ptch2 (LOC106569083)


Basic Information

Item Value
gene id ptch2
gene name LOC106569083
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 63435359 ~ 63466410 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613249.2
CCTTGGCCAATGAGAACCAGATCACTTTTCCACCAAACCACCCTTTTCACGATTTGCAGAGGGGCTAGCTTCTCCAAATGTCACTGCTACGGGAACAGAGGCAGACTTAAATATCTGCTCCAGACTTTACTTCGAAAAGTTGTTTTATAAGCTATCAGGACGGATGAAGACTCAAGGATCTATACGGATTTGGGCACATAATGTTGGGATGGAGTTGCAAGACTTTGGCTCAAGGAAAGACTAGTATATATTCTCCTAATTTCTACCGGGTGGATGCGCTAGTATTCTATCTTGGATTATTGTCGCTTTTGCTGAACTCgcactgtttctctctcgcttCGCTCTGTGCTTTGTTTTTCTTGTTTGGACTATGGCCTCGGATCCCAGAGTCCCAGGGGCCGGTGTTTTTGGAGATTTACCCCCAAGTTATACACGTTCTCCGCCGCGAGTAAACTCAGATCTTCTCCGGAGACCCAGTTACTGCCACGCTGCTTTCGCATTAAAACAGATTTCTAAGGGGACGGCTGTGGGTCAGAAAGCCCCGTTGTGGATTCGGGCGAGGTTCCAGGCTCTTCTCTTTTCTTTGGGCTGTCACATCCAGCGACATTGTGGAAAAGTCCTTTTCATTGGACTGCTTGTGTTCGGTGCCTTGTCTGTGGGTTTGCGGGTTGCTGCCATTGAGACGGACATTGAGCAACTATGGGTGGAAGCCGGTAGCCGAGTGAGTCGGGAGCTGCGCTACACCAAGGAGAAGCAAGGAGAGGAGTCTGTGTTCACGTCGCAGATGCTCATACAAACCCCCAAACAGGAAGGAACTAACATTCTAACCCAGGATGCTTTGCTGCTTCACCTGGAGGCAGCGCTCTCGGCCAGCAAGGTCCAAGTGTCTCTGTTTGGAAAATCATGGGATCTTAATAAAATATGCTACAAATCTGGAGTCCCTATCATAGAAAATGTCATGATTGAAAGGATGATTGACAAGCTGTTCCCCTGTATGATTGTTACCCCACTGGACTGTTTCTGGGAAGGTGCAAAGCTCCAGGGGGGGTCAGCATACTTACCGGGGATGCCGGACATCCAGTGGATGAACCTGGACCCTCTGAAGCTGATGGAGGAGCTCAGCCAGTTCACCAGTCTGGAGGGCTTCAGGGAGATGCTGGACAAGGCCCAGGTGGGCCACGCCTACATGAACCGCCCCTGCCTGGACCCCAATGACTCCGACTGCCCCCTCAGCGCACCcaacaaggacctgagagagagtCCTGACATTTCTGGGCAGCTCCAAGGCGGTTGCCACGGCTTCTCCAAAAAGTTCATGCACTGGCAGGAGGAGCTGATCCTGGGCGGTCGGGTCAAGGACACCCAGAATGCTTTGCAAAGtGCGGAGGCACTCCAGACCATGTTTCTCCTGATGAGCCCCAAGCAGCTCTACGAACACTTTAAGGACGACTATGAGATCCATGACATCAACTGGAACGAGGACAAGGCCACCGCCATCCTGGAGTCCTGGCAGAGGAAGTTCGTGGAGGTGGCTCATGGCAGTATCCCCCAAAACTCCACTTCAGAGATCCACGCCTTCTCCACCACCACCCTCAACGACATCATGAAGTCCTTCTCTGATGTCAGTGTCATTCGGGTGGCTGGAGGCTACCTGCTCATGCTGGCCTATGCCTGTGTGACCATGCTCCGTTGGGACTGTGCCAAGTCCCAGGGGGCCGTGGGGCTGGCTGGTGTGCTCCTGGTGGCTCTGTCTGTGGCAGCTGGCCTGGGGCTGTGCTCTCTGCTGGGCCTGTCCTTTAACGCTGCCACCACACAGGTTCTTCCCTTCCTGGCTCTGGGGATCGGTGTGGATGACATGTTCCTTCTGGCCCACTCCTTCACTGAGACTGGCATCAACATCCCCTTTAAGGAGAGAACAGGGGACTGCCTGAGGAGGACTGGCACCAGCGTGGCGCTCACCTCCATCAACAACATGATCGCCTTCTTCATGGCAGCCCTGGTCCCCATCCCAGCACTGCGCGCCTTCTCTCTGCAGgCGGCCATTATTGTGGTGTTCAACTTCGCCATGGTGCTTCTTATCTTCCCGGCCATCCTGAGTTTGGACCTGCACCGTCGGGAGGTCAAACGTCTGGACATCCTGTGTTGTTTCTACAGCCCCTGCTCCTCCCGGGTCATCCAGATCCAACCCCAGGAGTTCTCCGATGCCAACGACAACACCACCCATAGCCACGCGCCTGGCGCCCAGACTACAACGACCTACACAGGCTCCACCATCACCACTAGCACCCAGATCACCACCACCGTCCAGGCCTTCACCCAGTGTGATGCTGCGGGCCAGCACATAGTCACCATCCTGCCCCCCACCTCCCAGATCTCCACCAGCCCTCCATCTGTGGTGGTGGCCACCTCCCCCGCTCCCCCTTCCCCCACCGACCCCTACGGCTCCCAGCTCTTCACCCCCTCCAGCTCCACCCGGGACCTCCTGGCCCAGATGGACGAGTCCAAGGAGGCCAGGGAGTGTGTTCCTCTCCCCTTCTTTCGCTGGAACCTGTCAAGCTTTGCCCGGGACAAGTACGCTCCTCTCCTCCTAAAGCCAGAGAGCAAGGTGGTGGTCGTGGTCCTCTTCGTGACTCTGCTGGGGCTCAGCTTGTACGGAACCACCATGGTTCATGACGGACTCTACCTGACCGACATTGTGCCCCGCGACACCAAGGAGTACGACTTCATCAACGCCCAGTTCAAGTACTTCTCTTTCTACAACATGTACCTGGTGACCATGGACGGCTTTGACTACGCCCGCTCCCAGCGTCTCCTCATCCAGCTGCACAACTCTTTCACCTCGGTCAAGTACGTGGTGAGGGACAGCGACCAGCAGCTACCCCGGATGTGGCTGCACTATTTTCAGGACTGGCTAAGAGGACTGCAGGCTGCCTTCGATGCAGACTGGGAGGCAGGCAGGATCACCTGGGATAACTACCGTAATGGCACTGAGGACGGTGTTCTGGCCTACAAGCTGCTCATCCAGACCGGCTCCAAGAAGGACCCCTTCAACTACAACCAGCTGACTTCGCGTCGTCTGGTGGATGAGGACGGTCTAATTCACCCAGACGTCTTCTATATCTACCTGACTGTGTGGGTGAGCAACGACCCCCTGGGCTATGCTGCCTCTCAGGGTAACTTCTACCCTCACCCCCGTGAGTGGATCCACGACAAGTACGATACCACCGGAGAGAACCTGCGCATCCCTGCCGCAGAGCCCCTGGAGTTTGCCCAGTTCCCCTTCTACCTGAACGGCCTGAGGCAGGCATCCGACTTCATTGAGGGTATTGAGAGTGTGCGCACCATCTGCGAGGAGTTCACCCGTAAAGGCGTGCTCAACTACCCCAACGGGTACCCCTTCCTGTTCTGGGAGCAGTACATCGGCCTGCGACACTGGTTCCTTCTGGCGGTCAGCGTGGTGCTAGCCTGCACCTTCCTGGTCTGTGCCATCCTCCTGCTCAACCCCTGGACCGCTGGCATCATTGTCTTCATCCTGGCCATGATGACGGTGGAGCTCTTCGGTATCATGGGCCTGATCGGCATCAAACTCAGTGCCATCCCAGTGGTCATCCTTATCGCCTCTGTAGGCATCGGCGTCGAATTCACCGTCCATATCGCACtgGCCTTTCTGACGGCCGTAGGGAATAGGAACAGGCGTTCTGCGGTGGCCCTGGAGCACATGTTTGCCCCTGTGATTGACGGGGCCATCTCTACTTTGCTGGGGGTCCTAATGCTGGCTGGCTCCGAGTTTGACTTCATCCTGAGgtacTTCTTTGCGGTGCTGGCTATCCTGACCGTGCTGGGGATCCTGAATGGACTGGTGCTGCTACCCGTGCTGCTCTCCCTCATGGGCCCACCCCCGGAGGTCACCCCGTCCGACAACGGCAGCTGCCTGTCGCCGGagcccctctcccctcccatgACCCACCACGGCTACTACGCGGGACACGGCCCACTCAGCCCGCGACAACAGGCCTTCTCAGAGTCCTCCGAGTCAGAGTGCTACTCTGAGACGACTACCACGTCAGGGATAGGGGAGGAGTACAAGTACGGTGACCGCAGTCCTTACATCACCCCTCCTACCTCCCACATACTGCTGGAGGCCAGCAAGAACCCCAGCTTCCCCAAGCTCACGGTGGTGAAACCGTTCCAAGGGAACCAATCTGTAACTGCTCAGAAAGAACTCTTAAATGAATCTTCTCCGAATGCGGTTAACTCGGTCAGCTCTCAACTCAAGCAGTGGGATAACAAATATGATTACAATTCTGACCAGGGACCCAGGAGGCAACATTTACCCAGTGACAGGACCCAAGGTCCTGGGAGGACTAATCACTGTGGTCCCAGGTCTCAGACACATAAAGGGCCTCATCAGAACAGGACTAAGATGCCGGCCTATAATGGCGGTACCGTGCCCAGTAGTTCTGTTACTACCATGGTTACGGCCACGGCCTCGGTGACTGTGGCGGTGCACCCCAGCGTACCGGGGGCCTACCAGGGTTACATGCATGAGGGCTACGAGGACAGTGAATCAGACTGTTTTGAGGACACTAAGAGGACTTCACAATCTTGTGGGAAAGCTCCCCAATCTTCCAAGCGTGAATCCTTGGAGCTTCAAGACCTGGAATCTGTACAGAACCACTATCAGGCAAACCAGGCACAAGGTGGCCCATGGATCCAGGCAGCCAAAGATTGCTAGACACCCTGCTACCCCACCCTGCCCCTATGTCTGGAATCCTTCTCTGGCTGCCTCCGATACCCAGCCCGTTCTCTTTGATCTGTACATAGACCTCACACAGACAAGAGGATTTATTTGTAAAGATATTAAAAAAAGGTCTTGttttaagaatatataaatatatgagtATATATTTTAATACTAAAAAGAGGGAAACAACTATTTAAAAGAGTACTGTATAACTTGGCTATTCTCTTGTGTAGAGTCAGATATATAAgatgattgggggggggggggggtcctcccTTTGTATAGATTTAGAAGATGCTATATGTAAAACAGTTCAGAGTCAGGGGTTATTAAGATATTAGGTTGTTGAAAATACAAGGccagtgtttgtttttttgctgctacacttaaaaaaaattgaaataatttgcagtacccccctccccccgATCTAAGTTGAGAATTAACTTGAGATATTCTAGATGTTCTTACACTGAGAGTGGAGGGTGCCTTATTGATTAAGctccgtaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactagctatgATCTATTCAGATGATCCATTGTTGGTCATTGATTGCACTGTACAAATACAAACAAGCTCAGTAAATCTTTTCTTCCTCTTCTACCAATAACAACCATTGTGCCTTCACAACACCTACCCTCTTGGAATTCATAAGCACAGTATATATATTCAAAGTTggatgtaaatatgatatttgtCCTGTTTGTTTGAGAGCATAATTTCATACCTTTTTTTTCATGTTAAGAATCCCCTGATATGTACAAGACGTGTTTTCATTTACTGGTGTGATATGATGCAAATACTATTAGCAAAACAATAGCATATTCTCCTTTGGTTTCTTCCATAATACACAGGCTGCTCATCCAGAATAAAGCCCGTGTTCAGACAGTAAATTAATATATTACCATGTATTGGTCCATTTCAATCACCTGTagctctgtatgtctgtatgcaGTCAGCAACTTGACTTGGTGTCACTTTGGGTTGAAGTTTCTTGAGCGTCGTTCATTGTGTCCCAGCTCACTGGCATGTTGCATTATGATCGTTGTCTCGTTGTTATTTTGCAGTCTACATGTTTTATTACTTGAAGGAGCTATGAGAAGAGTTTTTTTTCTTTCCTGGGGTTATCTAAGCTGTACATTGGGTAAGGCTAACTTTGTCATCCCCCCCCTCGTCCTCCAACTCAACTGGGGTCTAAGGGGTAATATTTGACTAATGCTGGTTGTTTACCCAATTTTATTCTGAAAGGGAATTTATATCAAATGCAAAGGGAGGTTTTTGTTTTCTCTTAAATGTTTTGGCTGCTTTAGGTTTGTGGTAGACATTATTTCAACCCTGTGCAATTGTTGACTAGGTAGTGCATTTTGTGCAGAGAACTACTCCAAGAACcacttactgtctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcgctctctcacgtCGTTGTAGCTCACATGCAAGCCAGCATTTCTGTGATTTAGTTTTTGTTTAATTTGTACGTTTGTATTATGGACAAAGTTCAGTCGTTCAGTATTGGTCACATCACTGCCAATTTAAATGCAGGGAAATGTAATAGATTTAGGTGGCAGCTTGGGTTTCTTTGGTACATAGAGTTATGAAAGAAAAATAAAGTAGCTACTGTGCATTCTGGAAGTAAACAACAAAATAATAAGAGAACAACCTACATTCATTCACTGCTTCAATACAGAAATACCTGAGTGTGTAAGTTATATGAGTGGGAGGGTGGGGGTTCGTTCAAATGTGTGTCATGCCATATAAATTATTTATATAAAATTTTATTTTTGTAGTTTGTACAGATGTTAGTCACTAGACTGAAGTTCTATTTTTAAAGagtaaatatatattatatataattatatctaTTGTTACagatttgttttttgttgtttttgtttgtttggttgCTATTATTTTTGTGAGGGGTGGGAGagcgggggagggggggtggggggagtgggagggagttGTCCACAATGAGTAGGGGGGGTTTCAGACAGaccctgttttgtttttgttttttggagAGAAGGGTACACTTGGAAAATGAAGGAGAGGTGTGGCAGACACTGTCCACCATGTTACGTTTCCTTACCTTTCCTTCTTCATTTAATGATTTGAAGTTGTACTCTTTTTGTCGATGTCTAAAACACTGTGACTTCCGAAAACTATGCTCAAGAAAACCCTTGTGTGACCATTATTTTCCCTCACCTTCTATACGAATTTAACTAACAAAATAAATTCAAATGAAAAAAAA
>TU832808
ctagctatgATCTATTCAGATGATCCATTGTTGGTCATTGATTGCACTGTACAAATACAAACAAGCTCAGTAAATCTTTTCTTCCTCTTCTACCAATAACAACCATTGTGCCTTCACAACACCTACCCTCTTGGAATTCATAAGCACAGTATATATATTCAAAGTTggatgtaaatatgatatttgtCCTGTTTGTTTGAGAGCATAATTTCATACCTTTTTTTTCATGTTAAGAATCCCCTGATATGTACAAGACGTGTTTTCATTTACTGGTGTGATATGATGCAAATACTATTAGCAAAACAATAGCATATTCTCCTTTGGTTTCTTCCATAATACACAGGCTGCTCATCCAGAATAAAGCCCGTGTTCAGACAGTAAATTAATATATTACCATGTATTGGTCCATTTCAATCACCTGTagctctgtatgtctgtatgcaGTCAGCAACTTGACTTGGTGTCACTTTGGGTTGAAGTTTCTTGAGCGTCGTTCATTGTGTCCCAGCTCACTGGCATGTTGCATTATGATCGTTGTCTCGTTGTTATTTTGCAGTCTACATGTTTTATTACTTGAAGGAGCTATGAGAAGAGTTTTTTTTCTTTCCTGGGGTTATCTAAGCTGTACATTGGGTAAGGCTAACTTTGTCATCCCCCCCCTCGTCCTCCAACTCAACTGGGGTCTAAGGGGTAATATTTGACTAATGCTGGTTGTTTACCCAATTTTATTCTGAAAGGGAATTTATATCAAATGCAAAGGGAGGTTTTTGTTTTCTCTTAAATGTTTTGGCTGCTTTAGGTTTGTGGTAGACATTATTTCAACCCTGTGCAATTGTTGACTAGGTAGTGCATTTTGTGCAGAGAACTACTCCAAGAACcacttactgtctctctctctcacgtCGTTGTAGCTCACATGCAAGCCAGCATTTCTGTGATTTAGTTTTTGTTTAATTTGTACGTTTGTATTATGGACAAAGTTCAGTCGTTCAGTATTGGTCACATCACTGCCAATTTAAATGCAGGGAAATGTAATAGATTTAGGTGGCAGCTTGGGTTTCTTTGGTACATAGAGTTATGAAAGAAAAATAAAGTAGCTACTGTGCATTCTGGAAGTAAACAACAAAATAATAAGAGAACAACCTACATTCATTCACTGCTTCAATACAGAAATACCTGAGTGTGTAAGTTATATGAGTGGGAGGGTGGGGGTTCGTTCAAATGTGTGTCATGCCATATAAATT
>TU832809
ctagctatgATCTATTCAGATGATCCATTGTTGGTCATTGATTGCACTGTACAAATACAAACAAGCTCAGTAAATCTTTTCTTCCTCTTCTACCAATAACAACCATTGTGCCTTCACAACACCTACCCTCTTGGAATTCATAAGCACAGTATATATATTCAAAGTTggatgtaaatatgatatttgtCCTGTTTGTTTGAGAGCATAATTTCATACCTTTTTTTTCATGTTAAGAATCCCCTGATATGTACAAGACGTGTTTTCATTTACTGGTGTGATATGATGCAAATACTATTAGCAAAACAATAGCATATTCTCCTTTGGTTTCTTCCATAATACACAGGCTGCTCATCCAGAATAAAGCCCGTGTTCAGACAGTAAATTAATATATTACCATGTATTGGTCCATTTCAATCACCTGTagctctgtatgtctgtatgcaGTCAGCAACTTGACTTGGTGTCACTTTGGGTTGAAGTTTCTTGAGCGTCGTTCATTGTGTCCCAGCTCACTGGCATGTTGCATTATGATCGTTGTCTCGTTGTTATTTTGCAGTCTACATGTTTTATTACTTGAAGGAGCTATGAGAAGAGTTTTTTTTCTTTCCTGGGGTTATCTAAGCTGTACATTGGGTAAGGCTAACTTTGTCATCCCCCCCCTCGTCCTCCAACTCAACTGGGGTCTAAGGGGTAATATTTGACTAATGCTGGTTGTTTACCCAATTTTATTCTGAAAGGGAATTTATATCAAATGCAAAGGGAGGTTTTTGTTTTCTCTTAAATGTTTTGGCTGCTTTAGGTTTGTGGTAGACATTATTTCAACCCTGTGCAATTGTTGACTAGGTAGTGCATTTTGTGCAGAGAACTACTCCAAGAACcacttactctctctctctctctctcgctctctcacgtCGTTGTAGCTCACATGCAAGCCAGCATTTCTGTGATTTAGTTTTTGTTTAATTTGTACGTTTGTATTATGGACAAAGTTCAGTCGTTCAGTATTGGTCACATCACTGCCAATTTAAATGCAGGGAAATGTAATAGATTTAGGTGGCAGCTTGGGTTTCTTTGGTACATAGAGTTATGAAAGAAAAATAAAGTAGCTACTGTGCATTCTGGAAGTAAACAACAAAATAATAAGAGAACAACCTACATTCATTCACTGCTTCAATACAGAAATACCTGAGTGTGTAAGTTATATGAGTGGGAGGGTGGGGGTTCGTTCAAATGTGTGTCATGCCATATAAATT

Function

NR:

description
PREDICTED: protein patched homolog 2

GO:

id name namespace
GO:0007224 smoothened signaling pathway biological_process
GO:0043010 camera-type eye development biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0009954 proximal/distal pattern formation biological_process
GO:0048635 negative regulation of muscle organ development biological_process
GO:0010002 cardioblast differentiation biological_process
GO:0001649 osteoblast differentiation biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008158 hedgehog receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613249.2 False 7163 mRNA 0.50 20 63435359 63466410
TU832808 False 1244 lncRNA 0.37 2 63464610 63465917
TU832809 True 1256 lncRNA 0.38 2 63464610 63465917

Neighbor

gene id symbol gene type direction distance location
LOC110530316 LOC106569082 coding upstream 4782 63375496 ~ 63430577 (+)
LOC110530313 LOC106569079 coding upstream 146530 63281006 ~ 63288829 (+)
LOC118965630 NA coding upstream 155921 63276527 ~ 63279438 (+)
LOC110529126 NA coding upstream 176791 63252168 ~ 63258568 (+)
LOC118965541 LOC106569076 coding upstream 229113 63188433 ~ 63206250 (+)
LOC118965542 NA coding downstream 93246 63559656 ~ 63570616 (+)
atp6v0b atp6v0b coding downstream 136788 63603198 ~ 63612720 (+)
LOC110530319 b4galt2 coding downstream 146952 63613362 ~ 63760514 (+)
ccdc24 LOC106569089 coding downstream 311925 63778335 ~ 63802563 (+)
LOC110530325 LOC106569259 coding downstream 836071 64302481 ~ 64336545 (+)
G733309 NA non-coding upstream 89822 63345198 ~ 63345537 (+)
G733211 NA non-coding upstream 92498 63342582 ~ 63342861 (+)
G733210 NA non-coding upstream 93723 63341391 ~ 63341636 (+)
G733206 NA non-coding upstream 99961 63335185 ~ 63335398 (+)
G733204 NA non-coding upstream 103662 63331383 ~ 63331697 (+)
G733391 NA non-coding downstream 37508 63503918 ~ 63505336 (+)
G733390 NA non-coding downstream 39248 63505658 ~ 63505981 (+)
G733403 NA non-coding downstream 55315 63521725 ~ 63521999 (+)
G733669 NA non-coding downstream 228456 63694866 ~ 63695637 (+)
G732350 NA other upstream 552411 62797701 ~ 62882948 (+)
G732052 NA other upstream 1031168 62402949 ~ 62404191 (+)
G730694 LOC106569104 other upstream 1563799 61867561 ~ 61874667 (+)
G733571 LOC106569085 other downstream 81177 63547587 ~ 63548743 (+)
LOC110530334 LOC106569251 other downstream 1079870 64546280 ~ 64551340 (+)
G734690 LOC106569249 other downstream 1152630 64619040 ~ 64620007 (+)
LOC110530343 LOC106569291 other downstream 1230903 64697289 ~ 64698526 (+)
G735047 NA other downstream 1355205 64821615 ~ 64822045 (+)
G733358 NA non-coding upstream 16608 63447711 ~ 63448002 (+)

Expression


Co-expression Network