XLOC_025854 (rasd4)


Basic Information

Item Value
gene id XLOC_025854
gene name rasd4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 59051503 ~ 59052994 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050722
CTCCAGCACAGCACACAGAGGCAGAACGTCAAGGAACCATGTCTCTGGAAGTCAAGGAGAAGACCGAGGTGCGTCTGGTGTTCATGGGAGCTGCAGGTGTGGGTAAAACCGCATTGATAAAGCGCTTTCTTCAAGACAGCTTCGAGCCCAAGCACCGGCGCACAGTTGAGGAGCTCCACAGCAAAGAATATGAAGTAGCTGGAGTCAAAGTGACCATCAACATCATGGACACCAGCGGGAGCTACTCGTTTCCAGCAATGAGGAAGCTCTCCATCCAAAACGGAGACGCTTTCGCTTTGGTCTACTCCGTAGATGATCCTGAATCTCTAGAAGTGGTGAACAGGCTCCGCGAGGAAATCCTGGAGGTCAAGGAGGACAAGTTCACGCCAATCGTAGTTGTAGGCAATAAGAAAGATCGGCTGATCGAGCGCCGGGTGTCTGCGGACGATGTTCTGGCGAAGGTGGAGATGGACTGGAACAATTGTTTCATGGAGGCTTCGGCTAAAGAAAACGAGAACGTGATGGAGGTGTTCAAGGAGCTTCTCCAGCAGGCGAATCTCCCCAGTCGATTGAGCCCAGCGTTACGGCGGCGCAGAGAAACCTTTCCTAAAGACTTGAGTCTACGGCCACCCATGAACAAAACTAACAGCTGCTCCGTCTCATAAAGAAAAAGACTAGATGGTTGAGTTTCTGCTCAATGCAGTGCAAGAGCGCTGATGTGGACGGATCCTTGAAGGCACATATAGAGACACTTCCCATAATTCTGCTCTACAACCAGCACtaaaaagaagaggaagaagggAAAGAAGAGGGAAATAAGACTACAAGGTTGAGATTCCACTCTCTGCAAAAAGATCCTTGAAGGGACGTAAAGATGCTTTTGTTACATAGTGAAAGCAAGCATGAAGGACAATTGATGAAGgggaaatgaacaaaataaaaatgtaaactgttgAATGTTTTAATGGAGGTGTTTTGATCCTGAAGATGATCAGTCTTGTGTGATTTGTGTAAAGAGATAACGCTACTACTAGATCATGATATTTTTAATGGGATTGCAGTTTTGTTAACATAATTCAAAATGATGCTGTATGTGACATTCGTTGGTTTACTAATTGTTGCAAGTATTAAGGTCACCGTGTCAATTGTTCAGTTGCATACTGTTGAAATGTGTGCACTTGCACTTTTACTCATCTGTCGGAAACTCATCTGATGCACtgatttctttctttgttttgcaaaattgctttttttgtatttttactttgatgcaacttgtaaaatatgtttaatttttttattattaagcaaAATGACTTTTGCCAAatgatttttagttttttttttttttttttgtacttttggtCAACACAActtgtaaaaataaacatttcgtGCCAGCAAATATGTTGagaatttttttgtatgttttaattgacattttttgttattttcattttttgatgcaacatattaaataaataaaatattt

Function

symbol description
rasd4 Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Acts upstream of or within fin regeneration. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in diencephalon; hindbrain; midbrain; and neurons.

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0019003 GDP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050506-133 Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Acts upstream of or within fin regeneration. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in diencephalon; hindbrain; midbrain; and neurons.

Ensembl:

ensembl_id ENSDARG00000099238

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050722 True 1492 mRNA 0.41 1 59051503 59052994

Neighbor

gene id symbol gene type direction distance location
XLOC_025853 NA coding upstream 23666 59024934 ~ 59027837 (+)
XLOC_025852 CABZ01044156.1 coding upstream 61687 58984463 ~ 58989816 (+)
XLOC_025851 CABZ01044154.1 coding upstream 84406 58961904 ~ 58967097 (+)
XLOC_025850 NA coding upstream 194020 58835461 ~ 58857483 (+)
XLOC_025849 igl1c3 coding upstream 216326 58833306 ~ 58835177 (+)
XLOC_025855 MGAT5B coding downstream 64142 59117136 ~ 59167824 (+)
XLOC_025856 NA coding downstream 159166 59212160 ~ 59224196 (+)
XLOC_025857 sec14l1 coding downstream 358962 59411956 ~ 60282382 (+)
XLOC_025858 pecam1 coding downstream 731638 59784632 ~ 59822428 (+)
XLOC_025859 CU693479.1 coding downstream 798543 59851537 ~ 59862797 (+)
XLOC_025429 BX649540.1 misc upstream 28802467 30248739 ~ 30249036 (+)
XLOC_025848 NA non-coding upstream 239670 58806215 ~ 58811833 (+)
XLOC_025847 NA non-coding upstream 336297 58712700 ~ 58715206 (+)
XLOC_025865 NA non-coding downstream 984556 60037550 ~ 60043897 (+)
XLOC_025868 NA non-coding downstream 1013394 60066388 ~ 60067768 (+)
XLOC_025870 NA non-coding downstream 1303220 60356214 ~ 60357972 (+)
XLOC_025871 NA non-coding downstream 1330128 60383122 ~ 60401867 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000112_01753138_01753764 NA coding CI01000112 null 1752956 ~ 1754407 (+)
bowfin (Amia calva) AMCG00013343 LOC103354899,LOC102794595,LOC101480902 coding CM030125.1 CM030125.1 28969528 ~ 28970154 (+)