCATGGGCGGACACACCCCTCCAGGACCAGCCCCTCCCACTTCTGCAGCCGCAGCCCCCCAGCCCCCGCCACGGCCAGACAGTCCCCCGGCCCGTCACAGGAAGTCCCCCCACAAAGAGAACAGCCACAGGAAAGAGGAGAGCAAAAAGAACCACTTGGAGCCTCCGGCGGCCACCCCGGCCCGCTCCCAAGCCGACCCAGACTCAGAGCATCGTTCTGGGGAGAACCATCGCACCTCAGCTGGCCAAAGCTCCAGATCTGTTAAGACGGAAACCTCCGACCTCGACTGCCTTGATGACAATGGTCCCAAGGCCAGACTGATGCTGCGCTATCCAGATGGCCAGAGAGAGCAGATCGCCCTATCGTTCAAGGCTAAGCTTATGGCTCTGGTGAGACACGTCCAGTCGAAGGGTTACCCCAATGAACGCTTCGAGCTCGTCACAAACTTCCCCCGGCGGAAGCTGGCCCACTTGGACTATGACATCACACTGCAGGAGGCGGGGCTATGTCCACAGGAGACTGTATTTGTGCAGGAGAGGAACTAAGCCCCTGTTTTTTCTATCTCTTCAGGCCACACCCATATCACCAATTCCCCAGGAGGACGTTACAGACTGCAACCTTTTTGTTCTTTTGGAACAGTGGATGGACTCCATTATCCATCATTCGACTGGGAGGAAGCTGCTGGCTGTGTACTTTGTTAGAGGGCATTTTGTTCATCGTCAATTACCGAAGGCATTCTATTCTGATTTTAGTTTTATTCTGAGGTAATAAACCAATCGGAGTAGAATACATTAGAGATACCGTTAGAAATAAGCTGAGGGCCCGGATAATGATCAGAGCTGGCATCAGAGTTAGCAGACAAAATACTTTTATCCCCTGAGTTGTTAATACTTATTTTTTGGAGTCATGGACACCTACAGCCAGGTAAAGGAGGGGCTTGAACTCTGACCCTGAGCGCCGATGGGTCCCAAATTTGCTCTTCTCCGCGTTGTTTGGGCGAGGAGCTTTTGCAGTAGTGACCGTGAGAAAGGGGGTGACTTTGAATATGGGAATCAAtgaggaggggaggtgagggaTTTTTGGGGAGAGGGTGAGGTGTCCTTAACTGTCAACCTGCACTGTACAGGGGTGGTGTAGCGATTGACATGTAGTCTAGTTTTTTTCTtatttcattcattttttttatatgCTGCCCCATTTCCAAGAAAAGATGCTGATGCTTAAATATAATCATCAAAACAAAGGGAACTTTGGCTTGTTTGTTCTATTCaatttctaccatgttgtgtatCTGCAATCTGTCTAAATTGTGACCACGAGCTCAGAAGTATAGTTTTGGTGATGATGCATTGAAAATGGCCACAAAGAACCCCAAATTGACCCCTTGAATCTACAATATCACTCAGGTATTTCTTGGTACCCCCGCCCCAATGACCTGAAGGATCTTGTGTAAACAATGGGATGTGGTATTATCACTCTTTCTAGCCCAGAGCTGTTAATTGTTGGTCCTGGAGGGCCAAAACACTTCTGcttttcatcctctccttctaatcagggactaattcagacctgggacaccagagtggtatacttaagcaataaggcacctcgggggtttgtgatgtatggcaatataccatggctaagagtTGTTCTCTGTCCGACACAACGCTGTGTGccaggacacagcccttagccgtggtatattggccatataccacatatCCCGGAGGTGCCTTATtggtattataaactggttaccaacacaactaaagcagtaaaaatacatgttttgtcatacccgttgtatatgtctgatataccactgctgtcagccagtcagcattcagggctcaaaccacccagtttatagtacaaagcaagctagatctactcaggctttttaaaagctagccagcttcagttTGCTTCACATTCAAGGTCAGGCTTTATCCGTACTACAAAGGTGGATATTTCTCGTCAGCCTCGCACGTGGATAGTCGAACgctgaactcttcattgagacaatgttGAAACATCGATCCATCGGCGAGTCAGTGCCACATTTTACATTTTGTGGCGCAATGAAAGAAAAGTCATCTTGTGAATTCAGCAGGCTATGGTGTGAAATAGGCTTTTAGAAGTGACGTCTATATTTTATGGACATctttggtgtgcttatcaatgcacGAGCACCTTTTCCCCACTCCAATCGCTCCTTCTATCTGTGGAACAGCTTGTTGCATTGTGGCCATAGACAAATAATCCATAGAATGGTTTTTGAACCTCTAACCCTGCCAGtttgactgttaaactcatgggtacactagcaATGGCTGCCAGTCTTGACTTGAATGGGTACTGCCATCCTATGGATTTTATGTCTATGGTTAGTTGTGGCTTTGGCAAATTTTTAAATCCAATTGGGCAGAAAAACGTACAGTTTGGAAACCAAATgctgtcattactaaatgtgtaatgtgataggtattttaatattacaattttttttaacacaacatttgattaataaaatatttaatcagTTGTCTTTCTCAAAAGAAAGGGATGATCACACAATATTTGAGCGAGGGAGGGTATCTAATTTCATTGGTACTCAAGTTATGGCTCAGACACTATTAAGGATCGATTGAGTTAGCCTGCCCCAGAACAGGTTGGTTCTAAAAGGTTTGTTGCCTTTgaaatttacctggctaaaacGTGAGCCACTTTCCTGGTATCGGTTATCCCGAGTTGAATTTAGAATTGACCAAAGTTATCTGGCTATCTCCTCTAACCTGATTCATAGTATAGGACTCACCTATCTACCAGGTAGTATGATCTAGCCCAGCAGATGGTTGGCGAGGGGGAGCTGTTACAACAACTAATATCTATGTAGTCTAGTCAGATATTAGAGGGAGAGATAACAAGTAGTTTGGGATTGGGACCATGTACAATATTGCTAATCTAACTTTGACCCTTATTCATAGTTTGGATTTGTCTGTCACAGGGTTCCTCAACTTTGCAGTAAGCTAAGAATCTTAACAGTGGGGAGATATTAATCTGTTGAGTTCTGATCTGAGTCAGTAGTTCAACATGGGGTCTTGTTGCATACGACTGTCTTGAATAAATGTTGGCGTATTTGTATGGTGATTT
>TU824620
CAAGTTATGGCTCAGACACTATTAAGGATCGATTGAGTTAGCCTGCCCCAGAACAGGTTGGTTCTAAAAGGTTTGTTGCCTTTgaaatttacctggctaaaacGTGAGCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613104.2 False 4319 mRNA 0.48 11 57572651 57582193
TU824620 True 111 lncRNA 0.43 1 57581656 57581766

Neighbor

gene id symbol gene type direction distance location
LOC110530217 LOC106568867 coding upstream 275 57558028 ~ 57572376 (+)
LOC110530213 LOC106568871 coding upstream 93796 57421244 ~ 57478855 (+)
car8 car8 coding upstream 210838 57339585 ~ 57361813 (+)
asph LOC106568874 coding upstream 442139 57108203 ~ 57130512 (+)
LOC110530207 ttpa coding upstream 486036 57081546 ~ 57086615 (+)
eif4g1a NA coding downstream 15642 57597835 ~ 57625254 (+)
LOC118965660 NA coding downstream 40520 57622713 ~ 57622840 (+)
LOC118965680 NA coding downstream 41078 57623271 ~ 57623401 (+)
fam131a LOC106568863 coding downstream 50189 57632382 ~ 57641650 (+)
LOC110530222 LOC106568862 coding downstream 114821 57697014 ~ 57700551 (+)
G725906 LOC106590568 non-coding upstream 19507 57552838 ~ 57553144 (+)
G725905 NA non-coding upstream 22633 57549790 ~ 57550018 (+)
G725895 NA non-coding upstream 33103 57539293 ~ 57539548 (+)
G725892 NA non-coding upstream 36187 57536238 ~ 57536464 (+)
G725886 NA non-coding upstream 42927 57524846 ~ 57529724 (+)
G725912 NA non-coding downstream 2066 57584259 ~ 57584527 (+)
G725949 NA non-coding downstream 95658 57677851 ~ 57678662 (+)
G725969 NA non-coding downstream 140651 57722844 ~ 57723061 (+)
LOC110530223 per2 non-coding downstream 184633 57766651 ~ 57798129 (+)
G725907 LOC106581475 other upstream 17169 57554723 ~ 57555482 (+)
G725878 NA other upstream 57257 57513606 ~ 57515394 (+)
G725573 NA other upstream 588366 56983570 ~ 56984285 (+)
si:ch211-267e7.3 LOC106568906 other upstream 1854414 55710156 ~ 55724271 (+)
LOC118965533 NA other downstream 270819 57850799 ~ 57854417 (+)
G727161 NA other downstream 774846 58357039 ~ 58358245 (+)
G727348 NA other downstream 1064666 58646859 ~ 58674005 (+)
G728057 LOC100136012 other downstream 1398738 58980931 ~ 58981271 (+)
LOC110530248 crem other downstream 2178282 59748668 ~ 59768093 (+)

Expression


Co-expression Network