XLOC_025851 (CABZ01044154.1)


Basic Information

Item Value
gene id XLOC_025851
gene name CABZ01044154.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 58961904 ~ 58967097 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050720
GCAATGAGGAAACGGGGTTGAACAAAACCCGCAGTGTGTTCATCAGTGGGCAAGATACTACTTGTTAGCTTCGGGGAAAGTGTCCTTTGTTTATGGTTGAAGGGTTGGAGTCATGAGGAGTGCAGAACGAGACTTTGCCCAACACTTTCTTCTTACACTCCGCTCATATACAGCAACTTCTCAAAGAAGACAAAAATGAAGAGCGGAATAAAGATGTTAGTCATGGCTTTTTTAATCTTTCTTCTGAATTCAGGCAACATCAAAGGTGAGATGGAGCTTCGTGCTTTTACAACCCAGAAAGCAAACTGCAACGAGAGGACGGTCTTACAGTGCAACATCAGCTCATCCGTGCCTCTGAACATTGATCAAATATACTGGATGAAACATGGAGAAAACGAGTTTAAATGCGACCCAAAATCCAGCAAGAGCCCTCCAGGATATGAGTGCAGCTACACGAGGGAAGCACTAACATTAACCATCCTGCATTCTACACCAGCGCAAATGGGGCAATATTATTGTTGTGTAATGGCAGACTCCTCACACGGATATAAGGGAATCAACGTGTCTGTAGagCATTGCACTGGAGACTTCTCCTACGAGATGCCTGGACCTCAGCAACTGCAGTGTCGCTTTACAGGTGTGTACCCGGAGGGCGCTATACACTGGTTTCAACATGACAGGAATTTGACCTCCATTGCTACACTGTCAATCCTGAATAACCCAGATGGAACCTTCAACATCACAAGTGTTATAGACCGTCAGGACGATCACGACAGATATAAGTGCTCATTGTGGTCATTAAAACAGGGTCGATACCTTGCAGATCAAGAGTTCAAAGTGCACGTTGATGCTGATTCCAGTCGTTTAAGCAAGAGCGCCACACAACACTGTTTCTCATGGACTCCTCTACTTCAAGGCCTCTTGTTTGTCTCTATAAGATCAATAAGTCAACTAAACTACTATTAA
>TCONS_00050719
GCAATGAGGAAACGGGGTTGAACAAAACCCGCAGTGTGTTCATCAGTGGGCAAGATACTACTTGTTAGCTTCGGGGAAAGTGTCCTTTGTTTATGGTTGAAGGGTTGGAGTCATGAGGAGTGCAGAACGAGACTTTGCCCAACACTTTCTTCTTACACTCCGCTCATATACAGCAACTTCTCAAAGAAGACAAAAATGAAGAGCGGAATAAAGATGTTAGTCATGGCTTTTTTAATCTTTCTTCTGAATTCAGGCAACATCAAAGagCATTGCACTGGAGACTTCTCCTACGAGATGCCTGGACCTCAGCAACTGCAGTGTCGCTTTACAGGTGTGTACCCGGAGGGCGCTATACACTGGTTTCAACATGACAGGAATTTGACCTCCATTGCTACACTGTCAATCCTGAATAACCCAGATGGAACCTTCAACATCACAAGTGTTATAGACCGTCAGGACGATCACGACAGATATAAGTGCTCATTGTGGTCATTAAAACAGGGTCGATACCTTGCAGATCAAGAGTTCAAAGTGCACGTTGATGCTGATTCCAGTCGTTTAAGCAAGAGCGCCACACAACACTGTTTCTCATGGACTCCTCTACTTCAAGGCCTCTTGTTTGTCTCTATAAGATCAATAAGTCAACTAAACTACTATTAA

Function

GO:

id name namespace
GO:0045202 synapse cellular_component
GO:0008021 synaptic vesicle cellular_component

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117537

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050720 False 966 lncRNA 0.44 3 58961904 58967097
TCONS_00050719 True 660 lncRNA 0.44 2 58961904 58967097

Neighbor

gene id symbol gene type direction distance location
XLOC_025850 NA coding upstream 104421 58835461 ~ 58857483 (+)
XLOC_025849 igl1c3 coding upstream 126727 58833306 ~ 58835177 (+)
XLOC_025848 NA coding upstream 150071 58806215 ~ 58811833 (+)
XLOC_025847 NA coding upstream 246698 58712700 ~ 58715206 (+)
XLOC_025846 NA coding upstream 249534 58711054 ~ 58712370 (+)
XLOC_025852 CABZ01044156.1 coding downstream 17366 58984463 ~ 58989816 (+)
XLOC_025853 NA coding downstream 57837 59024934 ~ 59027837 (+)
XLOC_025854 rasd4 coding downstream 84406 59051503 ~ 59052994 (+)
XLOC_025855 MGAT5B coding downstream 150039 59117136 ~ 59167824 (+)
XLOC_025856 NA coding downstream 245063 59212160 ~ 59224196 (+)
XLOC_025429 BX649540.1 misc upstream 28712868 30248739 ~ 30249036 (+)
XLOC_025845 CU570691.1 non-coding upstream 251149 58702320 ~ 58710755 (+)
XLOC_025865 NA non-coding downstream 1070453 60037550 ~ 60043897 (+)
XLOC_025868 NA non-coding downstream 1099291 60066388 ~ 60067768 (+)
XLOC_025870 NA non-coding downstream 1389117 60356214 ~ 60357972 (+)

Expression


Co-expression Network