LOC118965533


Basic Information

Item Value
gene id LOC118965533
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57850799 ~ 57854417 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985787.1
TTCAAAGACGAAATTTGTCACAAATGCAGTAGAAGGGGGCACATTCAAAGAGCATGCAAAGCAAAATTCAGTCACAACAGTAAAACTGAGAAAATTAAAGGGTTGGTGAATGCACTAGCAGAGAACAGTGGCAGTGATTCAGATGAACGATTAATTGGTACAATGGAGTTAAACACAGTGACTTCTCCCAGCAGTAGCATAATATGGGTGACACCAGATATCGAAGGCAAACCCCTCAAAATGGAGCTGGACACAGGATCTGCAGTGTCTATAATTTCCACTACTGTCTACAATGAGCACTTTAAGGCTATCAAGCTGAAGAACACAAATGTGTTGCTGAAGACATACTCAGGAGAGAGATTGAGCCCAATGGGGGCGTTGCAGGTCAGAGTGCATTATGGGGGGCAAACACAGCAGTTACAGCTAGCTGTATGTGGTGCCTGGAACTGGCCCCCCATTATTTGGCAGGGAATGGCTTTCAAAAATAAAGCTGAATTGGTGTGACTTGAAAATGCTCCACACATTCCAGTCCAAAGAGAAAGGCACAGACCAAACACTGGAACACTTGCGGAAGAAATACAACACAGTTTTCAGTGATCAGATGGGAACAGTAAAAGGCTTCACAGCAAAACTTGTACTAAGAGATGACGCAACCCCGAAATTCTGCAAAGCCAGATCTGTTCCATACTCCCTGAGACCAAAGGTGGAAGCGGAAATCGATCGCTTGCAGGATACAGGGATCCTGACGAAAGTGGACAGAAGCGAATGGGCCACACCCATAGTTCCTATTGTGAAGAAAGACGGGTCTGTTAGAATGTGTGGGGACTTCAAGGTAACTGTGAATTCAATGTTGCATGTGGACCAATACCCCCTACCACGTCTGGATGACATCTTTGCTGCACTAGCTGGTGGGAAACACTTCAGTAAAATCGATCTGAAACAGGCTTACCTGCAGCTACCGGTTGAAGAGAGTTCCAAACACTACctgacaataaacacacacaaaggtcTATACAGGTATAACCGCCTGGTTTTTGGCATTGCATCAGCCCCAGCCATTTGGCAACGAACTATTGACCAGATTTTGCAAGGAATCCCAGGAACCCAGTGTATCCTGGATGACATGATCATAACAGGACGCACCGACAAAGAGCACCTGGCTAACCTGGAAGAGGTCCTGAAAAGACTGAAAGAGTATGATCTACAGGCAAACTTAAAGAAGTGTGAGTTCTTCAAAGACAAGATTGTCTTCTGTGGACATGAGATTGACTGCAATGGATTGcacaaaacacaggacaaaatCGAGGCAGTGGTACAGGCACCACGACCACAAAATATCACAGAAGTAAGATCTTTCACGGGACTGATCAATTACTACAGAAGATTCCCCCCAAACCTTTCAGCAGTACTCCAGCCTCTAAATCAGCTCCTGGAAAACAATAGGACATGGCGGTGGACAGAGCAGTGTGAAAATGCATTTCTGGAGGCAAAACGGCTCATAACATCTGAACAGGTCCTGATGCATTACGACCCTGAAATGCCAGTGAAGTTGGCTTGTGATGCGTCCCCTTATGGATTAGGGGCAGTCctttcacacacactgaaagatggGTCAGAGAGGCCAGTTGCATTTGCGTCACGAACATTGAATGATGCAGAGAAAAACTACTCACAAATCGACAAAGAAGCACTGGCACTAGTGTGGGGCGTCAAGAAATTCCACGCATACCTATATGGCAAGCGTTTCACACTGGTTACAGATCACCAGCCGTTGCTTTCCATTTTCAGTCCAAAGAAAGGCATTCCGGCAATGACAGCAGCCAGGTTACAGCGATATGCCCTGTTCCTTGCCAGTCATATGTATGACATTGAGTTTAAGCCGTCATCCCTCCACACAAATGCAGATGGATTATCCAGACTGCCGTGtacaagagaaagacaaaggagggtGGATGCAGTGGACATGTTCCATACCGCTCAGCTCGAGGCCCTACCTGTCACAAGCACAGTTATCAAACAGGAGACAAGGAAAGATGTGACCTTGTCAAAAGTGTACACCTACACCATGTCAGGATGGCCAGCTACTGGCAGAAAGGAGCTGACTCCGTATTTCCAGTGGAGAAACGAAATTACAACGTACCAAGGATGTTTGATGTGGGGAATGAGAGTCATGATACCCCAGAAATGCCAACATCTAGTCTTGCAGCAACTACATGAAGGTCATGTTGGAATTGTCAAAATGAAGCTGCTCGCAAGGAGCCACTTCTGGTGGCCAGGTCTGGACCAACAGATAGAAAATATGGCAAAGAACTGTAGTGGATGTTTGGAAACCCTTCACATGCCTGCTCCTGTCCCAGTCCACCCATGGGAATGGCCCGCAGAGCCATGGCAGAGAATTCATGTGGACTACGCTGGTCCTTTTGAAAAGCACATGTTTCTGGTTATAGTTGATGCCCATTCCAAATGGCCAGAGGTGTTTTGCACTGACTCCTCCACCTCAGCTCAGACGATAGAGTGTCTCAGAACAACGTTTGCACGCTTCGGTTTGCCACTGCAGCTGGTAAGTGACAACGCGCAAGCTTTTGTAAGTGACGAGTTTACAAGATTCATGTCAGTAAATGGAATCAAACACTCAACCTCAGCTCCGTACCACCCTGCCACCAATGGGCTGGCAGAATGCTTTGTGCAAACCCTAAAGCAAGGACTCCGTGCAGCAAAACGAGACGAAGGGACTTTGCAAACAAAACTGGCCAAGTTCCTGGCCTCCTACCGAAACACCCCACATGCCACGACAAATGAAAGCCCAGCCGCACTGATGTTCGGGAGGCCTCTCCGCACACAGCTGGACATCATGAAGCCAAACAGGCATAATGAAGTGCTGAACAAACAAGCCAAGATGCTCTCCGGTGGCCGGGAGCGCCATCTCCAAACAGGACAGGAAGTGATGGTGCGAGACTACAGAAGAGGAGGGAAATGGACAAGAgggaccgtacacacacacaaacgggacCCAGAACTTACCAGGTTCAAGTGAGCCCAGACATAATGTGGCGGCGTCACATTAACCAAATGCATTCCAGGGAAAACAGCACAACAATCGAGAGAGAACAGGCGCAGAGAGCTCCTGAGAGTGACACACAGGGAACTGTAGAGGACGGTGGGGCAGTAGAGAGACCCCAGGCTGAAAGAAGGGAACGTGTTGATGAAGGTGCTGCTATAGCAGACGCTATAATGGAACAAGCACACACTGAGGATGTTCAGGAGCCTCCAGACAATCTGAGGCGCTATCCAGAACGAAGGCACCGTCCACCAGACAGACTAGAcgtataaacaaacaaacaaaaactaaCTGTTCAAGTTCAAATTAAAAGATGCAAAATAACTACAACAAGTTCTGTGAAATGTTTCAGTTGTGGTTTGGTAAAAGTAACTCTGATTGTATAAGAGAAGGaatgttatgttctgttaattactgatgtcccctttaaggatggaGCACCCTTGGTCATGCGTATTattgttctatgttattctggtactaactagtttgagtaaatgtgaagctccagttcaattgcttgtattccgagtctttcttattacataaataagtactaag
>TU824799
ATGAAGGTCATGTTGGAATTGTCAAAATGAAGCTGCTCGCAAGGAGCCACTTCTGGTGGCCAGGTCTGGACCAACAGATAGAAAATATGGCAAAGAACTGTAGTGGATGTTTGGAAACCCTTCACATGCCTGCTCCTGTCCCAGTCCACCCATGGGAATGGCCCGCAGAGCCATGGCAGAGAATTCATGTGGACTACGCTGGTCCTTTTGAAAAGCACATGTTTCTGGTTATAGTTGATGCCCATTCCAAATGGCCAGAGGTGTTTTGCACTGACTCCTCCACCTCAGCTCAGACGATAGAGTGTCTCAGAACAACGTTTGCACGCTTCGGTTTGCCACTGCAGCTGGTAAGTGACAACGCGCAAGCTTTTGTAAGTGACGAGTTTACAAGATTCATGTCAGTAAATGGAATCAAACACTCAACCTCAGCTCCGTACCACCCTGCCACCAATGGGCTGGCAGAATGCTTTGTGCAAACCCTAAAGCAAGGACTCCGTGCAGCAAAACGAGACGAAGGGACTTTGCAAACAAAACTGGCCAAGTTCCTGGCCTCCTACCGAAACACCCCACATGCCACGACAAATGAAAGCCCAGCCGCACTGATGTTCGGGAGGCCTCTCC

Function

NR:

description
uncharacterized protein K02A2.6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985787.1 False 3619 mRNA 0.47 1 57850799 57854417
TU824799 True 621 TUCP 0.50 1 57853012 57853632

Neighbor

gene id symbol gene type direction distance location
LOC110530227 LOC106568858 coding upstream 39372 57805385 ~ 57811427 (+)
LOC110530223 per2 coding upstream 52670 57766651 ~ 57798129 (+)
LOC110530222 LOC106568862 coding upstream 150248 57697014 ~ 57700551 (+)
fam131a LOC106568863 coding upstream 209149 57632382 ~ 57641650 (+)
LOC118965680 NA coding upstream 227398 57623271 ~ 57623401 (+)
trnap-agg-8 NA coding downstream 61583 57916000 ~ 57916071 (+)
trnai-aau NA coding downstream 68133 57922550 ~ 57922623 (+)
trnam-cau NA coding downstream 73396 57927813 ~ 57927885 (+)
trnag-ucc-2 NA coding downstream 73958 57928375 ~ 57928446 (+)
LOC110530231 LOC106568853 coding downstream 77878 57932295 ~ 58136178 (+)
G726031 NA non-coding upstream 14249 57831389 ~ 57836550 (+)
G725969 NA non-coding upstream 127738 57722844 ~ 57723061 (+)
G725949 NA non-coding upstream 172137 57677851 ~ 57678662 (+)
eif4g1a NA non-coding upstream 250037 57597835 ~ 57625254 (+)
G726045 NA non-coding downstream 3809 57858226 ~ 57860539 (+)
G726051 NA non-coding downstream 11761 57866178 ~ 57867407 (+)
G726053 NA non-coding downstream 20172 57874589 ~ 57876276 (+)
G725985 NA non-coding downstream 22408 57876825 ~ 57877752 (+)
G725988 NA non-coding downstream 39393 57893810 ~ 57894357 (+)
G725907 LOC106581475 other upstream 295317 57554723 ~ 57555482 (+)
G725878 NA other upstream 335405 57513606 ~ 57515394 (+)
LOC110530213 LOC106568871 other upstream 373070 57421244 ~ 57478855 (+)
G725573 NA other upstream 866514 56983570 ~ 56984285 (+)
si:ch211-267e7.3 LOC106568906 other upstream 2132562 55710156 ~ 55724271 (+)
G727161 NA other downstream 502622 58357039 ~ 58358245 (+)
G727348 NA other downstream 792442 58646859 ~ 58674005 (+)
G728057 LOC100136012 other downstream 1126514 58980931 ~ 58981271 (+)
LOC110530248 crem other downstream 1906058 59748668 ~ 59768093 (+)
G730206 NA other downstream 3186151 61040568 ~ 61042129 (+)

Expression


Co-expression Network