XLOC_002585 (BX294661.1)


Basic Information

Item Value
gene id XLOC_002585
gene name BX294661.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 7870627 ~ 7892684 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004811
CAGTTTAGCTGATTAACAAAAGTAGCATCTCCACATGACTATATAGATTTATATGATAGATTTATATGAACTTATTACTGTAAACTGTACCAGTCATGTATAATTAAAATAGTCAAACAGTTATTAGTCAATAACTTACCGAACATCCAGTCGAACTCAAGGTTTCATTTCATCCACATCATAACAAACAATACCCGCCATTCACCACTAGATGGAGCCAAACACCCTTTCATTTTACACAAACCTCCATCACACGGTGCCATTGACACGTCTGGCCTCTGCTTCCTCAGATAAATGCTGCAAGCGTGTTTATGTCTCAGTTTCCTCTCCGAAAACGGTGAGCAGGTGAGTCACTGCTAGAGGGACGTCAGGACGCCAGCATTAGGACGCATCCCGttgactgatgtttttttttatttttccttctgAAGCCCGGCTCAGTCCCATGTGGCCAGGGTTAAAATGTCTGGCGGTTCGGCAGTCGGAGGCCCAAACACCAAAGATGTCAAACAGATGCTGCTGGACTGGTGCCGTGTGAAGACTGAGCCATATGAGGTGAGCCGTGACGCTCATCTGTTTAAAGCGCGAGAGATGCGCGTGACACCCTTCACCTCGAGACACTGCAGCCTATAAACAAGTGTCGTTGAACAAACAACTTCAAAAGACCTAAACAGCCTGATTCTCAAACAGACTTGCGTTTATCGCATGGGATGTCCACCCCGTTAGCTTGACAGGCGGTTAATTATCTCATCCGAAGCGCGGGCTCGATCGTGTCTAATTGACACGCGCCTATAT
>TCONS_00004812
GGGAGAGCACCATTTATCTTCAAGTTTTCTTTCCTCGAGTGCACAAATAGTCTGATAGCACTTTTGAAAGTGACAGTGTTTAGATTAAACGCTGACGCACTGTTATCTTGAGAGCAGAGACAGGAAAGGGAATGATCAGGACAAGCAGTGCCAAATAGTTTACTAATACTTAATGTCTCGTTCTAATAGAgacttttgtgtttgttttgtttctggtcCTTTCAAAAGTGGGTGATGATGGGAGGGGTTACTGAAAAACTCATTCAGTCCAGCATCAGAGCAGAGTATTATATGGTAAATCCCTCTGTTCACCTTTCTAGATCACACTGCAAGAGCTTTCCTCTCGGACGTCCGGACCGAGTCTGCTGTCACTGAAGATGGAGGCTGAGAAGGGAACATTAGAGGCAGGTACCAAAGAGCAGGCCGATACCATGGGTCAACTGACAGCAGAACAGCTGGCCGCTATAGAGGATGAAGAGATCCTCAATAACATGAACGGCGTGATCGTGAGCGGGCGGCCCGCATGGAGAACCTGCGTCAGGGCACTGGAGGAAAGACATCTGCTAGCCTCAGTAAGGATCAGAAAGCCTCTAATGGCCCCGGCGGTGCTCAATTCAACGCACACAGAACAGCTCAGGCAAAAACACTTTCACAACCAACCTCAGTTTCCTCTCCGAAAACGGTGAGCAGCCCGGCTCAGTCCCATGTGGCCAGGGTTAAAATGTCTGGCGGTTCGGCAGTCGGAGGCCCAAACACCAAAGATGTCAAACAGATGCTGCTGGACTGGTGCCGTGTGAAGACTGAGCCATATGAGgGTGTGAACATCCAGAATTTCTCCTCTAGCTGGGCTGACGGTCTGGCCTTTTGTGCACTGGTGCACAGGTTCTTTCCAGAGGGCTTTGAATATTGTACTCTTAACCCTTATGACCGCAAATCCAACTTTGAGAAGGCATTCAAGACTGCAGAGAGACTAGCCGACTGTCCTCCCCTGCTGGACGTTGATGACCTGATGCGGATGCGGGAACCCGACTGGAAGTGCGTTTACACGTATATCCAGGAGTTTTACCGCTGCCTAGTAGAAAAAGGCCTTGTCAAGACTAAAAAGAAGATGCCATAGAAACACAAAACTCCCACACTGTGAGTGTTTTCACGGACCAAGAGACTACAACAGGCACACAACACAGCATACATGTGACCTGAAGCTTTGCCAAAGACCAAAGAGTCTATTACATTCTTATGCTCGTCTCTGTTTCATATCAGCACATGCAGTGGATGAGGATTATAACCTGTATGTTTGGCACTAGGGTACAGCTGGGGCTCTGAAACTGCACATTCCAGCGAGATTACACATGCATTAATCTCAGTATGTGCTCAGagattgtgtaaatgtgtgtgtgtgtgtgtgtgcgcgaatgtCTTTTTATGGTACTGCTACTCCCCATTTTGAAAGTGCTCCAGCAGAGAGACATCAGGCTTATAAGGGCATGAGATCTAATGCTGAATTATACTTATCCCTGATTTATCGTTTGTTTAAAAATACTGACGGGCACTTGTACTGTTATGTAAAGGAGTTCAGAAAAGAAAACAACGTTTTAAAAGGGCTACATTTAGAATTCAGAAGCATGCGTTATTAGCGACGCCGGTGGCTCTTAAGTGAACtgcagctatatttttttcatgacTTGACATGATCCAATGCCTTCAACATTCTGAAAATATGTACTGCTTACGATAGTTAGGAAACCAATAATATACAGATAAATGAGCGCATAAACATTTTTCATactcctaaaatatatatattttacttttattcatttaaattttttcaaaaacatcCTGAGTCCTTCGCACAAAATTGGTCTATTCTACACACTTACTAAGACAACCTAGGAAGTAAGTCAGAATGTTTATTACAATCTATTTGAATATCcccatcaaaaaaaataaataaataaaaaa
>TCONS_00004813
CTGCAAGAGCTTTCCTCTCGGACGTCCGGACCGAGTCTGCTGTCACTGAAGATGGAGGCTGAGAAGGGAACATTAGAGGCAGGTACCAAAGAGCAGGCCGATACCATGGGTCAACTGACAGCAGAACAGCTGGCCGCTATAGAGGATGAAGAGATCCTCAATAACATGCTAGATAAGGCTGTGGATTTCGAAGAGAGGAAAATGATCCGGGCTGCCATGAGAGAACTGCTCAAGAGGAAGAGGGAACGGCGTGATCGTGAGCGGGCGGCCCGCATGGAGAACCTGCGTCAGGGCACTGGAGGAAAGACATCTGCTAGCCTCAGTAAGGATCAGAAAGCCTCTAATGGCCCCGGCGGTGCTCAATTCAACGCACACAGAACAGCTCAGGCAAAAACACTTTCACAACCAACCTCAGTTTCCTCTCCGAAAACGGTGAGCAGCCCGGCTCAGTCCCATGTGGCCAGGGTTAAAATGTCTGGCGGTTCGGCAGTCGGAGGCCCAAACACCAAAGATGTCAAACAGATGCTGCTGGACTGGTGCCGTGTGAAGACTGAGCCATATGAG

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-245 Predicted to be involved in actin cytoskeleton organization. Predicted to be part of filamentous actin. Predicted to be active in microtubule organizing center. Orthologous to human SMTN (smoothelin).

Ensembl:

ensembl_id ENSDARG00000074652 ENSDARG00000092096

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004811 False 795 processed_transcript 0.46 3 7870627 7892684
TCONS_00004812 False 1962 mRNA 0.44 7 7875076 7892192
TCONS_00004813 True 564 processed_transcript 0.54 6 7881329 7891866

Neighbor

gene id symbol gene type direction distance location
XLOC_002584 inpp5ja coding downstream 12074 7831439 ~ 7858553 (-)
XLOC_002583 mat2aa coding downstream 48941 7810455 ~ 7821686 (-)
XLOC_002582 mpx coding downstream 84682 7778870 ~ 7785945 (-)
XLOC_002581 si:ch73-340n8.4 coding downstream 98193 7769814 ~ 7772434 (-)
XLOC_002580 loxa coding downstream 113751 7738540 ~ 7756876 (-)
XLOC_002587 slc35e4 coding upstream 8328 7901012 ~ 7913591 (-)
XLOC_002588 osbp2 coding upstream 24036 7916720 ~ 7974155 (-)
XLOC_002589 ewsr1a coding upstream 82901 7975585 ~ 7988417 (-)
XLOC_002590 NA coding upstream 88435 7981119 ~ 7983744 (-)
XLOC_002591 atp6v0a2a coding upstream 96062 7988746 ~ 8033468 (-)
XLOC_002575 BX537303.2 non-coding downstream 358504 7512008 ~ 7512123 (-)
XLOC_002572 NA non-coding downstream 616729 7238244 ~ 7253898 (-)
XLOC_002571 NA non-coding downstream 809090 7050325 ~ 7061537 (-)
XLOC_002570 CABZ01061993.1 non-coding downstream 861137 7009374 ~ 7009490 (-)
XLOC_002566 BX511100.4 non-coding downstream 1143513 6725657 ~ 6727114 (-)
XLOC_002602 NA non-coding upstream 726034 8618718 ~ 8621543 (-)
XLOC_002603 NA non-coding upstream 746237 8638921 ~ 8657677 (-)
XLOC_002605 BX571955.1 non-coding upstream 783206 8675890 ~ 8677828 (-)
XLOC_002606 NA non-coding upstream 949014 8841698 ~ 8858568 (-)

Expression


Co-expression Network