LOC110530950 (LOC105018391)


Basic Information

Item Value
gene id LOC110530950
gene name LOC105018391
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 61100767 ~ 61117911 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110530950
ATGGTCAGTATCCCCCAGCTAACTGACAATGGCTACATCCTGATTCTCTACCGTTCTCCCGAGGGCTGTCACTCTGTATTCCCCCTCAGTCCCCCTCCTGGAGACAACAATGCTGATTCCAGTGCTCTACCACCGGTCAAGTCCAAGGATACCGTCATAGAAGCAGACAAGTACTTCCTGCCATTTGAGTTAGCCTGCCAGTCCAAATGTCCTCGCATCGTCATCACATCTCTAGATTGTTTACAGAAACTCATTGCTTATGGTCACCTCACTGGAAACGCTCCAGACAACACTACACCTGGAAAGAGGTTAATCGATAGAATCATCGAGACCATATGTGGCTGCTTTCAAGGGCCTCAGACAGACGAAGGTGTTCAGCTGCAGATTATAAAGGCTCTGCTGACAGTGGTGACTTCTCAGCACAACGAGATCCACGAGGGAACGGTGCTGCAGGCAGTCAGGACCTGCTTCAACATCTACCTGGCCAGCAAGAACCTCATCAACCAGACCACGGCCAAGGCCATGCTCACACAGATGCTAATTGTTATCTTTGCTCGCATGGAGAACCAAGCATTCCAGGAGGCCAGACAGATCGAGAAGGAGCGTCTGAGACAGCAGCATCTGCAGCAGTCACCAAGCAGCCAACAGAGGCAGGAGCTTCCTTCATCCCCCCACCAGCACCAAGGCCCCGCACTTCACTTCACCCCCCCCCGACCAGAAACCTCATGCCTCCCCCCAACAGAACCAGGAGCCCCACACAGCCTCACCTCAGCCCTCTGCGTGGTGACCTCCCGGGTGCCTGATCAAAATGCCCAAGATGACCCGGAGCCAGAAAATGTCTCTGTGTTCTGCAGTGCTGAAAACGAGCTGACTGAGGCAGACCTGGCTACTGCAGCTGCTGCACAGGGTTTGTTCCAGCAAGATGCTGAAGGGCTTGTAGAGGAAGAACCAGTCAACTATGAGGAGCAAGCTCAAGAGGTGGTCCAGACCATGCTGCAGGAAGTTGTCAATAAAGTTGTTGGAGaatgTAGGGAGAGTGTGTGCAGCGCTACAGAGTGTGTAGACGATGTGCCAGTCCCggtggtgggggaggaggagggcgaGCTGGGCAGCGACACAGAGAACGTCCATGCCGACGGTATCCCTGGCACGCCCATATATGCTGCCTTCACTCCCTCACTGGCGGACGACaggctctctgtctcctccaacGACACTCAGGAATCTGGAGCTACGAGTGGTTCCTCCCCTGTTGCTAAGTTCTCCCATATCCTCCAGAAGGACGCCTTCTTAGTGTTTCGCTCCCTCTGCAAACTCTCCATGAAGCCTCTGTCTGATGGACCCTCTGATCCTAAGAAACGTTGTCTCTGTCAATCACACGAGCTACGCTCCAAGGTGCTGTCCATCCAGCTGCTGCTGTCCATCCTGCAGAACGCTGGGCCCGTCTTCAAGACCAAAGAGATGTTGCGTCGACGCCATCAAGCAGTACCTGTGTGTGGCGCTGTCTAAGAACGGCGCCTCCTCAGTCCCCGAGGTCTTCTCGCTCTCCAtcttcctcaccctcctctcccacttcAATATATGTATGTCAGCTACGACTGTGACCTGAACGCTGCTAATATATTTGAGAGGCTGGTCAATTACCTGTCTAAGATGGCACAGGGCAGAGTGGGGCATGAGCTTGGCACCACACCTGCTCAGGAGCTGAGCTTGAGGAAAAGGGGTCTGGAGTGTCTAGTGTCTATCCTCAAGTGTATGGTGGAGTGGAGCAATGATCAGTCTGTGAACCCCAACTCTCAGACCAGTCTAGGTCAGGAGAAGCCCGTGGAGCAGGAGCCCAGTGAGAGCACCATGCCCCCAGAGAGTATCAACCAATAAACTCCCTGGACTCCAATGCCTCCTCGGGCATCGGCTCCTACAGCACCCTCATGTCAGGAACGGACAACGCAGAGCCATCGAGGTGCTCAAGTGGCAGAAGGAGATCATCGAGCAAGGCATTCACTTGTTCAACAAGAAGCCAAAGAGGGGCATCCAGTATCTACAGGAGCAAGGCATGCTGGAGGACCTAGCTCAGTTTCTGCATCAGGAGGAGAGGCTAGATTCTACTCAGGTGGGGAAGTTCATTAATAAAGAGGTGATGTACGCCTACGTTGACCAGATGGATTTCCAAGGCAAGGACTTTGTCTCGGCTCTGCGTCTGTTCCTGGAGGGCTTCCGTCTGCCCGGAGAGGCCCAGGAGATCGATCGACTAATGGAGAAATTTGTGGCCAGATATTTAGAATGTAACCAAGGTAGATGTCATGACATTGGACTTGTTTCTCTAATCCTTCAGGCAAACTGCAGATACGTCCTGGCTTATTCAATCATTATGTTGACAACAGACCTTCACAGTCCACAAgtGAAGAATAAAATGACGAAAGAGCAATACATCAAGATGAATCGAGGAATCAACGACAGCAAAGATTTCCCTGAGGAGTAGCTGTCAGGCATTTACAACGAAATCGCAGGAAGAAAATAGCCATGAACGACGCAAAGAAAATCACCCACAAATCCAGCAAACAAAGCAAagCATGCTcactgagtgtctgtctgtttcGAGCCCTCCCCCGTAGAGATGGAGCAGATCGTAAGACAGCCAAGGCCCTGATGAAGGCAGTCAGCCACGTCCAGGCTCCCTTCACCAGCGCCACGCGCCTAAACCACGTCAGACCTATGTTCAAGTTGGCATAGACCCCGTTCTTAGCAGCGTTCAGCGTGGGTCTTCAGGACTGTGGTGACACTGAGGTAGCCTCTCTGTGTCTGGAGGGGATCCGCTGTGCCGTCAGGATAGCCTGCATCTTCACCATCCAACTGGAGCGTGATGCGTACGTCCAGGCCCTGGCACGGTTCACCCTGCTCACAGCCAGCTGTGGTATCTCTGAGATGAAGCAGAAGAACATCGACACCATCAAGACCCTCATCACTGTCGCCCACACTGACGGAAACTACCTGGGCAACTCCTGGCATGAGATCTTGAAGTGTATCAGTCAGTTGGAGCTGGCCCAGCTGATCGGGACGGGGGTGTAGGCCCGTTACATCTCAGGACGGTCCCGGCCAAAGGGGGCCTCCTGGCCAGCCTGAGAGAGCAGGCCTCAGACAGCTCAGAGTACATGGGACTGGTTGGAGGTAATGTGGACCGTAAACAGATAGCCAGTATTCAGGAGTCCATTGGAGAGACAAGCTCCCAGAGTGTCGTCGTTGCTGTTGACAGGATATTTACTGGGTCTACCAGACTGGATGGCAATGCAATAGGTTGGTATTAtttaagtataactctggtGCAGCTGGAGCTGATCCAGACCATAGACAACGTGGTCTTCTACCCCGCCAGCAGCAGGAAGGAGGATGCAGAGAACCTGGCTGCTGCACAGAGAGACCCAGTAGATGCAGACGTCTTGTTGAAGGCCCAGGACAAGGGAATGTACCGCTATCTGACCTCAGATCAGCTCTTCAAACTGCTGGACTGTCTGCTAGAGTCCCACCGCTTTGCCAAGGCCTTCAACTCCAACAACGAGCAGAGGACTGTCCTGTGGAAGGCAGgTTTCAAGGGGAAGTCCAAACCAAACCTGTTGAAGCAGGAGACTAAGTCTGGCCTGTGGCCTCCGCATCCTGTTCCGCATGTACACAGATGACAGCTGCAAGGCAGCCTGGGAACAGGTGCAGAGGCGACTGCTCAATGGGTGTAGTGAGGCCCTGGGCTACTTCCTCACGCTGACATCAGAGAGCCACCGGGAAGCCTGGACCAATCTCTTCCTCACCAAGTTCAAGGCCCATGCATCCAGATACTACCCACTCCTCTGTGAGATCATGCAGTTTGACCTGATCCCAGAACTCTGGGCCGTGCTGCGTAAGTTCTTTCAACGCCTTCGACATCTCACTACTGCCCAGTCCCAGAGCGGAGCTAGGGCTTGCTGGAAGCTAGTGACATCATCACTAGTGGACCAGCACAGGATACAAGCTCCAAAGACAGTCCCTCTCTGGGGTGGGAGAGGGAAAGTTTtgcatcccgaatggcaccctatttcctatatagtgcactatacaggggatatggtgccatttggaacacagatgATGTATAACCCTCTGAACTCTGCCCCTCTGAGGGCCGCAAGGGATTCTTAAAGCGGACTGGTTAGCTGAAAGTGACAGGGCCCGCAGAAAGGTACTGGAAGCTCCTCCATGCTGCACACAGTGATGTGCCGGCCAGAGATAGTGTAGTGAGTGGGGCCCACAAAAGCACTGAATGAGTGGCTGCAGTATGGCATAGAAATATCATACTAATGATCAGAATAACAATGCAATTATTTTACTAATTTCTTTCCGTCTGACCAACATTATGGAGGGTGTGCTTTTTGCTATCTCTTGGAATTATTTTATGAAACTGAGGAGTGAAAAGGATGAGTAacgattatttatttttttactgtaaCATTGAAATTAAAACAATTTGAATTTGCTAAATAATTTCAGCTGCACTGTCACTACACGTATGGTCATTTTCAAAAAGCTTCGGTTATGAGAATCGAGCAcatgaggttggtggcacctttaaTTAAAGagaacaggcttgtggtaatggggcggtagggtagcctagtggtt
>TU829366
cctatttcctatatagtgcactatacaggggatatggtgccatttggaacacagatgATGTATAACCCTCTGAACTCTGCCCCTCTGAGGGCCGCAAGGGATTCTTAAAGCGGACTGGTTAGCTGAAAGTGACAGGGCCCGCAGAAAGGTACTGGAAGCTCCTCCATGCTGCACACAGTGATGTGCCGGCCAGAGATAGTGTAGTGAGTGGGGCCCACAAAAGCACTGAATGAGTGGCTGCAGTATGGCATAGAAATATCATACTAATGATCAGAATAACAATGCAATTATTTTACTAATTTCTTTCCGTCTGACCAACATTATGGAGGGTGTGCTTTTTGCTATCTCTTGGAATT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110530950 False 4644 mRNA 0.46 26 61100767 61117911
TU829366 True 356 lncRNA 0.46 1 61117324 61117679

Neighbor

gene id symbol gene type direction distance location
LOC110530270 LOC106569033 coding upstream 11103 61054258 ~ 61089664 (+)
LOC110530268 LOC106568819 coding upstream 53478 60971600 ~ 61047289 (+)
lactb2 lactb2 coding upstream 131313 60961716 ~ 60969454 (+)
LOC110530265 LOC106568821 coding upstream 166697 60785951 ~ 60934070 (+)
LOC110530264 LOC106568822 coding upstream 325449 60714906 ~ 60775318 (+)
LOC110530272 vcpip1 coding downstream 27831 61145742 ~ 61152933 (+)
LOC110530951 LOC106569038 coding downstream 43572 61161483 ~ 61184967 (+)
LOC110530277 LOC106569042 coding downstream 102380 61220291 ~ 61221651 (+)
LOC110530278 pde7a coding downstream 127331 61245242 ~ 61296169 (+)
LOC110530279 armc1 coding downstream 179777 61297688 ~ 61305678 (+)
G730208 NA non-coding upstream 48017 61052538 ~ 61052750 (+)
G730188 NA non-coding upstream 49404 61048867 ~ 61051363 (+)
G730190 NA non-coding upstream 52245 61047539 ~ 61048522 (+)
G730167 NA non-coding upstream 204141 60894105 ~ 60896626 (+)
G730168 NA non-coding upstream 206867 60892551 ~ 60893900 (+)
G730250 NA non-coding downstream 8616 61126527 ~ 61127752 (+)
G730262 NA non-coding downstream 22652 61140563 ~ 61141462 (+)
G730264 NA non-coding downstream 41482 61159393 ~ 61160880 (+)
G730278 NA non-coding downstream 54707 61172618 ~ 61172840 (+)
G730279 NA non-coding downstream 55477 61173388 ~ 61173701 (+)
G730206 NA other upstream 58638 61040568 ~ 61042129 (+)
LOC110530248 crem other upstream 1334409 59748668 ~ 59768093 (+)
G728057 LOC100136012 other upstream 2119496 58980931 ~ 58981271 (+)
G727348 NA other upstream 2426762 58646859 ~ 58674005 (+)
G727161 NA other upstream 2742632 58357039 ~ 58358245 (+)
G730267 NA other downstream 40899 61158810 ~ 61159193 (+)
G730377 NA other downstream 252116 61370027 ~ 61810354 (+)
G730425 NA other downstream 311952 61429863 ~ 61468746 (+)
G730447 NA other downstream 349442 61467353 ~ 61468047 (+)
G730468 NA other downstream 369665 61487576 ~ 61488104 (+)
G730125 NA non-coding upstream 205557 60855664 ~ 60911767 (+)

Expression


Co-expression Network