XLOC_025855 (MGAT5B)


Basic Information

Item Value
gene id XLOC_025855
gene name MGAT5B
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 59117136 ~ 59167824 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050723
CCGCTCAAATATCTGTTTTGCATAACAGTTGGCAGGAATCCTACTGTTTAAATGAAAAATCTGAAAGTCTGAACTATTCCAGCAATGTTGAGGAGAGCCTTCACATTTTCACCTGAACCCCTCTCCACGTTTTCCAGTTTGTCAAAGCTTGTTGTTTTTCTTCGCAGCTCACTCGGCGTGCCTCCAGGAAGAGGGAGCTGTCCTCTGATTGGCCCGCTGCCTTTTGACCTCATCTATACGGACTACCACGGCCTGCAGCAGATGAAGCAGCACATGGGCCTTTCCTTCAGACAGCACAGgtgccACATCCGTGTGATCGACACCTTCGGCACAGAGCCAGCGTACAATAATGAGGAATATGCCACTCTGCACGGCTACAGGACCAACTGGGGCTACTGGAACCTCAACTGCAAACAGTACATGACCATGTTCCCACACACTCCTGACAACTCCTTCATGGGTTTTGTGACCGAGGAACTAAACCAGACTGAACGATTCAACATAAAGAGAAACAAAGTCAACAACATGGCTGTGGTTTACGGCAAAGAGGCCAGCATGTGGAAGGGAAAGGAGAAATTGCTTTCCATCCTGCACCGCTACATGGACATCCATGGGACAGTGTACTATGAGGCCCAGCGGCCCCCAGAGGTGCCCGCATTTGTCAGGAACCACGGCCTGCTGCCCCAGGATGAGCTGCAGCAGCTTTTGAGAAAGGCCAAGCTTTTTATGGGATTTGGCTTCCCCTACGAAGGCCCCGCCCCTTTAGAGGCCATAGCCAATGGCTGCATATTCCTGCAGCCGAAGTTCAGCCCCCCTCGCAGCTCCCTCAACCATGAATTCTTCAGAGGGAAACCCACTTCCAGAGAGGTGTCGTCACAGCATCCGTACACTGAACAGTACATCGGCAAACCCCACGTCATAACAGTAGACTTCAACAACTCGCAAGAGTTTGAGAAAGCTGTTCAAGAGCTACTTAAATACAAGgTAGAGCCGCTGATACCATACGAGTACACTTGTGAAGGCATGCTGGAGAGAGTCAACGCTTACATCCAACATCAGGATTTTTGTCAGCGCAGCAGCCCGTTCCCTGCAGCCAACGAATCCAGATCGTGGCCTGGGAATCCACCCAGTCCTTTCCTCCAGCTGCCCAACTCCACGGCTTTGATCTGGGCTCCGAACATCAGCGCTCCGGCCTGCTGGCCCCCCCTCAGCGCCCTGCGGCTCCTGCTGTCTCCAGAGGACTCGTCCTGTGTGAAAACATGCCAGGACGCCGGCCTCATCTGCGAGCCAGCTTTCTTTCCTTTCATCAACAACATCGAGGCCTTCAATGGGCTTAATGCTCAGTGTGAGTCTCTGGAAGCGGAGAAGAACCATGTGTTTCCAGCCGTACATGCGGACAGGAGAGAGTGTTTCCAGCAGAAGGAGCCGCTGCTGTTCAGCTGTGCCGGAGTCAGTGCCAAACACCAGCGGATCTGCCCGTGCAGAGACTTCATCCAAGGCCAGGTGGCGCTATGCAGAGACTGCCTTTGA

Function

symbol description
mgat5b Enables alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase activity and manganese ion binding activity. Involved in protein O-linked glycosylation via serine. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus.

GO: NA

KEGG:

id description
ko00510 N-Glycan biosynthesis
ko00515 Mannose type O-glycan biosynthesis
ko01003 Glycosyltransferases

Ensembl:

ensembl_id ENSDARG00000115505

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050723 True 1530 mRNA 0.53 9 59117136 59167824

Neighbor

gene id symbol gene type direction distance location
XLOC_025854 rasd4 coding upstream 64142 59051503 ~ 59052994 (+)
XLOC_025853 NA coding upstream 89299 59024934 ~ 59027837 (+)
XLOC_025852 CABZ01044156.1 coding upstream 127320 58984463 ~ 58989816 (+)
XLOC_025851 CABZ01044154.1 coding upstream 150039 58961904 ~ 58967097 (+)
XLOC_025850 NA coding upstream 259653 58835461 ~ 58857483 (+)
XLOC_025856 NA coding downstream 44336 59212160 ~ 59224196 (+)
XLOC_025857 sec14l1 coding downstream 244132 59411956 ~ 60282382 (+)
XLOC_025858 pecam1 coding downstream 616808 59784632 ~ 59822428 (+)
XLOC_025859 CU693479.1 coding downstream 683713 59851537 ~ 59862797 (+)
XLOC_025860 mcrip1 coding downstream 697048 59864872 ~ 59876861 (+)
XLOC_025429 BX649540.1 misc upstream 28868100 30248739 ~ 30249036 (+)
XLOC_025848 NA non-coding upstream 305303 58806215 ~ 58811833 (+)
XLOC_025847 NA non-coding upstream 401930 58712700 ~ 58715206 (+)
XLOC_025865 NA non-coding downstream 869726 60037550 ~ 60043897 (+)
XLOC_025868 NA non-coding downstream 898564 60066388 ~ 60067768 (+)
XLOC_025870 NA non-coding downstream 1188390 60356214 ~ 60357972 (+)
XLOC_025871 NA non-coding downstream 1215298 60383122 ~ 60401867 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000112_01534218_01550547 MGAT5B coding CI01000112 null 1534218 ~ 1550876 (+)
bowfin (Amia calva) AMCG00013334 NA coding CM030125.1 CM030125.1 28610105 ~ 28610395 (+)