LOC110530277 (LOC106569042)


Basic Information

Item Value
gene id LOC110530277
gene name LOC106569042
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 61220291 ~ 61221651 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613200.2
GATGATGGTCTCAGGTCTATTATATATAAGTCTTGTTTCGATGCTGTTTTGAAAACGCACTGTTGCAGGTTCATTGGAAGGCACAATTATTGTAGAAGAGATATCCTTTTCATAGCAACTTCACAGAAACATCTTCTGTCACAGTTAAACTCAGATTCCTCCCAATCTCCTGAGATGAAGGTGAATGTCTTCGTTTTCGCCGTGGCTCTACTTGGTGCCTTCCAACCTCGCTATGAATGTAGAGCTATTGAAACCCCCTGGGCGGTCCATCCATCCCACAATCTACAGGCAGAGCTGCAACAGCAACTCCCTATTCTTCTGCGACTAGGAGAGGAGTACTTAATTCGGCTAGACAACTCCAATCAAAATTCGCTCCAGTCCTCCTCGCCGAACACATCTCCTGGAGCTGCTGCGCCCTCAACAACGGTCAACAGGGCATTACAACTTCAGCTCACGCAGCGCCTGCTGCAAGGTAAAGTCGGTGACATAAATCGGTTTCTAAACAGCTACGCTAACCAGATGGGTGATTCCATGGAAAGAGGAAAGAGGTCCGGTCCGGGCGAAGAGCCACCGATCTCTTTGGACCTGACGTTCCACCTGCTGAGGGAAGTTCTAGAAATGGCTCGAGCCGAGCAATTAGCACAGCAGGCAAATAGTAACCGAAAAATGATGGACATATTCGGGAAATGAAAGTGTTAGAAACACATTTGCCAAATAATTTGTTTACATCTTGCACAAAGTGTACGGTACTATTCCATTTCTGTATTAGTCTTTAATTGGTTaactttctttattttatttatcatttgtatttatttaaacgAGAGCTGTAAAATCGAGTTGTAATTCGCTGTATAGTTATTACATTGTTTGATGAGATGCAAACATAGCCCGTTGACATGCTGACACTGAACAAATATCCTTTGTCTTAATTTATATTCAAGCATAACATGTTTT

Function

NR:

description
PREDICTED: corticoliberin-1-like isoform X1

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG:

id description
K05256 CRH; corticotropin-releasing hormone

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613200.2 True 957 mRNA 0.43 2 61220291 61221651

Neighbor

gene id symbol gene type direction distance location
LOC110530951 LOC106569038 coding upstream 35324 61161483 ~ 61184967 (+)
LOC110530272 vcpip1 coding upstream 67358 61145742 ~ 61152933 (+)
LOC110530950 LOC105018391 coding upstream 102380 61100767 ~ 61117911 (+)
LOC110530270 LOC106569033 coding upstream 130627 61054258 ~ 61089664 (+)
LOC110530268 LOC106568819 coding upstream 173002 60971600 ~ 61047289 (+)
LOC110530278 pde7a coding downstream 23591 61245242 ~ 61296169 (+)
LOC110530279 armc1 coding downstream 76037 61297688 ~ 61305678 (+)
LOC110530280 LOC106569045 coding downstream 105497 61327148 ~ 61339612 (+)
LOC118965539 NA coding downstream 122145 61343405 ~ 61348640 (+)
LOC110530952 LOC106569062 coding downstream 148934 61370585 ~ 61375464 (+)
G730279 NA non-coding upstream 46590 61173388 ~ 61173701 (+)
G730278 NA non-coding upstream 47451 61172618 ~ 61172840 (+)
G730264 NA non-coding upstream 59411 61159393 ~ 61160880 (+)
G730262 NA non-coding upstream 78829 61140563 ~ 61141462 (+)
G730250 NA non-coding upstream 92539 61126527 ~ 61127752 (+)
G730334 NA non-coding downstream 31555 61253206 ~ 61262867 (+)
G730343 NA non-coding downstream 56688 61278339 ~ 61278589 (+)
G730355 NA non-coding downstream 92687 61314338 ~ 61314555 (+)
G730360 NA non-coding downstream 101196 61322847 ~ 61323094 (+)
G730267 NA other upstream 61098 61158810 ~ 61159193 (+)
G730206 NA other upstream 178162 61040568 ~ 61042129 (+)
LOC110530248 crem other upstream 1453933 59748668 ~ 59768093 (+)
G728057 LOC100136012 other upstream 2239020 58980931 ~ 58981271 (+)
G727348 NA other upstream 2546286 58646859 ~ 58674005 (+)
G730377 NA other downstream 148376 61370027 ~ 61810354 (+)
G730425 NA other downstream 208212 61429863 ~ 61468746 (+)
G730447 NA other downstream 245702 61467353 ~ 61468047 (+)
G730468 NA other downstream 265925 61487576 ~ 61488104 (+)
G730469 NA other downstream 266506 61488157 ~ 61515470 (+)

Expression


Co-expression Network