LOC118965539


Basic Information

Item Value
gene id LOC118965539
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 61343405 ~ 61348640 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052928.1
ggccaattgtgcgccgccctacgggactcctgatcacggccggttgtgacacagcctgtgGGAGGAGCTaagatgagaggtggagagatgattCTCCTCTATCTGACTGGAACAGTGGGATGTCTTCAGTTCTGCCTCCTGATAACACACTGTTACACCCATCACCATGTTTCTCTACCCAGTGTTTCTCCTCTCTGCACTTGTTGGTGGCAGTTATGAAAATAACTTAAAACCAACTTCAGAGACAGAACATGGCATGGAGGTAAGCAGTGTTACATTGTCTTGCAACTACTCTGGATCAGTAGACTCTTCAAGGGTATCGTCAATATCCCAGATCAGCACCGCAATTCATCCTTTAAACTACAGTCTCAGCAAAGCCCTCTGTATTTAGAGCTGAACCTGATGACCCTCGACTGTCTGTTCATCTGAATAAAGAGAGAACCAGCGTGGATCTGGAGATCTCCTCTGCTGAAGTGACAGACTCTGCTCTGTACTACTGTGCTCTGAGGCCCACAGTGACAGGAAACCTCTCTA
>TU829512
GCTAGTATGAGAATGAAAATGAGACTCTCAAAATGGCATGAAGGTCTTTCCTCAGTGCATGGTAAgcttgttatatatatatatagtttttgTATTTTACCTCTTTTTGCTCCACAATTTCAATCTTGTCTCTTCGCTGCAGCTCCCCAACTGGCTCGGGAGGCGacggtcgagtcatgcgtcctccgaaacatgacccaccaaaccgtgcttcttaacacccgcccgcttaacccagaagccagctgcaccaatgtgtctgaggaaacactgttcaactgatgcccgaagtcagcctgcaggcgtcCGGCCCTCcaaaaggagtcactagagcgcgatgagccaagtaaagcccccctggacaaaccctcccctaacccggacgacgctgggccaattgtgcgccgccctacgggactcctgatcacggccggttgtgacacagcctgtgGGAGGAGCTaagatgagaggtggagagatgattCTCCTCTATCTGACTGGAACAGTGGGATGTCTTCAGTTCTGCCTCCTGATAACACACTGTTACACCCATCACCATGTTTCTCTACCCAGTGTTTCTCCTCTCTGCACTTGTTGGTGGCAGTTATGAAAATAACTTAAAACCAACTTCAGAGACAGAACATGGCATGGAGtctgctgttcccaca

Function

NR:

description
PREDICTED: UDP-N-acetylglucosamine transporter-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052928.1 False 534 mRNA 0.48 3 61343796 61344885
TU829512 True 668 lncRNA 0.51 4 61343405 61348640

Neighbor

gene id symbol gene type direction distance location
LOC110530280 LOC106569045 coding upstream 4184 61327148 ~ 61339612 (+)
LOC110530279 armc1 coding upstream 38118 61297688 ~ 61305678 (+)
LOC110530278 pde7a coding upstream 47627 61245242 ~ 61296169 (+)
LOC110530277 LOC106569042 coding upstream 122145 61220291 ~ 61221651 (+)
LOC110530951 LOC106569038 coding upstream 158829 61161483 ~ 61184967 (+)
LOC110530952 LOC106569062 coding downstream 25700 61370585 ~ 61375464 (+)
LOC110530301 LOC106569066 coding downstream 689730 62034615 ~ 62046177 (+)
LOC110530305 klhl20 coding downstream 943685 62288570 ~ 62299158 (+)
LOC110530308 LOC100380755 coding downstream 1276360 62621245 ~ 62881609 (+)
LOC110530310 LOC106569074 coding downstream 1626674 62971559 ~ 63003590 (+)
G730360 NA non-coding upstream 20702 61322847 ~ 61323094 (+)
G730355 NA non-coding upstream 29241 61314338 ~ 61314555 (+)
G730343 NA non-coding upstream 65207 61278339 ~ 61278589 (+)
G730334 NA non-coding upstream 80929 61253206 ~ 61262867 (+)
G730279 NA non-coding upstream 170095 61173388 ~ 61173701 (+)
G730401 NA non-coding downstream 243482 61588367 ~ 61593191 (+)
G730547 NA non-coding downstream 280845 61625730 ~ 61626228 (+)
G730377 NA non-coding downstream 465030 61370027 ~ 61810354 (+)
G730694 LOC106569104 non-coding downstream 526071 61867561 ~ 61874667 (+)
G730713 NA non-coding downstream 550824 61895709 ~ 61899251 (+)
G730267 NA other upstream 184603 61158810 ~ 61159193 (+)
G730206 NA other upstream 301667 61040568 ~ 61042129 (+)
LOC110530248 crem other upstream 1577438 59748668 ~ 59768093 (+)
G728057 LOC100136012 other upstream 2362525 58980931 ~ 58981271 (+)
G727348 NA other upstream 2669791 58646859 ~ 58674005 (+)
G730425 NA other downstream 84978 61429863 ~ 61468746 (+)
G730447 NA other downstream 122468 61467353 ~ 61468047 (+)
G730468 NA other downstream 142691 61487576 ~ 61488104 (+)
G730469 NA other downstream 143272 61488157 ~ 61515470 (+)

Expression


Co-expression Network