LOC110530231 (LOC106568853)


Basic Information

Item Value
gene id LOC110530231
gene name LOC106568853
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57932295 ~ 58136178 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985801.1
GAGAGTGAACGCGTGTGCATAGCTTCGGAGAGAAGCGCATGGCTTGGGGGAGAGAAGTATGCACGCAGTCGAACAGCGCCTGTTGAGTGTGGGACGTCTACCAATCTTCGTCTACTACAATaccgtctctcccctcctcaagacAAGATCATATAGGCTCAGTGTGGAAGGGCCTTTATGCATTAAAACCAATAATGTGAGAACCCGATGCAGACCTCGTGTCATGGACGTTTAATTGTAACAACAGCTCCATTTTATTTGTGTCGTACATTTTCTTAACCGGCGGTGAAATCATCGATTTACACTAACCTACTGATACCTGGATTGAGATGCGGCAATGTTCCGAGCAATATGCACACGTGTAAACTTCTGCTGGATTTGGCTGGCAGTTCTGTTTCTGCTGAAAGTAGAGGATGTTGGCGCGTACAGCTGTCATGAGGTGAAGACCGCTTTCCAGGTGCGACAGATCGGTCCGCTGAAGTGGGTACCGGAGACACCTGGaacagATGTGGACCTGTTGGTGTGTAAGCACCAGGGCCCGTCCTGCTGCACCCGCAAGATGGAGGAGAGCTACCAGGAGGCGGTGAGACGAGAGACCCTCCAGAATGTCCGCTCCTACAGCTTCGAGCTGAAGTACCTCATCTCCGGCCACGCCACTGCCTTCCAGGacaCCTTCCAGTATCTGCTCTCCTTCTCCCAGGGCCACCTATCCTCCCTGCTAGAGGACACATACTCGCCCCTCTCCCGGGAGGCCCTCCCCCATGTCAACGCcctgttctcctccctctccctctacatccGCGGACACAACCTCTCCCTCGAAGCTGCCGTGGCCCGTTTCCACGACAACCTCTTCCCGCTCGTCTACGGGCGCCTGGTCAACCCGGGCGTGGGCGTCCAGGGTGGTTTGTCCGGTGAGCGGGGCGAGTGTCTCCGCGCCACACGGCAGGACGTCAACCCATTCGGCCCTCACCCCGAAATGCTCGCTCAGGAATTGGGGCGCACTCTGGGCGCCGGGCGAGCCTTATCCCTGGCCCTCGCCGAGGGCACCGAAGTCATGAACGCCACCGAACACGTTTCCTTCACCAAAGAGTGTTTACGGGGCTTGACCAAGATGCAGTACTGTTCGCACTGCCGTGGGCTGACGCTGATCAAGCCGTGCGTGGGCTACTGTCTGAACGTGATGCGCGGGTGCTTGGCGAGCGTGGCCGAGCTGGACGGGCCGTGGCGGCGGTATGTGGCGGCTCTGGAGGAGCTGACCAATGCTGTGGCCGGACAACACAGCCTGGAACTGGCCCTGCTTGGAGTCAGGGGGCACGTGAATGAGGCCATACTACACGCTCAGCTCCATGGGCCCACGCTGACCGCTACGGTGGACAAAGTGTGTGGTCGGTCAGCCAAGGAGCCCCGCACCAGCGTCCACCCTGACCCCGCCCCGGAGGTCACGACCTCCACGGTGACATCATCGACCGTCCCTCCCTCTGaccccccctccatccccccaccAGAACAGCTGATGGGACAACTTGCCCACCTGAGGAGTTCATTCCCCCTGAAACCCTCCAAGAACGATAAACCTAGAAGTCTGAAAAAGATCTCTAGGGAGTTTCTGAGCTACATCCAGCGCTATAAGTCATTCTTTGCCGTGCTTCCGGAGATGctgtgtgagggagagatggtggtGGACGACTTTACCTGCTGGAGCGGAGACGACGTGGTGGAGAGttatacAGGCAGAGTGGTGGGGAACGGTCTCCAGGCCCAGAAGCAGAACCCCGAGGTCAAAGTTCGCAGCCCAAACCCCGAACTGGCCGAGGTGAAGGAGAGGCTGGAGCGCTTCAACCAGGAGATTCAGGACATGCTGCCAGGGCTGGGCCAGAGCGAGTCCTGGGGGGAGCTGGGTAGTGGCGACACAGAGGATGGCAGCGGAGACTGTGACGATGAAGACGGGTGTCAAGGGTCTGGAACGGGGACGGTCAGGAGCTtcaGTGCCAACACATGGCCACAGCTGCTACGGAGCTTAACTCTAAATCCTCCAACCTGTGGAAGGCAAAGAAACAAAGTGTTCTCAAAcaatcctccctctgtccctcactgATACGATTTATAGTctccctgatacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaacagagcctTGGGCAGGCCTGGGGAGGATTGCGAAGGGATTATTGAGAAGACAGAAAACCTGATGACTTTGATTTTCTCATTTGCTACCTAATCATCCAACTgactcctcctcacccctccaccctcctcacacctccaccctcctcacccctccacccTCCGCACACCTCCACCCACCTCTATTATACAGTGTGCTGGACTGTCCAGTCAACTATTATAGAGGTGTGGAGATATTTGATTTGTGGCACAGGAGAGAATGTGTTGTTATGGGGTGGAGGTCAGGACTCTtcctcttttcatctctctctctctctctctctctctctctctctctctctctctctctctctctctctctct
>XM_036985799.1
AGTGAACGCGTGTGCATAGCTTCGGAGAGAAGCGCATGGCTTGGGGGAGAGAAGTATGCACGCAGTCGAACAGCGCCTGTTGAGTGTGGGACGTCTACCAATCTTCGTCTACTACAATaccgtctctcccctcctcaagacAAGATCATATAGGCTCAGTGTGGAAGGGCCTTTATGCATTAAAACCAATAATGTGAGAACCCGATGCAGACCTCGTGTCATGGACGTTTAATTGTAACAACAGCTCCATTTTATTTGTGTCGTACATTTTCTTAACCGGCGGTGAAATCATCGATTTACACTAACCTACTGATACCTGGATTGAGATGCGGCAATGTTCCGAGCAATATGCACACGTGTAAACTTCTGCTGGATTTGGCTGGCAGTTCTGTTTCTGCTGAAAGTAGAGGATGTTGGCGCGTACAGCTGTCATGAGGTGAAGACCGCTTTCCAGGTGCGACAGATCGGTCCGCTGAAGTGGGTACCGGAGACACCTGGaacagATGTGGACCTGTTGGTGTGTAAGCACCAGGGCCCGTCCTGCTGCACCCGCAAGATGGAGGAGAGCTACCAGGAGGCGGTGAGACGAGAGACCCTCCAGAATGTCCGCTCCTACAGCTTCGAGCTGAAGTACCTCATCTCCGGCCACGCCACTGCCTTCCAGGacaCCTTCCAGTATCTGCTCTCCTTCTCCCAGGGCCACCTATCCTCCCTGCTAGAGGACACATACTCGCCCCTCTCCCGGGAGGCCCTCCCCCATGTCAACGCcctgttctcctccctctccctctacatccGCGGACACAACCTCTCCCTCGAAGCTGCCGTGGCCCGTTTCCACGACAACCTCTTCCCGCTCGTCTACGGGCGCCTGGTCAACCCGGGCGTGGGCGTCCAGGGTGGTTTGTCCGGTGAGCGGGGCGAGTGTCTCCGCGCCACACGGCAGGACGTCAACCCATTCGGCCCTCACCCCGAAATGCTCGCTCAGGAATTGGGGCGCACTCTGGGCGCCGGGCGAGCCTTATCCCTGGCCCTCGCCGAGGGCACCGAAGTCATGAACGCCACCGAACACGTTTCCTTCACCAAAGAGTGTTTACGGGGCTTGACCAAGATGCAGTACTGTTCGCACTGCCGTGGGCTGACGCTGATCAAGCCGTGCGTGGGCTACTGTCTGAACGTGATGCGCGGGTGCTTGGCGAGCGTGGCCGAGCTGGACGGGCCGTGGCGGCGGTATGTGGCGGCTCTGGAGGAGCTGACCAATGCTGTGGCCGGACAACACAGCCTGGAACTGGCCCTGCTTGGAGTCAGGGGGCACGTGAATGAGGCCATACTACACGCTCAGCTCCATGGGCCCACGCTGACCGCTACGGTGGACAAAGTGTGTGGTCGGTCAGCCAAGGAGCCCCGCACCAGCGTCCACCCTGACCCCGCCCCGGAGGTCACGACCTCCACGGTGACATCATCGACCGTCCCTCCCTCTGaccccccctccatccccccaccAGAACAGCTGATGGGACAACTTGCCCACCTGAGGAGGGAGTTTCTGAGCTACATCCAGCGCTATAAGTCATTCTTTGCCGTGCTTCCGGAGATGctgtgtgagggagagatggtggtGGACGACTTTACCTGCTGGAGCGGAGACGACGTGGTGGAGAGttatacAGGCAGAGTGGTGGGGAACGGTCTCCAGGCCCAGAAGCAGAACCCCGAGGTCAAAGTTCGCAGCCCAAACCCCGAACTGGCCGAGGTGAAGGAGAGGCTGGAGCGCTTCAACCAGGAGATTCAGGACATGCTGCCAGGGCTGGGCCAGAGCGAGTCCTGGGGGGAGCTGGGTAGTGGCGACACAGAGGATGGCAGCGGAGACTGTGACGATGAAGACGGGTGTCAAGGGTCTGGAACGGGGACGGTCAGGAGCTcccctgaTGGTCGACCAGAGGTTTCCAGCGACAAACCCGTAGGAAGTAACCCTGGTGGTCGTGCTCCCCCGGTGGTTAGGCTGAGAGGTGCAGGGTGcccccctgcctgtctgtctctacccacGGCCCTCACCCTCCTCCTGGTCACTCTGGCTCTACAGTGGAGCATGCTGTGATCAAATCATAATGCCCCCTACTGACCTGgccccatccacacacacagtggagactacacccctacaccacctCCTATGTACCCCAACCCCAATGCACAGACTGGACTGGGGTAGAGGAAGGAGGATGGATGAAGAAATGCgaagaggacggagagagagggaggagggggtgaagagagaaggagagagagagatttgtgtgtgtggggggggctcCTCACAGGCAGATTGTTACAGTACTCAgcctgctgcttcctgtgtgtATGCTGTGGACTAGTCTCCCTCCACAGCTCTCCTGCTCTCTGCTTTAACAATGCACTCACATTCTCTACCACTGGGACGGACTACCACGCGGTGGGACGGACTACCACGCGGTGGGACGGACTACCACGCGGTGGGACGGACTACCACACACTGGGACGGACTACCACGCGATGGGACGGACTACCACGCACTGGGACGGACTACCACGCGGTGGGACGGACTACCACGCGGTGGGACGGACTACCACACGCTGGGACGGACTACCACGCGGTGGGACGGACTACCACGCGGTGGGACGGACTACCACGCGGTGGGACGGACTACCACGCGGTGAGACGGACTACCACGCGGTGAGACGGACTACCACACACTGGGACGGACTACCACGCTGTGGGACGGACTACCACGCTGTGGGA
>XM_036985798.1
AGTGAACGCGTGTGCATAGCTTCGGAGAGAAGCGCATGGCTTGGGGGAGAGAAGTATGCACGCAGTCGAACAGCGCCTGTTGAGTGTGGGACGTCTACCAATCTTCGTCTACTACAATaccgtctctcccctcctcaagacAAGATCATATAGGCTCAGTGTGGAAGGGCCTTTATGCATTAAAACCAATAATGTGAGAACCCGATGCAGACCTCGTGTCATGGACGTTTAATTGTAACAACAGCTCCATTTTATTTGTGTCGTACATTTTCTTAACCGGCGGTGAAATCATCGATTTACACTAACCTACTGATACCTGGATTGAGATGCGGCAATGTTCCGAGCAATATGCACACGTGTAAACTTCTGCTGGATTTGGCTGGCAGTTCTGTTTCTGCTGAAAGTAGAGGATGTTGGCGCGTACAGCTGTCATGAGGTGAAGACCGCTTTCCAGGTGCGACAGATCGGTCCGCTGAAGTGGGTACCGGAGACACCTGGaacagATGTGGACCTGTTGGTGTGTAAGCACCAGGGCCCGTCCTGCTGCACCCGCAAGATGGAGGAGAGCTACCAGGAGGCGGTGAGACGAGAGACCCTCCAGAATGTCCGCTCCTACAGCTTCGAGCTGAAGTACCTCATCTCCGGCCACGCCACTGCCTTCCAGGacaCCTTCCAGTATCTGCTCTCCTTCTCCCAGGGCCACCTATCCTCCCTGCTAGAGGACACATACTCGCCCCTCTCCCGGGAGGCCCTCCCCCATGTCAACGCcctgttctcctccctctccctctacatccGCGGACACAACCTCTCCCTCGAAGCTGCCGTGGCCCGTTTCCACGACAACCTCTTCCCGCTCGTCTACGGGCGCCTGGTCAACCCGGGCGTGGGCGTCCAGGGTGGTTTGTCCGGTGAGCGGGGCGAGTGTCTCCGCGCCACACGGCAGGACGTCAACCCATTCGGCCCTCACCCCGAAATGCTCGCTCAGGAATTGGGGCGCACTCTGGGCGCCGGGCGAGCCTTATCCCTGGCCCTCGCCGAGGGCACCGAAGTCATGAACGCCACCGAACACGTTTCCTTCACCAAAGAGTGTTTACGGGGCTTGACCAAGATGCAGTACTGTTCGCACTGCCGTGGGCTGACGCTGATCAAGCCGTGCGTGGGCTACTGTCTGAACGTGATGCGCGGGTGCTTGGCGAGCGTGGCCGAGCTGGACGGGCCGTGGCGGCGGTATGTGGCGGCTCTGGAGGAGCTGACCAATGCTGTGGCCGGACAACACAGCCTGGAACTGGCCCTGCTTGGAGTCAGGGGGCACGTGAATGAGGCCATACTACACGCTCAGCTCCATGGGCCCACGCTGACCGCTACGGTGGACAAAGTGTGTGGTCGGTCAGCCAAGGAGCCCCGCACCAGCGTCCACCCTGACCCCGCCCCGGAGGTCACGACCTCCACGGTGACATCATCGACCGTCCCTCCCTCTGaccccccctccatccccccaccAGAACAGCTGATGGGACAACTTGCCCACCTGAGGAGTTCATTCCCCCTGAAACCCTCCAAGAACGATAAACCTAGAAGTCTGAAAAAGATCTCTAGGGAGTTTCTGAGCTACATCCAGCGCTATAAGTCATTCTTTGCCGTGCTTCCGGAGATGctgtgtgagggagagatggtggtGGACGACTTTACCTGCTGGAGCGGAGACGACGTGGTGGAGAGttatacAGGCAGAGTGGTGGGGAACGGTCTCCAGGCCCAGAAGCAGAACCCCGAGGTCAAAGTTCGCAGCCCAAACCCCGAACTGGCCGAGGTGAAGGAGAGGCTGGAGCGCTTCAACCAGGAGATTCAGGACATGCTGCCAGGGCTGGGCCAGAGCGAGTCCTGGGGGGAGCTGGGTAGTGGCGACACAGAGGATGGCAGCGGAGACTGTGACGATGAAGACGGGTGTCAAGGGTCTGGAACGGGGACGGTCAGGAGCTcccctgaTGGTCGACCAGAGGTTTCCAGCGACAAACCCGTAGGAAGTAACCCTGGTGGTCGTGCTCCCCCGGTGGTTAGGCTGAGAGGTGCAGGGTGcccccctgcctgtctgtctctacccacGGCCCTCACCCTCCTCCTGGTCACTCTGGCTCTACAGTGGAGCATGCTGTGATCAAATCATAATGCCCCCTACTGACCTGgccccatccacacacacagtggagactacacccctacaccacctCCTATGTACCCCAACCCCAATGCACAGACTGGACTGGGGTAGAGGAAGGAGGATGGATGAAGAAATGCgaagaggacggagagagagggaggagggggtgaagagagaaggagagagagagatttgtgtgtgtggggggggctcCTCACAGGCAGATTGTTACAGTACTCAgcctgctgcttcctgtgtgtATGCTGTGGACTAGTCTCCCTCCACAGCTCTCCTGCTCTCTGCTTTAACAATGCACTCACATTCTCTACCACTGGGACGGACTACCACGCGGTGGGACGGACTACCACGCGGTGGGACGGACTACCACGCGGTGGGACGGACTACCACACACTGGGACGGACTACCACGCGATGGGACGGACTACCACGCACTGGGACGGACTACCACGCGGTGGGACGGACTACCACGCGGTGGGACGGACTACCACACGCTGGGACGGACTACCACGCGGTGGGACGGACTACCACGCGGTGGGACGGACTACCACGCGGTGGGACGGACTACCACGCGGTGAGACGGACTACCACGCGGTGAGACGGACTACCACACACTGGGACGGACTACCACGCTGTGGGACGGACTACCACGCTGTGGGAC

Function

NR:

description
PREDICTED: glypican-5-like isoform X1

GO: NA

KEGG:

id description
K08111 GPC5; glypican 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985801.1 False 2539 mRNA 0.57 9 57932295 58089891
XM_036985799.1 False 2778 mRNA 0.60 8 57932298 58136177
XM_036985798.1 True 2839 mRNA 0.59 9 57932298 58136178

Neighbor

gene id symbol gene type direction distance location
trnag-ucc-2 NA coding upstream 3849 57928375 ~ 57928446 (+)
trnam-cau NA coding upstream 4410 57927813 ~ 57927885 (+)
trnai-aau NA coding upstream 9672 57922550 ~ 57922623 (+)
trnap-agg-8 NA coding upstream 16224 57916000 ~ 57916071 (+)
LOC118965533 NA coding upstream 77878 57850799 ~ 57854417 (+)
LOC110530232 LOC106568852 coding downstream 29469 58165647 ~ 58268703 (+)
LOC110530233 LOC106599529 coding downstream 199016 58335194 ~ 58649978 (+)
LOC118965657 NA coding downstream 536389 58672567 ~ 58672675 (+)
LOC110530235 LOC100136455 coding downstream 921238 59057416 ~ 59084854 (+)
LOC110530237 LOC106568845 coding downstream 1051889 59188067 ~ 59211817 (+)
G726063 LOC106568854 non-coding upstream 29626 57901514 ~ 57902669 (+)
G725988 NA non-coding upstream 37938 57893810 ~ 57894357 (+)
G725985 NA non-coding upstream 54543 57876825 ~ 57877752 (+)
G726053 NA non-coding upstream 56019 57874589 ~ 57876276 (+)
G726051 NA non-coding upstream 64888 57866178 ~ 57867407 (+)
G726210 NA non-coding downstream 21654 58157832 ~ 58158712 (+)
G727091 NA non-coding downstream 92352 58228530 ~ 58231957 (+)
G727124 NA non-coding downstream 158132 58294310 ~ 58295278 (+)
G727161 NA non-coding downstream 220861 58357039 ~ 58358245 (+)
G725907 LOC106581475 other upstream 376813 57554723 ~ 57555482 (+)
G725878 NA other upstream 416901 57513606 ~ 57515394 (+)
LOC110530213 LOC106568871 other upstream 454566 57421244 ~ 57478855 (+)
G725573 NA other upstream 948010 56983570 ~ 56984285 (+)
G727348 NA other downstream 510681 58646859 ~ 58674005 (+)
G728057 LOC100136012 other downstream 844753 58980931 ~ 58981271 (+)
LOC110530248 crem other downstream 1624297 59748668 ~ 59768093 (+)
G730206 NA other downstream 2904390 61040568 ~ 61042129 (+)

Expression


Co-expression Network