LOC110530256 (LOC106568829)


Basic Information

Item Value
gene id LOC110530256
gene name LOC106568829
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 60232311 ~ 60268663 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985836.1
TTCTCCTCTCCAGTCTAAATGATGTCACTTTCTAAAAAGGCTGTCAGCAAGAATGTAGGTGGCACCCAAACACAGTAGCAGGGAGATTCCCGCAGTAAAGCTCACACACTGTCACCAAGGCGCTTCAGTGAAATAGTCCTGCACTTTACTTGGATAGTCTCTGCTTGTCATTTCACCGGTTATCAACCAGGGGAAGGCATTCCAGGAAGACTGTAGGAGTCTCTTCGTGTGCCTCATGGCTGCGGTACTTGGAAACAGCACCCGAACTACGGGAACTTCAGATTGTGAGCTGAGAAGCCACttcagaaggagaaagaggaggaggtcgACAAGAAAAGAGAGAACCAGTATGCTGTCATCCTTCATCAGCCCTATGAAGATTAGAGATACTGGGACAACAACATCAACAGACGATGGAGACACTTCAAATAGCAGCAGCGCTGAGGTGAAGGAGAATCGTCATAGCACAAACCAAGTGGACTATTCCACCATACGACAACCTGCACATCATCAACCAGCTCTTTACACTGACATCTCCAGAGAGCTCTCCAGGACTACTGCTCTAAAGAGGAAGCAGCCATTGGTGGAAGGAAAAGACAGTCTTCTCTATGAACTCCAGTTGATCTGTAAGAGGACAGCCCATTGCTTTACATCAGATAGCGCCACGACTCCATCTGCACTGTCGGTTGAGGGAGGAGCATCACGCGGGAGTGACGCAACCTGTCGGAAGACAATGAGGACTTCCTGGTCTGTCACAAAGAAGAACGCCCTGGTGCAGTTGAACGAGCTGAGACCAGGTCTACAGTATGAGATAGCATCCTGGACAGGGCCAGTTCACGCCCCTGTGTTCGCTGTAGGAGTAGAGGTGAACGGTCTCAGGTTCGAGGGCCGAGGCCCCACCAAGAAGAAGGCTAAGATGAGAGCAGCAGAGATGGCTCTTAGGTCCTTCATCCAGTTCCCCAATGCCCCTCAGGCTCACATCACCATGGGAAACCTCAACTTTATCAACACCACAGCACCAACAGACTTCACCTCAGACCAGGCCGTTCTCATCCCTGATACGCTCTTCAAGGAGTTTGAGCCAGAGGCAAACGAAGACCAATTCCTTTACCACAGGACAGACGGAAAGGAGTTGCAATTTGAGGAGCCACCAGCGCAGGGAGAAACACAACTCCTATACCACAGCCACAGGACAGGGGGAAAGGGACAGGAGTTGCTCTCCAGCATTTGTAACCATGGGAGACTAGTATGCCTGACCCTTGACCTGAAGAGGCAGAGGATCGGTTCCTCCATTGTTGAGGAGCTGAGGCCTGTGGCTCTGCTCAATGAGTTAAGGCCAGGCCTGAGGTACGTCTGCTTGATGGAGAGAGTGCGGGGCAGGCCGATCAGGAGCTTTGTGATGGCAGTGAGGGTGGATGGGAGGATATTTGAGGGCTGTGGGTGCAGTAAGAGACTGGCTCAAGCCCAGGTAGCTACCTCAGCCCTACAGGACCTGTTTAACATCAGTCTGGGGCCTGAGACTAGCATCAGTCATACTGCCAGCTGGGCCAAGAGCTCTCAGCTACCTCAGTGCTTTGCAGAGTCAATCTTCCACTtggtgagagagaaacacagtcAGCTAGCTGACTGTTACTGCCCTACCTCCCACAGCCGTCACAAAGTACTGGCAGGCATCGTAATGACCAGAGGTTTTGACATTAGGCGAGGCCAGGTGGTGTCTCTGGGGACAGGGACCAAGTGTTTCAGTGGAGTGTGTGTCAGTGACCAGGGATGGACGGTTAATGACTGCCATGCTGAGGTCATCACAAGGAGGGCTTTCCTCCGCTTTCTCTACACCCAACTGGAGCTCTTTCTctgTAACCGGCCAGACAGTTTGGAGCAGTCCATCTTTGTGCGAGACAAAGAGTCTGGGTACAGACTGAGAGATGGTATTCTGTTCCATATGTATGTGAGCTCATCGCCCTGTGGGGACGCACGCCTCAATTGCCCCTACGAGGTAACAGCTACACACCACAGCTGGCACAGATTTGTAAGGAAGTTACGCTGCCATCTGAGGATGAAGATGGAAGGCGGTGAGGGTACACTACCTGTCAGCGTACGGAGAGCCAATCAGAAATGGGACAGGGGGTTGCCGAGGGAACCTCCGGTCACCATGTCCTGCACAGATAAAATGGCCAGGTGGAATGTTCTAGGTCTCCAGGGATCTCTCCTGTCTCACCTGGTGGAGCCAGTGTACCTCCACAGCCTCACTGTGGGCAGCCTGTGCCACACGGGTCACCTGGGAAGGACCATGGCACGACGCATGGGGCACATCAGCCCCACGTCCTCCTCCTATAGACACAACAGGCTACTCCTCGGCTGCCTCAGCAGCAGTGAGGGTCGGCAGCCAGGGAAGTCCCCCAGGTTCAGCGTGAACTGGAGTGCTGGAGATGGGGAGCTGGAGGTGCTGGATACCTCTACAGGCAGGAGGAAAGGCTCAGGGACACCATCCAGACTCTGCAAGAGATCCCTCTTCACTCGTTGGGAGAGACTACACCACCAGctgCGCAGGCCAGGACAAGTGTTGGGTGACGAGAAGGCCATAAAGACGTACTGTGGAGCTAAGATGACAGCGGGGGCCTACCAGAGAGCCAAGCAGAAGTTTGTCCTCTCACTGCAGGAGGCAGGCCTGGGCATCTGGAACAGGAAACCACCAGAACAGGAGCACTTCCAGAGCAACGTGTAAGGGGTTCTTATAGAAGAAGCaattccctcacacacacacactcacatgcgcTCTTCCTATCATGGTCACTAAGACCATAGAGGTCCTATAACACAATGTTACCATGATAGGGACAGCACATGTACAGGTAACccgccaaaataatggaaacatttgagtaaatgaaggatacaaagtatattgaaagccgAGTTAATTAAGCCGTTAATATTCTataatgcttagggtcatgtatagaaATGCTGGAGGAGGAAAGCATGGattatcaactagattcagccgtgggcGGAACAGGGGGGCGGAACATAATTACAGATCATTTCTaggcaaattgaccacaagatcAAACAGATCAtgtatctctctattatgcgagGGAATACTTAGAAACACATTTCCCAAATTAGAATCACTTTGGACTGATTTCCTGGTGCTTTTACAGTtttcttatgtccaacaatgaaaaacCCTAGAGGTCTTCTCGGGTCCAAAAATGTGGACATGGACACGAACGGACAGAtcataaattattttttttaaatgtaaaagggGACCCGAACCTGACAACAATCAGACCCAAGCATAAATGGACCCGACAACACCCAGACCTAGACCTGACCTGTACCCTAAAAGTTCCGGATCTAGACCAGACCCCTGATTGGACCAGagagatattttttttaatttgcaACTAAGTTGCTCTTCTGGTTAACAAATAGGCCTTTATATTTTGGCTAGGCCTTCTGTAAGTCAATAAACTCACATTATAAGTGTAAAATAAATATGCTATAGGCTATGCAGAGGCATTCGGGTCAACGCGGGTCTATCAGCTGTAGTACCTAGACCCAAACCCGATGACAATCAAACAGGACCCAAGGGAAAAGTTATAATTCTGGACCGCGGTCGGGTATCGGGTATTTGTTTTCGGGTACACCCATGAAGACCTGTACTATAACCCTATAGGATGACAAtgcacagggcacgagtggttaCTGAAttgtttgatgagcatgaaaacaatgtaaaccacatgccatggccatctcagtcaccagatctcaacccaattgaacaattatgggagattctggagcagcacCTGAGACAGCGTTTACCACCAGCAAATTATGGCATTTCTTGTGttggggtttcctttattttggcagtgtGAGGTGAGTGTGTGAGGGAATTTGGCTAGCTAAAGTTCCCTGGATTGCTTCTGTGCACTATTTGCTTATCTATAATGAATTTGTAGCCCTGCTTTCATTCCGCCTCCTCTGTGCAATCATATAACAATAGTAGCCCAAAGATGATCCCATTTCCCCTTTAGTAATCCGTCATCCACACCTGTTGAGTTACTCACTTGAGCTCCCCTTATTTTTGGTGTCTCCTTGCAATGCAAACGACATTTCCTTTCAACcattctgtcatgtattgtcttGTTCATTTTTTACATTGAATGTTATTAAATAGTTTTGAGAGAAAATTGTCATTGTAGTACTGGGGAGTCAGTAGACTATAGTATGTGACTGGCTATAGTATGTGAACCTGGCCATGAGAAACATGAAAGAGCAGGGACATCTAGTGGCTCAAAGAGTACATTTCAAGTTGACAGTAATTGacccatttttattttattttatctacATTACAATTGCACATATAGACATGCCATATGGCTAATTTAAATTAATTTATGTATTTCCTCTTTCTGCAAGCAACTTTATTGCTAGATATATATTTCTACACAAAAGACATCTCTGCACAACACCTCACAGACTGAAACGACAATGCAAATAGTAATGTCAAAGTATTTTGTATCAATATCATTGAATGTCAAATGTAAAATA

Function

NR:

description
double-stranded RNA-specific editase B2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985836.1 True 4575 mRNA 0.48 10 60232311 60268663

Neighbor

gene id symbol gene type direction distance location
LOC110530254 LOC106568831 coding upstream 63361 60156342 ~ 60168950 (+)
LOC110530253 LOC106568832 coding upstream 154812 60072133 ~ 60077499 (+)
LOC110530251 LOC106568834 coding upstream 403899 59825297 ~ 59828412 (+)
LOC110530249 LOC106568835 coding upstream 407247 59775730 ~ 59825064 (+)
LOC110530248 crem coding upstream 464218 59748668 ~ 59768093 (+)
LOC110530260 LOC106568826 coding downstream 52295 60320958 ~ 60346708 (+)
LOC110530261 LOC106568825 coding downstream 85275 60353938 ~ 60597494 (+)
LOC110530263 LOC106568823 coding downstream 366441 60635104 ~ 60677201 (+)
LOC110530264 LOC106568822 coding downstream 446243 60714906 ~ 60775318 (+)
LOC110530265 LOC106568821 coding downstream 517288 60785951 ~ 60934070 (+)
G729172 NA non-coding upstream 62236 60138737 ~ 60170075 (+)
G729278 NA non-coding upstream 105313 60126760 ~ 60126998 (+)
G729274 NA non-coding upstream 109568 60122190 ~ 60122743 (+)
G729265 NA non-coding upstream 122436 60109644 ~ 60109875 (+)
G729263 NA non-coding upstream 124411 60107699 ~ 60107900 (+)
G729359 NA non-coding downstream 103 60268766 ~ 60269047 (+)
G729360 LOC106562215 non-coding downstream 3278 60271941 ~ 60273016 (+)
G729436 NA non-coding downstream 174318 60442981 ~ 60445674 (+)
G729437 NA non-coding downstream 177731 60446394 ~ 60447750 (+)
G729534 NA non-coding downstream 395548 60664211 ~ 60664454 (+)
G728057 LOC100136012 other upstream 1251040 58980931 ~ 58981271 (+)
G727348 NA other upstream 1558306 58646859 ~ 58674005 (+)
G727161 NA other upstream 1874176 58357039 ~ 58358245 (+)
LOC118965533 NA other upstream 2378679 57850799 ~ 57854417 (+)
G730206 NA other downstream 771905 61040568 ~ 61042129 (+)
G730267 NA other downstream 890147 61158810 ~ 61159193 (+)
G730377 NA other downstream 1101364 61370027 ~ 61810354 (+)
G730425 NA other downstream 1161200 61429863 ~ 61468746 (+)
G730447 NA other downstream 1198690 61467353 ~ 61468047 (+)

Expression


Co-expression Network