LOC110530253 (LOC106568832)


Basic Information

Item Value
gene id LOC110530253
gene name LOC106568832
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 60072133 ~ 60077499 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613163.2
GGGAAGGCCGTCTGTAAGACATTGCATAGTGAAGTTTACAGAGCGTCGACGGACTTTCAGCGAGTTCACTGTTTGCTATTAGAGCAAGCAAGGAAGATCGCTCTAGGAAGAACACTTGCGCTATCACTGCTGTAAGCGGCATTTATAGGAGTGAGATGGATGTTATTCCTATGTGCAGCATCTTTCAGGAGCTCCAGATAGTACATGACACCGGATACTTTTCAGCTTTACCATCTCTTGAGGAGTACTGGCAGCAGACATGTCTGGAGTTGGAGCGGTACCTCCAGAGCGAGCCCTACGTCTCGGCCACAGACATCAAGTTTGAGACGAGTCAAGAGGATCTCTGGAGCAAACTGATCCTGGCCTGCGGGGACAAGGCCGAGTCCGACCCAAAGATCCACACTCACATTAAGGAGGAGGACAATCAAGAGGCCAACAGCTTTAACTCCGACGCCAGCAGTGAAGCGTCTGACAGCTCCGAGGAGCTCTCACCTCCCCTCGACTTCACCTCCAACCCACTAAGTGACAttatgggagagggagaggacctGAGTTCCATGGTTATCAGCACTCCGCCATCTTCTCCTGAGGTGAACAAGGAGGCCCCCTCCATATCCTCCCAGGTGTGGAGTGGTATACAGACAGTGATGCACTCGCCAGGGAAAATACGGACAGGGGGCATTGGTGGACGAACGGTTGAGAGGGGAAGCTTAGCCAATGGGGAGGCTTCTCCAGACGGGAGGAGGCGGGTCCACAGGTGTCATTTCAATGGATGCCGAAAGGTTTACACGAAAAGTTCCCACTTGAAAGCACACCAGCGTACACATACAGGTGAGAAGCCTTACAGGTGCTCATGGGAAGGCTGCGAGTGGCGTTTTGCACGCAGTGATGAGCTAACCAGACACTTCAGGAAGCACACTGGGGCAAAGCCATTTAAATGCAGTCACTGTGACAGGTGTTTCTCTCGCTCGGACCATTTGGCGCTTCACATGAAGAGACACATCTAAGCGGTGGGCCCCGgggcagaggagagcagagcggTGTTGAGCGATGGTCCTGActgtctcctaacctgtctgtGGGGAGGCTGCAGTGCCCTGAGAGGGGAGGAAGGCTAGCGAGGGGAGCGTGCTCCAGTGAAAAGCATGCAGGCCATTTTTGCACCATACTTAGTGCCTCCAAGACCTCTCAGAGGAAAGAGCTCTGAAAGGTCGACACATTCTGAAAAATATCACGAAAACCACCATGGATGAAGGAGAATTAAGAAAGTcactagagagaggagaaagaaaataTCTGAGAGGACAAGAAATAACGTTTTTTTCTCTGTATGGTGTCTGTTTGCGGAGTTAGTTCCTAGTTTGAAAATATGCAGTGGTACTACTCCAATAAACGTGTGTTGTTTTCTGTGAGCatgtggactgactgactgtgagCCTGCTGTCAGACTGCCTGTGACTGGGTGCCTGTCTTAGAATGCCTGTAACTGGGTGCCTGTCTTAGAATGCCTGTAACTGGGTGCCTGTCTTAGAATGCCTGTAACTGGGTGCCTGTCTTAGAATGCCTGTAACTGGGTGCCTGCCCTGTGGATGTACGACTCCTGAGTAGATGGCTTGTGTTGTGACCTGAATGGCATTGAGGGGATGATGAGTTTTTGACTGAGGTTTTATTGTCTCGTGGTCATGAATGAATGCAAGCAAAGGAGTTGTTGTGCTCTTGTGAGGAGCGCTGGTTGAGTCTAGGCTGGGTTTggcagtgtgtgtgcgtctcAGCCGTCAGTTTtgaggtttgagagagagagcatcactaTCCGAACTGAGGTGGTACATGCTCCTAAACGAGgtttggggaggggaggggggttgaTGTTTGGTGCAGCTATTAAATGTGCAATGTATTAAGTAGCTTGTCTCAAAGTACATGCTACAAAGCTAATTTGTTGTCCATTGTGTAAGCTCAGTATCTAAAGGCTGTACACAACATTGATATATCATTATACCAGAAGTTGCATGATCTTGGGTTTGTTTGTCACTCGATTAGGCCTACTTATAACACAGGCAAATCCCAATAATGAGCAGCTATGCATCCATTTTACTCCGTAGATACCACAGTATTGTACAGAAACATAAAGCAGTGATGTATTTGTTTCCTTCTTTTCTTTTCTATGTTTGGAGATACCACTATTGCTTGGCAACTGTGTTGATCATGGGATAGTTTTATTTATATTCAGTTTAATAActaatttctttatttttgtcCTCTTGCTCTTCTCTTTTTCTATATCTGTAAATACACTGTGACCTTAATGATGCCTTATGTAAGTGGCCTTGTCCAGATAAATAGATCACtcacggagggggggggggggggggggggggggggttaaatgcGGTAGTGTGTGATTGAATAGCTTTATTAAGGCTCCGATTCATATGGTTGCACCTTTTTCCCTTTGTCTAGAAATGATGGTTGGTCTGAAGACTCTTGAATAAAAGTTAAGCTTTATACTTA
>XM_036985834.1
CAGAGCGTCGACGGACTTTCAGCGAGTTCACTGTTTGCTATTAGAGCAAGCAAGGAAGATCGCTCTAGGAAGAACACTTGCGCTATCACTGCTCGGCATTTATAGGAGTGAGATGGATGTTATTCCTATGTGCAGCATCTTTCAGGAGCTCCAGATAGTACATGACACCGGATACTTTTCAGCTTTACCATCTCTTGAGGAGTACTGGCAGCAGACATGTCTGGAGTTGGAGCGGTACCTCCAGAGCGAGCCCTACGTCTCGGCCACAGACATCAAGTTTGAGACGAGTCAAGAGGATCTCTGGAGCAAACTGATCCTGGCCTGCGGGGACAAGGCCGAGTCCGACCCAAAGATCCACACTCACATTAAGGAGGAGGACAATCAAGAGGCCAACAGCTTTAACTCCGACGCCAGCAGTGAAGCGTCTGACAGCTCCGAGGAGCTCTCACCTCCCCTCGACTTCACCTCCAACCCACTAAGTGACAttatgggagagggagaggacctGAGTTCCATGGTTATCAGCACTCCGCCATCTTCTCCTGAGGTGAACAAGGAGGCCCCCTCCATATCCTCCCAGGTGTGGAGTGGTATACAGACAGTGATGCACTCGCCAGGGAAAATACGGACAGGGGGCATTGGTGGACGAACGGTTGAGAGGGGAAGCTTAGCCAATGGGGAGGCTTCTCCAGACGGGAGGAGGCGGGTCCACAGGTGTCATTTCAATGGATGCCGAAAGGTTTACACGAAAAGTTCCCACTTGAAAGCACACCAGCGTACACATACAGGTGAGAAGCCTTACAGGTGCTCATGGGAAGGCTGCGAGTGGCGTTTTGCACGCAGTGATGAGCTAACCAGACACTTCAGGAAGCACACTGGGGCAAAGCCATTTAAATGCAGTCACTGTGACAGGTGTTTCTCTCGCTCGGACCATTTGGCGCTTCACATGAAGAGACACATCTAAGCGGTGGGCCCCGgggcagaggagagcagagcggTGTTGAGCGATGGTCCTGActgtctcctaacctgtctgtGGGGAGGCTGCAGTGCCCTGAGAGGGGAGGAAGGCTAGCGAGGGGAGCGTGCTCCAGTGAAAAGCATGCAGGCCATTTTTGCACCATACTTAGTGCCTCCAAGACCTCTCAGAGGAAAGAGCTCTGAAAGGTCGACACATTCTGAAAAATATCACGAAAACCACCATGGATGAAGGAGAATTAAGAAAGTcactagagagaggagaaagaaaataTCTGAGAGGACAAGAAATAACGTTTTTTTCTCTGTATGGTGTCTGTTTGCGGAGTTAGTTCCTAGTTTGAAAATATGCAGTGGTACTACTCCAATAAACGTGTGTTGTTTTCTGTGAGCatgtggactgactgactgtgagCCTGCTGTCAGACTGCCTGTGACTGGGTGCCTGTCTTAGAATGCCTGTAACTGGGTGCCTGTCTTAGAATGCCTGTAACTGGGTGCCTGTCTTAGAATGCCTGTAACTGGGTGCCTGTCTTAGAATGCCTGTAACTGGGTGCCTGCCCTGTGGATGTACGACTCCTGAGTAGATGGCTTGTGTTGTGACCTGAATGGCATTGAGGGGATGATGAGTTTTTGACTGAGGTTTTATTGTCTCGTGGTCATGAATGAATGCAAGCAAAGGAGTTGTTGTGCTCTTGTGAGGAGCGCTGGTTGAGTCTAGGCTGGGTTTggcagtgtgtgtgcgtctcAGCCGTCAGTTTtgaggtttgagagagagagcatcactaTCCGAACTGAGGTGGTACATGCTCCTAAACGAGgtttggggaggggaggggggttgaTGTTTGGTGCAGCTATTAAATGTGCAATGTATTAAGTAGCTTGTCTCAAAGTACATGCTACAAAGCTAATTTGTTGTCCATTGTGTAAGCTCAGTATCTAAAGGCTGTACACAACATTGATATATCATTATACCAGAAGTTGCATGATCTTGGGTTTGTTTGTCACTCGATTAGGCCTACTTATAACACAGGCAAATCCCAATAATGAGCAGCTATGCATCCATTTTACTCCGTAGATACCACAGTATTGTACAGAAACATAAAGCAGTGATGTATTTGTTTCCTTCTTTTCTTTTCTATGTTTGGAGATACCACTATTGCTTGGCAACTGTGTTGATCATGGGATAGTTTTATTTATATTCAGTTTAATAActaatttctttatttttgtcCTCTTGCTCTTCTCTTTTTCTATATCTGTAAATACACTGTGACCTTAATGATGCCTTATGTAAGTGGCCTTGTCCAGATAAATAGATCACtcacggagggggggggggggggggggggggggggttaaatgcGGTAGTGTGTGATTGAATAGCTTTATTAAGGCTCCGATTCATATGGTTGCACCTTTTTCCCTTTGTCTAGAAATGATGGTTGGTCTGAAGACTCTTGAATAAAAGTTAAGCTTTATACTTA

Function

NR:

description
Krueppel-like factor 6

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K09207 KLF6_7; krueppel-like factor 6/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613163.2 False 2511 mRNA 0.48 5 60072133 60077499
XM_036985834.1 True 2468 mRNA 0.48 5 60072171 60077499

Neighbor

gene id symbol gene type direction distance location
LOC110530251 LOC106568834 coding upstream 243721 59825297 ~ 59828412 (+)
LOC110530249 LOC106568835 coding upstream 247069 59775730 ~ 59825064 (+)
LOC110530248 crem coding upstream 304040 59748668 ~ 59768093 (+)
LOC110530237 LOC106568845 coding upstream 860316 59188067 ~ 59211817 (+)
LOC110530235 LOC100136455 coding upstream 987279 59057416 ~ 59084854 (+)
LOC110530254 LOC106568831 coding downstream 78843 60156342 ~ 60168950 (+)
LOC110530256 LOC106568829 coding downstream 154812 60232311 ~ 60268663 (+)
LOC110530260 LOC106568826 coding downstream 243459 60320958 ~ 60346708 (+)
LOC110530261 LOC106568825 coding downstream 276439 60353938 ~ 60597494 (+)
LOC110530263 LOC106568823 coding downstream 557605 60635104 ~ 60677201 (+)
G729231 NA non-coding upstream 6544 60065273 ~ 60065589 (+)
G729168 NA non-coding upstream 104562 59967354 ~ 59967571 (+)
G729164 NA non-coding upstream 109202 59962688 ~ 59962931 (+)
G728662 NA non-coding upstream 193647 59878282 ~ 59878486 (+)
G728651 NA non-coding upstream 215339 59856575 ~ 59856794 (+)
G729247 NA non-coding downstream 13865 60091364 ~ 60091825 (+)
G729263 NA non-coding downstream 30200 60107699 ~ 60107900 (+)
G729265 NA non-coding downstream 32145 60109644 ~ 60109875 (+)
G729274 NA non-coding downstream 44691 60122190 ~ 60122743 (+)
G729278 NA non-coding downstream 49261 60126760 ~ 60126998 (+)
G728057 LOC100136012 other upstream 1090862 58980931 ~ 58981271 (+)
G727348 NA other upstream 1398128 58646859 ~ 58674005 (+)
G727161 NA other upstream 1713998 58357039 ~ 58358245 (+)
LOC118965533 NA other upstream 2218501 57850799 ~ 57854417 (+)
G730206 NA other downstream 963069 61040568 ~ 61042129 (+)
G730267 NA other downstream 1081311 61158810 ~ 61159193 (+)
G730377 NA other downstream 1292528 61370027 ~ 61810354 (+)
G730425 NA other downstream 1352364 61429863 ~ 61468746 (+)
G730447 NA other downstream 1389854 61467353 ~ 61468047 (+)

Expression


Co-expression Network