LOC110530235 (LOC100136455)


Basic Information

Item Value
gene id LOC110530235
gene name LOC100136455
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 59057416 ~ 59084854 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985805.1
AGAATCAGAGTGAGACTCCAGTACTCCCCACTCTCTCTATATAGTGAGTGTAAAGAGTATTTTATCTTAGCCTCCATAAGGGAACACAACTAGAAGAACACCCATGCTAGGAGGCACCTACATTGGGTTGCTGGCTACAgcagccctcctctctctgctacaGGATGGGACTTACGGAAGTGTTGAGGGTGACAGATCATCAGTTACAATGAGTGATGCAGGGACCTGCACTGTCCACAGCAACTTCCACTACAGCACCTTTGACTGGGCCAACTTCCGCTTCGTTGTCCCCTGTACCTACGTCATGGCCCGGCTGTGCTCGTCCTCTGAGACCCCCCTGTCCCACTTCAGTGTGGAGGTGAAGAACGAGCAGGGAGGGAACTCCTCTGTATCTCCTGTTCTGCAGGTCAATGTGGAGGTGGAGAACCTCAGGGTCTCCCTGCACAAGAGACAGAACCACCGGGTCATGGTCAACGGCATTTGGAAGAAACTCCCCCTGAGCCTCAACGGTGGCACCATCAACATCCAAGGCAATGCGGCTTCCGTCGTTCTGGAGACTAACTTCAACCTTTTTGTATCCTATGATGACTCCTGTGCCGTCCATATCACCATCCCCGCCTCGTATTCCGGTAAAGTCTGCGGCATGTGCGGGAACTTCAACCACCTGAGAGACGATGATTACCACACGGCTGACGGTTCTGAGGCTTCAACCGCTGCCACGTTCGGCCAGAGCTGGCAGAGCCAGAAGGCCTGTCAGTCAACCGTTGTCCCCAATGAGTGTCCCCCTATGGAGGAGGCAGAGTACGCTAGCGAGCCCTACTGTGGGTCACTGGTCTCCAGGCACGGGCCCTTCGCAGAATGCCAGTCTGTCCTGGGAGCCGAGAGCTACTTCCGGAGCTGTGTGGCGGGGATGTGTGGAGCAGGTGGTGGCCTCGAGGTGCTGTGTGAGGCCCTGCAGTCCTATGCTGATATGTGCCTCAAGGCCGGGGGGCCTGTACCTGCCTGGAGGAACTCGACTATGTGTCCCCTGGAGTGTGGAGCGAACAGCCATTACAACGCCTGTGCCGAGGGCTGCCCTGAGGCCTGCTCCGTCATGGACGCCCAAGGGGCGTGTGGAAGCTGTGAGGAAAGGTGTGAGTGCAACCCCGGCTTCAAGCTCAGTGGGGGGAGGTGTGTCTCTGCAGAGGACTGTGGCTGCTGGATGAATGGAGTACACTATGAGAAAGGAGCGACGTTCATGGACGGTGAATGTGATCGCGTGTGCCAGTGTATGGGCGGGGGCGGACTCCAGTGTTCTGCTTCCTCCTGCGCGGACGACGAGGTGTGCAAGGTCAAAGAGGGGGTCAAGGGTTGCTTCCCCTCCAGCCCGGCCATCTGCCGCATCTACGGAGACCCCCACTACATCACCTTTGATGGCAAGGCATACACCTTCCAGGGGGGCTGCAGCTACACCCTGGCCAAGACGTGCGGCGGACACACACCCATCCAGTTCTCAGTGACGGGCCAGAACTGGAACCCGGGGAGCGAGAGCAGTGCTAAGCTGGCCGCAGTGGTTCTGGAGACCAAGAGTCTGCATTTGAAGATAGATAACTACAGCGTTACTGTGAACCATGTTTGGCAGAGTCTTCCTATTGCAGTAAACGGCTCATACGGCGAGGTGAAGCTGTACAAGAAGAAGCAGTACACTGTCATGGAGACGACCTTTGGCCTACAGATGCTGCTGGACGATCATCACAGGCTCTTCCTGCAGCTGGACGAGCGCTACAAGGGTGAGATGTGCGGCCTCTGTGGTACCTACTCCAACGACCAGGGGGATGACTTCCTGACCCCAAACGGCACCAAACCCGAGACCAATGAGGTCACATTCGCCAACAGCTGGAGAGTGAAGAGTCCGGAGGACGATCGCTGTGTTGCTTCCCCACCTGCCCCCCAACCATGTGACTCCCATTTGGACAACCAGGGCTACCAGGAGTGTTCCAAGCTGCTGCGTGACACTTTCAAGCCCTGCCACCCATTTGTCCACCCCACATCCTACATAGACAGCTGTATGTCTGACCACTGTGCCTCCGGCGGGGACATGCATGTGACATGCTACTCCCTGAAGTCCTACGTGACCGCCTGTCAGGTGGCCAGTGTTACCTTGCCCCCCTGGTTTAATGACACCGCCTGTGATAGCCTACCTGGCCCTCCCACAAAACCACCAGTTACTACACCTGACAAAACATTTTGTCCTCTAGACTGCAACTTTGACAACAGCGAGTGTGGGTGGGAGCAAATTGTTCAGGACAGTTTTGATTGGAGAAGACAGAGAGGCCCAACCCCGTCTGACCTCACAGGGCCAACCCAGGACCATACCACAGGAGGTGGCTCCTACATGTACATTGAGGGCAATGGTGTGTACTACGGAGACTCTGCCCGTATGATAAGCCCTAAGTGCCAAAAAGGGGCGACAAAATACTGCCTGCGCTTCTGGTACCACATGTACGGACAGGCCAAGGCCATGATTCTCAATGTCTACCAGCTTGACGAGCACAACAAACACAGGAAACTGTGGTCCAAAGCCAATAACCAGGGCTCCACATGGTATCTTGCCAAAGTGGATATCAATGTCGATGGGTCATTCCAGATCATCATGGAGGGAATCCGAGGCTCTGACCCTCAGTCTGACGTGGCATTTGACGACATCTCCATCCATTATGGATCATGTTCAGGTTCCTCAACAGGTGTTGTTGGTGGACCTTCAGTTCCTCCCCCAGTTGAAGAAGGATCATTTGTCCCACACCCAGTCTGCAACTTCGATTGCACTTTCGAGGAGGACCTCTGCAGTTTTACCCAGCTGATGATGGATTCTTTTGATTGGACAAGGCACAGTGGCTCCACCCCCACTGCGATGACTGGGCCATCAGCTGACCACACTAAAGGAGATGTCGGTCACTACTTGTACATCGAAGCCAGCAATGTGTCTAACGGAGACACGGCTCGCCTCCTCAGCTCTGAGTGTTCTGACCCCGGTCTTCAGTGTCTGCAGTTCTGGTACCACATGTCCGGTTCAGCGGAAACTATGGGCCTGCACGTCTACATACTCCAGGACCGCAGCGCCGACAGGGTATGGTGGAAGAGGAACAACCAGGGAGACAGCTGGCAACTAGCCCAGGTGGATCTCAGGACCACTGGACCTTTCCAGATCATCTTCGAGGGCCGAAGAGGCACCACTGATCAATCTGATGTGGCTATAGATGATGTTTCTCTGCATCGTGGACACTGTGAAGATCTGATTAAGCCAACAACACCAACCGAGAATCCTGTGCCAGCAGACAAGTCTACCATTGCACCAACACCAGGTccaattaccatgagaccagTAACACTAAGACCAACAACTGCTGCACCAGCTCCAACCAACTCAACCATGCCATCTAAACCCTCAACAACTGCTAGGCCACAACCACCAACAACTATGAGACCAGAAACACCAGCACCACCCACAACTGAAATACCAAGTCCACCAAGACCGACAACTGAAAGACCACAACCCCCAAGACCAACAACTGCAAGACCACAACCGCCCACCACAGCGAGACCAACACCATTGTGCCCAAACAACAGCCACTTCACCCCCTGCATCTCCGACTGCCAGCCCACCTGTATGCACCTCCACGGCCCACCCGACTGCCACTCTGATGAGCACTGcatacagggctgtgtgtgtgacgAAGGCTTTGTGCTcagacagagggtgtgtgtgcCCACCCAGCAGTGCGGCTGTGTGGACAGCAATGGCAACAGCCATCACTTTAAAGAGAGCTGGTACACTGAGCACTGCCATCAGAAGTGTGAATGTGTTGAAGATGATGGTGTGGGGGAGATTGACTGCAATAATGAATATGAGTGTGATGGGGATGCCATCTGTCTTCAGAATGAAGCCGGACTGTATTTCTGCAAGTCAACAGGCTTCAGTGAGTGCTCTATCAATGGAGACTCAGAGTACAGAACCTTTAACAACAAGACGCATGACTTTGAGGGCACAAACTCTCATGTTCTGGTCCAGACCACAGACCTGTCCAAGAACCAGCCAGACATCTACATCAAGACCATCAATGAGATCGTCAACCAGGATGGTGATGACAGTCATGGTGACAGTAGCCAAGGTGACAGTAGCCAAGGTGACAGTAGCCAAGGAGACAATAGTAATGTTGATAGCAGTGATGAGGATGACAAGCATAAAGACAGCATGAGAAGGGAGAACAGTGAAGACAAGCATGATCGCAGCGATGAGGACAGTGATGAAGATAAAAGTGAGAACAACAACCATCTGCGACTCAGAGGGCTGAAAATCAGAGTCTACAACCACATAGTGGAGTTCAGGAAGAACAGGAAACTTGTTctggaTGGTAGGAGCACGCATGCCCCTGTCTCCCCAgcaaggggtctgaggattctGGAGAGCTCCTCTCGTATCTACCTGAAGACAGACTTTGGCCTCTCCGTGGAGTTTGATGGACACAGCAGAGCAGTAATCATCCTGCCCCACACCTACAAGAGGAGATTGGGAGGCCTGTGTGGCAACTTTGACGGCAAGAAGAAGAATTACATGATGAAGCTGAACGGTAAACAGGCCAAGATCGTCAAATAAATTGGAGAGAGCTGAAGAGTGACGGAGGACGGACTGAGCATAACATGGAGAGGATTATCTTCCCTTCGTAACTTTGCTTATGGCCAGCGACCTGACCTCAATGCATCAAGACCATTGaatttgtttttttcttttcttctcaTAGACAGACACATTCCTTCCTACAATGGACACAGTGCATTTGAAAGCACTTGGGTTAAAAAAAGGGGTTTTGTGGACTATGGATCAATAAAGTATTATACTTCTTCCATATGACTGTTGGTTTAAATCCTGTTGCTTCTGCAGCTTATGACCCACCTGTGTGCCTTAGGTTATTTACACAGTTAACCTAGTGCAAGAATCAATGTACACACATGACACTTCCCACttgaaaaaatactacagtttactatagaatactacagttcagaccccagtcctacctacctggttatggaaaatgtgctcttttagtatttctaCAATAGGTGGAGAAAGTGGAGAA
>XM_036985807.1
AGAATCAGAGTGAGACTCCAGTACTCCCCACTCTCTCTATATAGTGAGTGTAAAGAGTATTTTATCTTAGCCTCCATAAGGGAACACAACTAGAAGAACACCCATGCTAGGAGGCACCTACATTGGGTTGCTGGCTACAgcagccctcctctctctgctacaGGATGGGACTTACGGAAGTGTTGAGGGTGACAGATCATCAGTTACAATGAGTGATGCAGGGACCTGCACTGTCCACAGCAACTTCCACTACAGCACCTTTGACTGGGCCAACTTCCGCTTCGTTGTCCCCTGTACCTACGTCATGGCCCGGCTGTGCTCGTCCTCTGAGACCCCCCTGTCCCACTTCAGTGTGGAGGTGAAGAACGAGCAGGGAGGGAACTCCTCTGTATCTCCTGTTCTGCAGGTCAATGTGGAGGTGGAGAACCTCAGGGTCTCCCTGCACAAGAGACAGAACCACCGGGTCATGGTCAACGGCATTTGGAAGAAACTCCCCCTGAGCCTCAACGGTGGCACCATCAACATCCAAGGCAATGCGGCTTCCGTCGTTCTGGAGACTAACTTCAACCTTTTTGTATCCTATGATGACTCCTGTGCCGTCCATATCACCATCCCCGCCTCGTATTCCGGTAAAGTCTGCGGCATGTGCGGGAACTTCAACCACCTGAGAGACGATGATTACCACACGGCTGACGGTTCTGAGGCTTCAACCGCTGCCACGTTCGGCCAGAGCTGGCAGAGCCAGAAGGCCTGTCAGTCAACCGTTGTCCCCAATGAGTGTCCCCCTATGGAGGAGGCAGAGTACGCTAGCGAGCCCTACTGTGGGTCACTGGTCTCCAGGCACGGGCCCTTCGCAGAATGCCAGTCTGTCCTGGGAGCCGAGAGCTACTTCCGGAGCTGTGTGGCGGGGATGTGTGGAGCAGGTGGTGGCCTCGAGGTGCTGTGTGAGGCCCTGCAGTCCTATGCTGATATGTGCCTCAAGGCCGGGGGGCCTGTACCTGCCTGGAGGAACTCGACTATGTGTCCCCTGGAGTGTGGAGCGAACAGCCATTACAACGCCTGTGCCGAGGGCTGCCCTGAGGCCTGCTCCGTCATGGACGCCCAAGGGGCGTGTGGAAGCTGTGAGGAAAGGTGTGAGTGCAACCCCGGCTTCAAGCTCAGTGGGGGGAGGTGTGTCTCTGCAGAGGACTGTGGCTGCTGGATGAATGGAGTACACTATGAGAAAGGAGCGACGTTCATGGACGGTGAATGTGATCGCGTGTGCCAGTGTATGGGCGGGGGCGGACTCCAGTGTTCTGCTTCCTCCTGCGCGGACGACGAGGTGTGCAAGGTCAAAGAGGGGGTCAAGGGTTGCTTCCCCTCCAGCCCGGCCATCTGCCGCATCTACGGAGACCCCCACTACATCACCTTTGATGGCAAGGCATACACCTTCCAGGGGGGCTGCAGCTACACCCTGGCCAAGACGTGCGGCGGACACACACCCATCCAGTTCTCAGTGACGGGCCAGAACTGGAACCCGGGGAGCGAGAGCAGTGCTAAGCTGGCCGCAGTGGTTCTGGAGACCAAGAGTCTGCATTTGAAGATAGATAACTACAGCGTTACTGTGAACCATGTTTGGCAGAGTCTTCCTATTGCAGTAAACGGCTCATACGGCGAGGTGAAGCTGTACAAGAAGAAGCAGTACACTGTCATGGAGACGACCTTTGGCCTACAGATGCTGCTGGACGATCATCACAGGCTCTTCCTGCAGCTGGACGAGCGCTACAAGGGTGAGATGTGCGGCCTCTGTGGTACCTACTCCAACGACCAGGGGGATGACTTCCTGACCCCAAACGGCACCAAACCCGAGACCAATGAGGTCACATTCGCCAACAGCTGGAGAGTGAAGAGTCCGGAGGACGATCGCTGTGTTGCTTCCCCACCTGCCCCCCAACCATGTGACTCCCATTTGGACAACCAGGGCTACCAGGAGTGTTCCAAGCTGCTGCGTGACACTTTCAAGCCCTGCCACCCATTTGTCCACCCCACATCCTACATAGACAGCTGTATGTCTGACCACTGTGCCTCCGGCGGGGACATGCATGTGACATGCTACTCCCTGAAGTCCTACGTGACCGCCTGTCAGGTGGCCAGTGTTACCTTGCCCCCCTGGTTTAATGACACCGCCTGTGATAGCCTACCTGGCCCTCCCACAAAACCACCAGTTACTACACCTGACAAAACATTTTGTCCTCTAGACTGCAACTTTGACAACAGCGAGTGTGGGTGGGAGCAAATTGTTCAGGACAGTTTTGATTGGAGAAGACAGAGAGGCCCAACCCCGTCTGACCTCACAGGGCCAACCCAGGACCATACCACAGGAGGTGGCTCCTACATGTACATTGAGGGCAATGGTGTGTACTACGGAGACTCTGCCCGTATGATAAGCCCTAAGTGCCAAAAAGGGGCGACAAAATACTGCCTGCGCTTCTGGTACCACATGTACGGACAGGCCAAGGCCATGATTCTCAATGTCTACCAGCTTGACGAGCACAACAAACACAGGAAACTGTGGTCCAAAGCCAATAACCAGGGCTCCACATGGTATCTTGCCAAAGTGGATATCAATGTCGATGGGTCATTCCAGATCATCATGGAGGGAATCCGAGGCTCTGACCCTCAGTCTGACGTGGCATTTGACGACATCTCCATCCATTATGGATCATGTTCAGGTTCCTCAACAGGTGTTGTTGGTGGACCTTCAGTTCCTCCCCCAGTTGAAGAAGGATCATTTGTCCCACACCCAGTCTGCAACTTCGATTGCACTTTCGAGGAGGACCTCTGCAGTTTTACCCAGCTGATGATGGATTCTTTTGATTGGACAAGGCACAGTGGCTCCACCCCCACTGCGATGACTGGGCCATCAGCTGACCACACTAAAGGAGATGTCGGTCACTACTTGTACATCGAAGCCAGCAATGTGTCTAACGGAGACACGGCTCGCCTCCTCAGCTCTGAGTGTTCTGACCCCGGTCTTCAGTGTCTGCAGTTCTGGTACCACATGTCCGGTTCAGCGGAAACTATGGGCCTGCACGTCTACATACTCCAGGACCGCAGCGCCGACAGGGTATGGTGGAAGAGGAACAACCAGGGAGACAGCTGGCAACTAGCCCAGGTGGATCTCAGGACCACTGGACCTTTCCAGATCATCTTCGAGGGCCGAAGAGGCACCACTGATCAATCTGATGTGGCTATAGATGATGTTTCTCTGCATCGTGGACACTGTGAAGATCTGATTAAGCCAACAACACCAACCGAGAATCCTGTGCCAGCAGACAAGTCTACCATTGCACCAACACCAGGTccaattaccatgagaccagTAACACTAAGACCAACAACTGCTGCACCAGCTCCAACCAACTCAACCATGCCATCTAAACCCTCAACAACTGCTAGGCCACAACCACCAACAACTATGAGACCAGAAACACCAGCACCACCCACAACTGAAATACCAAGTCCACCAAGACCGACAACTGAAAGACCACAACCCCCAAGACCAACAACTGCAAGACCACAACCGCCCACCACAGCGAGACCAACACCATTGTGCCCAAACAACAGCCACTTCACCCCCTGCATCTCCGACTGCCAGCCCACCTGTATGCACCTCCACGGCCCACCCGACTGCCACTCTGATGAGCACTGcatacagggctgtgtgtgtgacgAAGGCTTTGTGCTcagacagagggtgtgtgtgcCCACCCAGCAGTGCGGCTGTGTGGACAGCAATGGCAACAGCCATCACTTTAAAGAGAGCTGGTACACTGAGCACTGCCATCAGAAGTGTGAATGTGTTGAAGATGATGGTGTGGGGGAGATTGACTGCAATAATGAATATGAGTGTGATGGGGATGCCATCTGTCTTCAGAATGAAGCCGGACTGTATTTCTGCAAGTCAACAGGCTTCAGTGAGTGCTCTATCAATGGAGACTCAGAGTACAGAACCTTTAACAACAAGACGCATGACTTTGAGGGCACAAACTCTCATGTTCTGGTCCAGACCACAGACCTGTCCAAGAACCAGCCAGACATCTACATCAAGACCATCAATGAGATCGTCAACCAGGATGGTGATGACAGTCATGGTGACAGTAGCCAAGGTGACAGTAGCCAAGGTGACAGTAGCCAAGGAGACAATAGTAATGTTGATAGCAGTGATGAGGATGACAAGCATAAAGACAGCATGAGAAGGGAGAACAGTGAAGACAAGCATGATCGCAGCGATGAGGACAGTGATGAAGATAAAAGTGAGAACAACAACCATCTGCGACTCAGAGGGCTGAAAATCAGAGTCTACAACCACATAGTGGAGTTCAGGAAGAACAGGAAACTTGTTctggaTGGTAGGAGCACGCATGCCCCTGTCTCCCCAgcaaggggtctgaggattctGGAGAGCTCCTCTCGTATCTACCTGAAGACAGACTTTGGCCTCTCCGTGGAGTTTGATGGACACAGCAGAGCAGTAATCATCCTGCCCCACACCTACAAGAGGAGATTGGGAGGCCTGTGTGGCAACTTTGACGGCAAGAAGAAGAATTACATGATGAAGCTGAACGGTAAACAGGCCAAGATCGTCAAATAAATTGGAGAGAGCTGAAGAGTGACGGAGGACGGACTGAGCATAACATGGAGACAGACACATTCCTTCCTACAATGGACACAGTGCATTTGAAAGCACTTGGGTTAAAAAAAGGGGTTTTGTGGACTATGGATCAATAAAGTATTATACTTCTTCCATATGACTGTTGGTTTAAATCCTGTTGCTTCTGCAGCTTATGACCCACCTGTGTGCCTTAGGTTATTTACACAGTTAACCTAGTGCAAGAATCAATGTACACACATGACACTTCCCACttgaaaaaatactacagtttactatagaatactacagttcagaccccagtcctacctacctggttatggaaaatgtgctcttttagtatttctaCAATAGGTGGAGAAAGTGGAGAA

Function

NR:

description
IgGFc-binding protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985805.1 False 5117 mRNA 0.52 23 59057416 59084854
XM_036985807.1 True 5022 mRNA 0.53 23 59057416 59084854

Neighbor

gene id symbol gene type direction distance location
LOC118965657 NA coding upstream 384741 58672567 ~ 58672675 (+)
LOC110530233 LOC106599529 coding upstream 407438 58335194 ~ 58649978 (+)
LOC110530232 LOC106568852 coding upstream 789033 58165647 ~ 58268703 (+)
LOC110530231 LOC106568853 coding upstream 921238 57932295 ~ 58136178 (+)
trnag-ucc-2 NA coding upstream 1128970 57928375 ~ 57928446 (+)
LOC110530237 LOC106568845 coding downstream 103213 59188067 ~ 59211817 (+)
LOC110530248 crem coding downstream 663814 59748668 ~ 59768093 (+)
LOC110530249 LOC106568835 coding downstream 690876 59775730 ~ 59825064 (+)
LOC110530251 LOC106568834 coding downstream 740443 59825297 ~ 59828412 (+)
LOC110530253 LOC106568832 coding downstream 987279 60072133 ~ 60077499 (+)
G728059 NA non-coding upstream 75798 58981404 ~ 58981618 (+)
G727987 NA non-coding upstream 133433 58923730 ~ 58923983 (+)
G727973 NA non-coding upstream 145049 58912155 ~ 58912367 (+)
G727338 NA non-coding upstream 407900 58629167 ~ 58649516 (+)
G727265 NA non-coding upstream 542552 58508837 ~ 58514864 (+)
G728232 NA non-coding downstream 26308 59111162 ~ 59112437 (+)
G728281 NA non-coding downstream 96165 59181019 ~ 59181305 (+)
G728284 NA non-coding downstream 98840 59183694 ~ 59183964 (+)
G728297 NA non-coding downstream 134293 59219147 ~ 59219847 (+)
G728300 LOC106568844 non-coding downstream 169562 59254416 ~ 59257007 (+)
G728057 LOC100136012 other upstream 76145 58980931 ~ 58981271 (+)
G727348 NA other upstream 383411 58646859 ~ 58674005 (+)
G727161 NA other upstream 699281 58357039 ~ 58358245 (+)
LOC118965533 NA other upstream 1203784 57850799 ~ 57854417 (+)
G725907 LOC106581475 other upstream 1501934 57554723 ~ 57555482 (+)
G730206 NA other downstream 1955714 61040568 ~ 61042129 (+)
G730267 NA other downstream 2073956 61158810 ~ 61159193 (+)
G730377 NA other downstream 2285173 61370027 ~ 61810354 (+)
G730425 NA other downstream 2345009 61429863 ~ 61468746 (+)

Expression


Co-expression Network