LOC110530251 (LOC106568834)


Basic Information

Item Value
gene id LOC110530251
gene name LOC106568834
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 59825297 ~ 59828412 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613160.2
cataggctctggtcaacagtagtgcactgtacagggaatgggggtgccatttgggaagcaccaCCATTGTCATTAATCACTCGGCTATTTACGCACGAAACTTGACGTTCACGGTCAGGAGGTTCATGGATATTGAGGCTCATGGCTAAGACCATCACCATTTGGGGACAGAGCTACGTTCTCATTATTGTTCTATAATCCTTAACCTGGTAACCTTCAATCTGAGTGCCATTATAGTCACTATGCTACTCTGAGTTCATGTAGACCCAACCAGTTGTCTGAGCTCAGTGTAATTTGTTGAAATATCCTAGCAATGCTTTGATGGTAACATGATTTTGGcctgatgatgataataatagcGCAGAGGTCCCTGGTGTCTTGTCACTAAGCTGTTTATAACACTTGAGAGAGATCtatagtggacacacacacacacacacacacacacacacacacacacactggggaacAGCTAGGGAACTTACGCTGGAGCCACTTGTCTACGACTCAATGAGACCGTTGGATTTGAATTGGACTGAATTGAATCGAAGTGAATTGGATTGATCAGACTGAAATAGACCCTCGCTGAGTAACCTGGATTGGAGGAAGGTATACAGACCGTGGGATGAACTGCTTGTTTACACCATGGAGAAGACGCGCCTAATGGAAATGCTCTTTATTACTTTCAATCACAACGTCACTTTCCTGGGGAAGACGTGGTTGATCTTAATGGTGGTCCTGAGACTACTCATCCTCCTGTTCTCTGGCTATCCCCTCTTCCGGGACGAGCAGGAGCACTTTGTGTGCAACACCATCCAGCCGGGCTGCACCAACGTCTGCTTCGACGGCTttgctcccctctccctcttccgctTCTGGCTGTTCCAACTGATCATGCTCTGTCTCCCTCACATGATGTTCATTTTGTATATCGTCCACAAAGTATCGTCAGCTCTTCGTATCGGAGGGAACTATTTCCCCGGCAGCAGAAGTCCGGCAGGGGCTCTGTGTACCCATCAACATTCCCTACCAAAAGGGACGCCTAACTTTCTAAGGGCCTACCTCCTGGACCTGCTACTACGTATCTTACTGGAGGTAGCGTTCAGTACCGGACAGTACTACCTCTATGGCTTCTCTGTCCCGAGGCGCTTCCAGTGCTATGAGTCCCCCTGTACGTCCATGGTGGAGTGCTACATATCCAGCCCCACAGAGAAGACCATCATGCTCAACTTCATGCTGGGGGCTGCCTTCGTGTCTCTGCTACTGAGTCTGGTGGACTTGATGTGCTCCGTGCAGCGCATGGTgacacaggggaggagagaggaggagctgaAGGAAGGCGGACTGTTCATGAATGAAGGAGTTGGGGAAGATATTGAAGTCCTGTACGCCCAGAACGCTCTCAAAACTGTCCTAAAGAGAGGACAAAGTCACATTGACAAACCGACCTCGAGGTGTATCCCAAACAGTGACCTTTCACACGGACGAGTGAGAATAAACAATGAGACCCAGGTAAGGGTGGCTGCCCCACCCCTGCAGGGGAGAAGGCCACCACGGAGAGCTGCAAGGATGGAGCCTCCGCCGCCATTGAACGGTCGCTTTGTTCATCCAAACCACATCTCCCATTCATCTCCAGTCCCCCTCTCCCGGGGGTTAGAGAGAAACCCAGTGGTAGTCTCACGCCAGTCTACCCCCTCGCCAATGAACAGTGGCCGGAGGCATGGCTGCTACAACGTGGTAGACTCAACACTCCTGGAGCAGCATTATGATAGTGCAGAGTCCCGTGATAGACTCCAGGAGGAAGTCATCCTGCAGGAAGTGGGGGTAAGGGGCACCTCAAGCTCCTCCAGTGGTTCTTCTTCCTCGTCAGATGCGCAATAAAGTTTGTATTTTAATTGTTTAAATGTACGTAATTCTATGCAATTCTTGTTTCTTTTTAGTTAAACATTGTTGATGATTTCCTCTACTTACACTTGAATGAATTTTCCCCCTGAATGTAATAATGGGCTATACATTACATTTTGCTGACTTTATACTTAGTGACCACATTCTGTCAATAGAGCTGTTTGTGTTGGCTTACAGAATTAGAATGAGTGACTCAAACAATGCCAGTTGACCTTCAAGGACAATGGTGGCAGCACACAGCTGTTGTTCAGCTCAAATGTTTTTTCATTGGCTTGACCAACAACCGTCAGACAAGACTGACATGCTCCGGCCCCACCGAAGCCAACGTCACTTGGAGAACTGAGGGTCACAAAGGAACATTACTCTGCTGTGGCATCCAAGGAAACCGTAGACCCAAAAGAGACCTCGGGAGAGGTCAATGGCCTTAAAGGAGGCCAGTGATGGAAGACTTAGGTTTGAGGTGAATGGAAGAGCACCTGACTCCTAGACAAATACACAAGGGCAGAGACTCAATCCAAGGTGTGTTACAGTGAACTGCACTGTACTGTCAACGATGTTCCCGACCTTTGCGGAGATCAAGTTCACAGTAAATACCGTGGATGACAGCTCAATTGTAGATTACCTTAAATTAAAAGTCAAGAACAATGCGCTTCTCTGCAATGCACTTTGGATTGAATCGTGTCCAAAGCCTTCATCCAGTATAGCAGTAGTGTAGGATTTCAAACGATCTTGATTTTTTTTAttctacttttttttattttcttttttttaaataaatcattTCAACTACcatagggatttatgtgttctgtTTTTTAAGTGAATGTACAGACTATATTAAACATTTTAGTACACATGGGACTGCTATAATTATTACCTTCTTTGAAATCAGGGCTGTAACCAGAGTGAGTTTTTTTAGGGAGGT

Function

NR:

description
gap junction delta-4 protein-like

GO: NA

KEGG:

id description
K07630 GJD4; gap junction delta-4 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613160.2 True 2830 mRNA 0.47 2 59825297 59828412

Neighbor

gene id symbol gene type direction distance location
LOC110530249 LOC106568835 coding upstream 233 59775730 ~ 59825064 (+)
LOC110530248 crem coding upstream 57204 59748668 ~ 59768093 (+)
LOC110530237 LOC106568845 coding upstream 613480 59188067 ~ 59211817 (+)
LOC110530235 LOC100136455 coding upstream 740443 59057416 ~ 59084854 (+)
LOC118965657 NA coding upstream 1152622 58672567 ~ 58672675 (+)
LOC110530253 LOC106568832 coding downstream 243721 60072133 ~ 60077499 (+)
LOC110530254 LOC106568831 coding downstream 327930 60156342 ~ 60168950 (+)
LOC110530256 LOC106568829 coding downstream 403899 60232311 ~ 60268663 (+)
LOC110530260 LOC106568826 coding downstream 492546 60320958 ~ 60346708 (+)
LOC110530261 LOC106568825 coding downstream 525526 60353938 ~ 60597494 (+)
G728628 NA non-coding upstream 6297 59817263 ~ 59819000 (+)
G728609 NA non-coding upstream 54647 59770445 ~ 59770650 (+)
G728583 NA non-coding upstream 90761 59689483 ~ 59734536 (+)
G728584 NA non-coding upstream 90964 59682037 ~ 59734333 (+)
G728580 NA non-coding upstream 104747 59676936 ~ 59720550 (+)
G728638 LOC106568833 non-coding downstream 6479 59834891 ~ 59837406 (+)
G728642 NA non-coding downstream 15474 59843886 ~ 59844122 (+)
G728643 NA non-coding downstream 16373 59844785 ~ 59844994 (+)
G728647 NA non-coding downstream 22698 59851110 ~ 59851391 (+)
G728648 NA non-coding downstream 25791 59854203 ~ 59854520 (+)
G728057 LOC100136012 other upstream 844026 58980931 ~ 58981271 (+)
G727348 NA other upstream 1151292 58646859 ~ 58674005 (+)
G727161 NA other upstream 1467162 58357039 ~ 58358245 (+)
LOC118965533 NA other upstream 1971665 57850799 ~ 57854417 (+)
G730206 NA other downstream 1212156 61040568 ~ 61042129 (+)
G730267 NA other downstream 1330398 61158810 ~ 61159193 (+)
G730377 NA other downstream 1541615 61370027 ~ 61810354 (+)
G730425 NA other downstream 1601451 61429863 ~ 61468746 (+)
G730447 NA other downstream 1638941 61467353 ~ 61468047 (+)

Expression


Co-expression Network