XLOC_025848


Basic Information

Item Value
gene id XLOC_025848
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 58806215 ~ 58811833 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052833
ACTACATCTGTGGTTCACCTTGTTTTAAAGCAGCGCAGTGAAGTTGTGGGATGGAGGTCTTCAGGTCTTCCTCTGGCAGCTGTTCAAACTCCTCCTGATGTACACAAATGGTCAGAAAAATCTCAATTAGTGAGTGAAATCAGACACGCTTCATGAACATACAACTTATGCACAGAAAAAAGCAATATTCTCATTTAAACAAGCTTTAAAATACGATTAAACCACATTATTATTCACATTTAGACAAATTACGTCCTTCAGCAACCAATAAATGATCGCTTTTATTGAATTATTCTACCCTTCTCAATCTATTTTACAGCATCAGAAGCAGCGATGGTGACCGCTTGGCTGCAAGTTAACATAACTGAaggtaaacacacaaataaaaaaacatgtactGTTTATTTTGAATGAATTGATATCCCATCATCTACAAGGCCAGGCGGTTTTGACAGTGTAGGCGGCTGATCTTGCTCTGAAAGCATGCACTGGCTGTATCTTAAGGACAACACAAGTAGGGAATTTAAACAAAAGAAGCACGAGAGAGAAAGAAAAGTAAAGGTCGACTCACACTAGGGCTGAGTGATATAATAGACTGTGAAATAGAACTAGGATTTAAAGGtttgaagggttagttcacccaaagatttaagttctgttattaattacttcatCCCAAAtgtttcagaacacaaatgaatactttttagagggaatcagagagctccctcatcctccatagacagcaatgatacattcaaagtccagaaaaggagccAAAACACAATTTTGAAACACACTATATGGTTtttgtaatcatatgaagctccaagaaaacttttgtgcaccaaataaATACTGTCGTCTCTTCTGTATCAGGTTGTGGTGCACGTTTACTTCAGAAAATATGGCATAAACACATCCTGACCTGATGACAAAGACATTGGCAAacacttaattttattattatttttttagtgcaCAGAAGTGTTCTTGTAGCTTCGAATGATTATAGTTGGACCACTGAAGTCAACTGAAATATATTTGGTTCCTGAGACAACTGCgagtctatggaggatgagggagctctctaaTATCATCTAAAATATGTTTGTGTTCAAAAGTTGAACGAAGGTCATGTATACGAGGCGgagtcatttttgggtgaactagtccCTAACATTTTAAGATGGAAAGGAACTTCAATTTAAAATGGATTCTAGCTTAAAAATACCATTGATAACTGTGTGGtattataatagtaaaatatattaacattttatgtgTATAAACATCGAGAATGGGCACCTAATGTACACTTGTGGTCAGAATTAAAAAAACGcgcatcttaaaaaaaaaaaagagactttgtACACAGAATACAATTAAACGGCACAAACGTACGATGTGAAAGCAGAAGCAGGGTTGTGGTCAGCACCACTTCTTGTACAGGTACGAATCTGCTTTAGGCAATTCATTGTTCAGTTTTCAGCATGAAAGCAGTTTGTTAGTGATTTGCATTGCTTTTATCATATCACGCTATGTGTGAAAGGGCCTCAATTTCAGGGGCTTTAGTTCCCTTCACTCCATGACAatcaaaagtttatattttaaacGAAAATTACTATTCACAACTAAATGACGTAGCTCTTTGAAATAGGTTACAAAGGCAACCTGGTAGAATTTGGTTCCTCTTATGGCtgatttccactgagtggtacgattCAGTATAGTCAATACACAATGTAAGATATGAGGTATACAATGAGAGTTCAACTGCATTACTATGAATGTGCAACGCTCAGAAGGGCTGCCACAAACAAATGACTTCCCACCCTCCAAGTCAAAATCGTCAATCGCTATAGGTCAGCGTTTCTTTGGAGGGGCTACATACAGCCTTGTTCATTACTACAAATCATGTCAAATGGCAACTACAGTATGCCTGCATTaacaaatattgtattttatgcacACTCAAGTTAGTTATTTCAAATGAACAAGCGATTTCATGCATTCCTAGATGTGTCTTCAATTACGTTtaaacaacaatggaggacatACAGCAGAACGAGTTTTGATTGAGTTTGGGTCGAACATGGTTCAGTGCTgcatagcgtcagatgcatttaaAAACGTCAATTGTTTTGCCACTTACAATTGACGATTCCCTGTAAACCAATCATTTAACAGTGAACATAGCTTCACCATTTAAGAACCATACTGTTGGGCTAGCTATCCTTATAAAAGGGTCCCAAAACAGTGGTACGGTATGATATTTTGGTACCATTCAcaacttttgacagtggaaacaacTAAAATAATTGCGAACGTTCGACTGAAATgttccactcagtggaaacgaccTATTATTAAAGACAAACCTCCAACTGAAACTATATTCGAAGTCATTTTATAATTCGAACGATCACTAAAGACTTTGTTTTTTAGTACTGTTTTGCTAGTTATCTTTATGAAAGCATCCCAAGAAGGTGGTACGGTACAGTGTTTTGATACCATGCACAACTTCTGActgaaaacaatcaaaataattgCGTACTCTACTAAAATGTACCGCTCAGTTGAAACGACCGATTATTAAAAGACCAACTACCAGAAGTTGTGAATAGTACCAAAATACAATAGCATGACCACTTTGTGACGCTTTCATAAAGATAACTAGTACTGTTGTGAAAGTGATAGCGTATGCTATTTTGGTGCCATTCCCAACTTCTGGCAGTGAATAATTTTGGAATAATTGTGTAATCTACTGAAATGTACTGCTCAGTGGAAACGACCCATTATTAAAGACAAACCTCcaatttaaactatattttatacTTCAGTCACGATCACTAAAAGACTTATAAGTTATCTTTATGAAAGCGTCCTAAGAAAGTGGTACAGTaggatattttgttttaatatttgaagCCATTTTATACTTCGAACATGATCACTAAAGATGTTCGCTTGTACAGTTGTGCTGGTTATCTTTATGAATGAGTCAAAAAAGTTGGTACCATTTACAACTTCTGACAGTGAATTCAACAACAAAAATTATTGCATACTCTACTAAAATGTACTGCTAAGTGAAAACTGCTCATTATTAAACACAAACCTTCAACTAAAAGAATTTAAAACTTCGAACACGATCACTAAAGTTTTAGTATTGCTGTGCTAATTATTTTTATGAAAAGGTCCCAAAAAAGTGGTATGATACAATATTTTGGTACCATTTACAACTTCTGACAGTAGATTccacaacaaaaataattttgtacTCTTCTGAAATGTACTGTTCAGTGGAAACGACCCATTATTAAAGACAAACCTCcaatttaaactatattttatacTTCAGTAACGATCACTAAAAGACTTATAAGTTATCCTTATGAAAGCGTCCTAAGAAAGTGGTACAGTAGGATATTTTGGTTTGATATTTGAAGCCATTTTATACTTCGAACATGATCACTAAAGATGTTCGCTTGTACAGTTGTGCTAGTTATCTTTATGAATGAGTTAAAAatagtggtacggtacagtattTTGGTACCATTCACAACTATTTACAGTGAATTCAACAACAAAAATTATTGCATACTCTACTGAAATGTACTGCTAAGTGAAAACTACCCATTATTAAACACACACCTTCAACTAAAAGTATTTAAAACTTCGAACACGATCACTAAAGTTTTAGTATTGCTGTGCTAATTATTTTTATGAAAAGGTCCTAAAAAAGTGGTATGATACGATATTTTGGTACCATTTACAACTTCTGACAgtgtaaacaacaaaaataattgctTACTCTACTGAAATGTACCGCTCAGCGGAAACGACCCATTATTAAAGAAACCTCaaactgaaaacatttaaaacttcaAACACGATCACTAAAGATGTTTGTTTAGTACTGTGGTGCTAGTTATTTTAATGAAATAGTCCAAAAAAAGAGGTGTGATAGGATATTTTGGTGCCATTCACAACTTCTGACAATGgattcaacaacaaaaataattgcgTACTCTAATATTGTGTCTTTCCACTGAGCGGTACATTTCAGTAGAGACAAAcctctaaacaatattttatagtTCGAGCACGATCACTAAAGACGTTTGTTTAGCTATATCACCCAGCCCATATTCAAACCTACTGCTGTTTACTGaaaaggcaaaaagaaaataagCAACACAAACAAGGAGAAAGAACCGTTGAGCTGGATCTGAGCTGATTTTTTAACTTGTTCATTACTGATTACTGTGGGATATCAATTGAGCTCATCTGTGAACCTGACATGTTACGTCCACCCGTTTAGATATAGCACTTGAAACCAAGAGAAGCAAAACTGAGGACATTTTCAAACTGGGAAAAAAGAGATAGGGTAAAACAAACATCAAGCTCTGAGACACGTTCACAAGGCAACAGCATTCAAATGGATGTGGGTAGTGAAAGGAATACCTGAGTGAATACCTGCACAGATTGACAGTATCCTTGATTTCTAAATGGACTTTTCATGTGAGGGGGGTCGCTCACAACACCAACGCTGTGTGAGGTGTGGAAGTCAGCTGCAATAATTCATTAACCCTACACTTTTCCATCATCCCAAAAGCTAGCGGATCTCAACGTTAAGAACAGACGGTATTAAAAAGTGCAACATATCCATGTAACTCCAAtataaagagaagaaaaaaaaaaaaaatcaatcaataatcaCTGCAGTTCAATGAACGCATCAATGAACAGACATCAGATGGTAAAATGCCGTGCGCTTATGCATGTACACGCATATGAGCACACGGTCATTTTAGATGTGCTAGTTTCAATCTTACTGCGAGCATAAAGTCAACAGGTTGAGGTAGAGAAGAGAGTtaggggaaaataaataaataaagtaacaaaacACGTAAATTTGGAAGAGAACTTGTCTAAAGAGACAGATGTATGACCGATACAAAACGAGGTACCTCCAAGCATGTTTTTCAGGACTACACTGGCCTTTCCCTCTGGGTTTGTTTCATTCTACTTTCTTCCGTTTCATCAGCCTAGTCCCATCTTCAGTGCATACTTACGATGCACTATTAAAAAACAGGAAGAAAAATCACAGACAGAACTGAAAGAAAAAGGGGGGAAGGGGAGAGGGGGGAGAGACCCGGGACGGGGAGGACGGTGCACTTACCTGGGGCTGATCTGAGGTCCTATCAGATCAGTTTTAATTGGACTGTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052833 True 5232 lncRNA 0.36 2 58806215 58811833

Neighbor

gene id symbol gene type direction distance location
XLOC_025847 NA coding upstream 91009 58712700 ~ 58715206 (+)
XLOC_025846 NA coding upstream 93845 58711054 ~ 58712370 (+)
XLOC_025845 CU570691.1 coding upstream 95460 58702320 ~ 58710755 (+)
XLOC_025844 CU571382.5 coding upstream 111178 58694176 ~ 58695037 (+)
XLOC_025843 NA coding upstream 123329 58682557 ~ 58682886 (+)
XLOC_025849 igl1c3 coding downstream 21473 58833306 ~ 58835177 (+)
XLOC_025850 NA coding downstream 23628 58835461 ~ 58857483 (+)
XLOC_025851 CABZ01044154.1 coding downstream 150071 58961904 ~ 58967097 (+)
XLOC_025852 CABZ01044156.1 coding downstream 172630 58984463 ~ 58989816 (+)
XLOC_025853 NA coding downstream 213101 59024934 ~ 59027837 (+)
XLOC_025429 BX649540.1 misc upstream 28557179 30248739 ~ 30249036 (+)
XLOC_025856 NA non-coding downstream 400327 59212160 ~ 59224196 (+)
XLOC_025865 NA non-coding downstream 1225717 60037550 ~ 60043897 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000040_00240852_00305487 GABRB2 misc CI01000040 null 240849 ~ 313275 (+)
eurasian perch (Perca fluviatilis) G153746 NA non-coding NC_053126.1 CM020923.1 10609591 ~ 10638479 (+)
bowfin (Amia calva) G42136 NA non-coding CM030125.1 CM030125.1 20401708 ~ 20405085 (-)