XLOC_025853


Basic Information

Item Value
gene id XLOC_025853
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 59024934 ~ 59027837 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052391
CTACTTACATTTTATTGAAGGTACACATTTTAACATTTGCTTTTCCCACCTTAGAATCGAACCCACCTTGCTCTACTAGTTGAACCACAGGGAGCTACAGCAATTCAAGATGTATCGATTCATGACAATAACCAAAGGTTCCATTGTCTGTGACCCTTCATTTGACCCTGCATTTCCAGCATGAGAATCGAACCCACCTTGCTCTACTAGTTGAACCACAGGGAGCTACAGCAATTCAAGATGTATCGATTCATGACAATAACCAAAGGTTCCATCGTCTGTGACCCTTCATTTGACC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052391 True 298 lncRNA 0.42 2 59024934 59027837

Neighbor

gene id symbol gene type direction distance location
XLOC_025852 CABZ01044156.1 coding upstream 35118 58984463 ~ 58989816 (+)
XLOC_025851 CABZ01044154.1 coding upstream 57837 58961904 ~ 58967097 (+)
XLOC_025850 NA coding upstream 167451 58835461 ~ 58857483 (+)
XLOC_025849 igl1c3 coding upstream 189757 58833306 ~ 58835177 (+)
XLOC_025848 NA coding upstream 213101 58806215 ~ 58811833 (+)
XLOC_025854 rasd4 coding downstream 23666 59051503 ~ 59052994 (+)
XLOC_025855 MGAT5B coding downstream 89299 59117136 ~ 59167824 (+)
XLOC_025856 NA coding downstream 184323 59212160 ~ 59224196 (+)
XLOC_025857 sec14l1 coding downstream 384119 59411956 ~ 60282382 (+)
XLOC_025858 pecam1 coding downstream 756795 59784632 ~ 59822428 (+)
XLOC_025429 BX649540.1 misc upstream 28775898 30248739 ~ 30249036 (+)
XLOC_025847 NA non-coding upstream 309728 58712700 ~ 58715206 (+)
XLOC_025846 NA non-coding upstream 312564 58711054 ~ 58712370 (+)
XLOC_025865 NA non-coding downstream 1009713 60037550 ~ 60043897 (+)
XLOC_025868 NA non-coding downstream 1038551 60066388 ~ 60067768 (+)
XLOC_025870 NA non-coding downstream 1328377 60356214 ~ 60357972 (+)
XLOC_025871 NA non-coding downstream 1355285 60383122 ~ 60401867 (+)

Expression


Co-expression Network