LOC110530237 (LOC106568845)


Basic Information

Item Value
gene id LOC110530237
gene name LOC106568845
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 59188067 ~ 59211817 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613133.2
CTGCCTTGACAACGTTTCGTTTCCCCATCACTTCCGGGCTGATAACAAGGGCCGTTGATGCCTGCAGATTTTCATTAAAATATCTTAGTTTAATAAATACATTGGCGCCATAGCTGTGATGTTTTGGGAGTGATTTGGTCACAAAGCCTACAAATGAGGTTGGTGTATTGACGAAATTCTTCCAAGAGACGCAGGAATAGAGGATGATGAAGAGGCGAGCTGACTAAAACCAAGCTGTCTGTCAGTCCATCCAACAAACAGATCTATCAGAGGAACCACCAGTGCATGAGAAGGAACACAATCAGTTTTCGAAAGAAGTGTTGGGGTGTATCCCTCACACTTCCTGCCCCACCCACCTCAACTCAGACTCCACCCCGTGACCCCTGACATCCAAGATGAAACTAAAAGAGGACATGAACCCACTGCTGCTGCAGGTCTTCCGCTCGGTTGTCTGGGTCTACTCTGTCATCACCTTCCTGCCCTGGTACCTGCTCTCGGGCGCAGGAGCCAACCTAGACCGGGCGCGGCGGGTCAAGGCACGGTCAGTGAGCGGTCGCCCGGCGGGCCCTTACCGGGCGACCAACCATGAGGATGGTAGCCAGCAGAAGCTGGTGTCTTCCTTGCACCCAGGAGTGGACACCCTGGACAAGGTGATGGAGCATGGAGCGGCCAGGTTCCCAGAGAGGAACTGCCTGGGCACGAGAGAGGTGCTGAGCGAGGAGGACGAGCTCCAACCCAACGGGAAGGTCTTCAAGAagGTGATCCTGGGGGAGTATCAGTGGATGTCGTATGAGGAGACCTATCAGGCAGCAGTGTGTTTTGGCAGTGGGCTGGCCGCGCTGGGCCAGAGACCTCAGTGTAACATCGCCATCTTCTGTGAGACCAGGGCCGAGTGGATGATAGCAGCACAGGCCTGCTTCATATACAACTTCCCATTGGTGACGTTGTACTCTACTCTGGGCGGAGCGGCCATTGCCCACGGTTTGAACGAGACTGAGATCACCCACATCATCACCAGCAAAGACCTGCTACACAGCCGTCTCAAGGACATTCTGTTGGAGGTGCCTCGGCTGCAGCACATCATCGTGGTGGACAGTAAGCCAACCAGTTGGCCCGGCTTCCCCCGCGGCATCATGGTCCACAACATGGATGCCGTGCAAGAGCTGGGCTCCAGACCCGACAACATGGCGGTGGCGCGCCGGCGGCCCGTGCCCTCTGACATCGCTGTCATCATGTACACCAGCGGCTCCACGGGCATCCCCAAGGGCGTCATGATCTCCCATAGCAACATCATCGCGGGCGTCACAGGCATGGCAGAGCGCATCCCAGACCTGGATGAGACAGACACCTACATTGGGTACCTGCCACTGGCCCATGTTCTGGAGCTGAGTGCAGAGATGGTGTGTATCTCTCACGGCTGTTGCATCGGATACTCCTCCCCACAGACGCTAGCAGaccagTCGACTAAGATTAAGAAGGGCAGTAAAGGAGACACCAGTGTTCTAAAACCTACACTCATGGCTGCTGTACCGGAGATCATGGATCGGATCTATAAGAATGTGATGACCAAGGTGGAGGAGATGAGCAGTGTGCAGAGAACCCTCTTTGTGTTGGCCTACAACTACAAGATGGAACAGATCACCAAGGGCTACAAGACCCCGCTCTGTGACAGtcttgtGTTTAGGAAAGTGCGCTCGTTGCTGGGGGGTCACATGAGGGTGCTGTTGTCAGGCGGAGCGCCCCTCTCCGCTGCCACCCAGCGCTTCATGAACATCTGTCTCTGCTGTCCCGTGGGCCAGGGCTACGGCCTCACCGAGACCTGCGGAGCTGGCACCATCAGCGAGATGTGGGACTACAGCACAGGCCGGGTCGGCGCTCCTCTGATCTGCTCCGAGATCACCCTCAAGGACTGGGAGGAGGGCGGttactacagcacagacaagccaCACCCGAGAGGGGAGATTGTAATCGGCGGGCCCAACGTGACTATGGGTTACTACAAGAACGAGGTGAAGAACCGCGAGGACTTCTTCGTGGACAGCAACGGCCAGCGCTGGTTCTGTACAGGAGACATCGGGGAGTTTCACCCAGACGGGTGTCTCAAGATTATCGATCGTAAGAAGGATCTGGTGAAGCTCCAGGCTGGGGAGTATGTGTCTCTGGGGAAGGTGGAGGCCATGCTGAAGAACTGCCCTTTCGTAGACAACATCTGCGCCTACGCAAACAGTGACCAGTCGTACGTGATTGGCTTCGTGGTGCCCAATCAGAAGCAGTTAATGGCGCTGGCAGAGCAGCGAGGGTTAcggggcagctgggaggagatcTGTAACAACCCTGACATGGAGAGAGACGTTCTCCACATCATCACAGAGGCCGCTCTGTCAGCCAAACTGGAGCGCTTTGAGATTCCGAGGAAGATCCGTCTGAGTGCAGAGCCTTGGACACCGGAGACTGGCCTGGTGACCGACGCATTCAAACTCAAACGCAAGGAGCTCAAATCACACTATCAGGAAGACATCGAGAGAATGTACGGTGGCaagtaacacacacgcacacacaggcatacGCAAGGAATCTAACACACGCTATCTAGATGACATGAAAACTGGAGAGAATGTACGGCGGCAAgttacacacaaacagacacagccccccacccccccaccttccCAAGACAGAGGGGCCAAGCCAGTTGGAGGAGCATCAGTTGCTTGTCTTCGTCAAAAGTTTTTCGGGGTCTGTGTGTTGCTATGACGACGCTGGCATCATGGCGTGACTCGGCCGTGACACGGAAAATGACACGTTAATCTTGtcccgctcctctcctccttttctccttcccttctctctcctatcctccatCTAGCATGTTCTTCGGCCTCTGTGTGTAGTCCAGACACCTGATAGTAGAaaggatgtttttttttgtgtgaatgtgGCCTGGatcgtgttcattaggcatcaaacggaagaaaactgactgaaacagggagggactacctgaacttgtccaacaaGAAACGTTTTGCTATgttgtgcactaatgaatacgacTCTGAAAAATGAGGCCCTTCGGTTTAAACGTTCCACATCCAGGTTTGAATCTATGCAGGGATCCCTTTTATTGTATAAATGTTTTGGGATGTGGTGATGTTTTGTTCATGTTTCGTTGTCTTTCTTTTTTTAACGTAATCGGTTTGTCTTGGTTCGTTTCCGAAACCTATTCGATGAACATCTTGTGTCTGAGAGAAATTAGTGTTTTGCGAAACCATAAGATTTTTGTAACGCAACTCGCATTTTTTATTTGCTTTCcttatttcttgtttttttctgaATGGTTTGTTTCTCATTTATCTGTTACCAAACTCACATTTCCCTCGTCTGCCTCTAGGTCCTGAAGGTTGCTTCTATTCTATGGAAGAGTATGTGTTTACTGACTTGACTAGATTAAGTCCTATGTCACTCTGTTACAGAGTGCCAGTGATGGAATCTCCTCCCTGCTCTGTGCCCATGTGTGGCTACGGGCTGATGTGATGTGCCTGGGTTGGCTGGTGGAACCTGTTTCTCGTAATGTAGCCTGATCCTGGATCGGTTTTTACTTTAGCCACCTCCTCTTGACTATTTGTGAGATGTCATGAGTTGACCCAGGCAAGAAATTATCTGGGACCAGGTAAgtaatgatggggggggggggggggctacggGGAAGTAGGATGCAGTTGCCCTGTAAAGCTGATCGAAGTTTAGTTTCTCTTCCCTGTGGTTGAGGCTAGGATGGGGAGAGGACAAGCTGAACCTTGATCTGTGCCTAAAGGGCAACTTCTCAGCACGCGACACCAATCCTACTGTGTCACTTAACCAGTAGGAGGCCGTCTCTGCCACTGGTTCATCTTTGAAACATAATCTGTATAGTAATGTCCAAATTTACaggggtgtgtatgtgtgatttgtgctgatgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgttcgTTCTCTGACCGTGAGCTTGTTCCAAGTTCCCTATGTCTCTGTGAAGCCCGCTGCATGCCAACCCCACCTGACCTGTAGAAGTCTGTTACCTTTCAATGTTTCCTCCAGCAAAACGATGTTACATACACAGTGTCCTGCTAAACCAGGTCTGTGGCTCCATAAACCATGTTATCACCTGGACGATCTGGTTCCATAAAACCACGTAGATTGTCTTTATTGACATTGTGTACCGCATGGACGTCTCCTAAGAGAGCCAATGGCTCCCAGTCCAGATCTGTAGCCGTTTGCCTTTTTTTAGTTGCTCTTcggcagactgtgtgtgtgtgtgtcatccaacGGTAGTCCTATCTACCCCGATATCCCTGTTCGTATTACAGGAATGCATTGTCCTATTTCTTTGTCATAGCTCTAGTTACTGTTGCTATTATTGATGAAATATGAAATGCAGATTGAATGTGCAATATTTATACGAAATACAAATTCTAAAACCTAAAGTATGTAAAGGAAAAAtgcacagagagagcgagcccCTTCACAGTGTATGAATGTGTGGGTGCGGGGCCTGTCTCTTTCCAATTAAATGTACAAAGAGAACCTGGAGGACAGGCGGACGGACAGAAAACATTGTTGTAGAAGTAGTAACATATAGCCTCTTTACGGTGTGATATTAGTGCCAACAGAAATGTAATCTGAATTCAATCATCTTGAATTCATTCAGATTTGTCGGCAGTAATATGACTCTATACTTATTTTTCTGTATTGTGAAAGTACTGTACCAATTATAGTAATGAAGACTAATATTTTGGCCTTGTAAAAGAAAAATACAATGGTGAAGAATAAGGCACTACAGGTGAACAGATGTATGTCTCCGGGAAGTTATTTGGGTTGCATGATTCCTTGTGAATGCACTATATACATTTGTGACGTATAATGTATTCAGAAATAAAGTCCAAGATGAAAAGTCATGTGGGCAATTCCATATGAGATTTGCTCAGAGATATGTCATCCTTGGAAAGGTACTTTGGGGTAAGGAGGTTTGGCATACCTTTTTAAAGTTGAAATCATTGATTTAAAAGTTGGAAAGTTCATGACATTTTTGCTTTGCCCCAGGCCTTTTGAAGATATGACCCATTTTATACATTAATGGACGTTATAGGACATAACCAACTGtgcaaatcaccagcagagggagtTCTGGATCCGTTCCCACGTGAACTGTGTTGTAGATGCTCCAAAAAGAGATCATCATTTCAAAAGTAGCAGAGCGACCACTCTGGAAATGTTATGTACTTGTAGAGTATATTGTTTTTAAACCATTTCCAATACTGAACAAAATTCAAAAAGGGGACTTTTTGAGACATTTACGATAAGGCCCGGGTAAGGCCAAAATTTCACACATTTCCCAACTTTTAAATGAGTTATTTCTCAATAATTATTTTGGGTACAGATGTCAATGGTATTCCAGACAAAATGAAGTTTTTATTGATTTCATTTCAGGAAGATTAAAAGCATCATAAATGTCTCTGGGCCAATCTCGTTTGGAATTCCACGTACATTAAAGGCTGCCATAAATGTATTGTCTGCAAATGAATTACTGTGTATGagcaatgtacagtatataccgtAGAAGAAGAACGGCTTGGATATTTAGCACAAGGGATATTTCAGCATTTGAAAAGGACCCTCGGTTTTGGGAAGTAGTCCAAAACACTGATAATGTTATGAACGAGGAACCCAGGTGCAGGCTGGTTCCCGTTCTTCTTACAGTTCCTGATATTTCATTGGTTCTTTGTATTCAATTTACCAACCAATGTCTGTCCAGTCTGCTGCTTTGCTATCCCATACCAGGCCACAATTGGTTAAGAAGATTTGTTCATAGGAATATACAAAGTGCTGTATCTTGAGTGTTTCTCTGAGGTTATACGCAcagacatatacacatacatacacacacgcctacatacactaccattcaatgGTTTAGGGTCACTGAGAAATTTCCTTTTTTTTTGCAAGAAAAGCAAAATATTTTGtttattaaaataacataaaattgatcagaaatacagtgtagacattgttaatgttgtaaatgtctatggtagctggaaacggcagattttatatggaatatctacatagccgtacagaggcccattatcagcaaccatcactcctgtgttacaatgacatgttgtgttagctaatccaagtttattgttttaaaaggcgaattgatcacggtagtgtacatacctacatacctacATTACATGTCTTAGTAGTGAAGTCATCCACTTTAACTACTGATGTACCTAAAGACAAGGAACAAAGTTTGGTGTACAGATTAATTTGACCTCTCGCATTGTTTCTCATAGTAAATATGTTGGAAGGGGAGGggttaatatgatcaaatttccTAAAGATATACCAGTTGTGCAGGTGTAAAACCTCATTTAAACCTATTTGGTCTTTGTTGTTCACCAGTTTTTTGGGGTGGGTCTTTTTCCTTCTCGTTTAGCGTGGGTTACTGGCCTTGTGACATCATGGGCTGTTTGCAAATGTTTCCTTCCTTATTTATTGGTAATTTGGCCTTGGAAAATTGTCATGAAAATAAAAGTTGTGATTGGTCTAAAAATGCCCA

Function

NR:

description
long-chain-fatty-acid--CoA ligase 3-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01897 ACSL, fadD; long-chain acyl-CoA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613133.2 True 6662 mRNA 0.47 15 59188067 59211817

Neighbor

gene id symbol gene type direction distance location
LOC110530235 LOC100136455 coding upstream 103213 59057416 ~ 59084854 (+)
LOC118965657 NA coding upstream 515392 58672567 ~ 58672675 (+)
LOC110530233 LOC106599529 coding upstream 538089 58335194 ~ 58649978 (+)
LOC110530232 LOC106568852 coding upstream 919684 58165647 ~ 58268703 (+)
LOC110530231 LOC106568853 coding upstream 1051889 57932295 ~ 58136178 (+)
LOC110530248 crem coding downstream 536851 59748668 ~ 59768093 (+)
LOC110530249 LOC106568835 coding downstream 563913 59775730 ~ 59825064 (+)
LOC110530251 LOC106568834 coding downstream 613480 59825297 ~ 59828412 (+)
LOC110530253 LOC106568832 coding downstream 860316 60072133 ~ 60077499 (+)
LOC110530254 LOC106568831 coding downstream 944525 60156342 ~ 60168950 (+)
G728284 NA non-coding upstream 4103 59183694 ~ 59183964 (+)
G728281 NA non-coding upstream 6762 59181019 ~ 59181305 (+)
G728232 NA non-coding upstream 75630 59111162 ~ 59112437 (+)
G728059 NA non-coding upstream 206449 58981404 ~ 58981618 (+)
G727987 NA non-coding upstream 264084 58923730 ~ 58923983 (+)
G728297 NA non-coding downstream 7330 59219147 ~ 59219847 (+)
G728300 LOC106568844 non-coding downstream 42599 59254416 ~ 59257007 (+)
G728329 NA non-coding downstream 72912 59284729 ~ 59284967 (+)
G728330 NA non-coding downstream 80662 59292479 ~ 59292697 (+)
G728250 LOC106568842 non-coding downstream 81737 59293554 ~ 59293847 (+)
G728057 LOC100136012 other upstream 206796 58980931 ~ 58981271 (+)
G727348 NA other upstream 514062 58646859 ~ 58674005 (+)
G727161 NA other upstream 829932 58357039 ~ 58358245 (+)
LOC118965533 NA other upstream 1334435 57850799 ~ 57854417 (+)
G725907 LOC106581475 other upstream 1632585 57554723 ~ 57555482 (+)
G730206 NA other downstream 1828751 61040568 ~ 61042129 (+)
G730267 NA other downstream 1946993 61158810 ~ 61159193 (+)
G730377 NA other downstream 2158210 61370027 ~ 61810354 (+)
G730425 NA other downstream 2218046 61429863 ~ 61468746 (+)

Expression


Co-expression Network