LOC110530319 (b4galt2)


Basic Information

Item Value
gene id LOC110530319
gene name b4galt2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 63613362 ~ 63760514 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613255.2
TACTAGAGATGTGCCATGCTGATAGGACCTAGTGTAAGCTCCCTCTGGTGGCAGAATACCCGAGAGTTTGGACCAACTGAGACTCcgtactgaagagagagagatgaacctgcTAGAGTCTCCTTTTTGCTTCATATCAACACCAAACCTAACGGATTGACTGAATTATGTAGATAGAAGATTTACTACACTATATTTGGCATATTGCCCTCCGTAAATGATCAAACAAAATGAGGCATTCATATCTGCCATGTCTTTTATATGGAAAAACGTTTTTAACAGTATCTGCACGAAAAATGAAATGACCGATTTTATCATCAGAAATAAAACGGGCTCCATGCTTTATTACGTGCATTTTTTTTgagttttttttgttattttagttttttttaaatgacatttaCAGATTTCATATAAAAGCTTGGTGCAACAAAAAGGAAATGCATtcatagaagagaggaggattgCTTGCCACCTCAAGGTGATAGTGGGAGCCAGTGTGCAGCAGTCCAGGCCCAGGGGAGGGACCGACCGAGTGGATGCCCCAGGCTGTGCGGCAGGGGCGACAGTCTCGACCATGACTCGGCTGATGCTGGGCCGAACACTGGAGCGCATCTGCAAGGCTGTCCTGCTGCTCTGCCTGGTGCACTTCGTCATCATGATGATCCTCTACTTCGACGTCTACAGCCAGCGCTTCGACCAGATCTTCAGCCGCTTCAACAACGGCCGCAACGCCAGCCGCAACggacaccactactactacaacctcaGCCGGCCCAACGCCACCTACGCCAGCTACCTGGCCACCGCAGACCAGCTGCTGCCCACCGTACGACCCGAGGGAAACCACACGCCGCCCACTACCAAGCCCATACCACCTTGCCCGGAGATACCCCCTGGTCTAGtGGGCCGCCTCCTCATCGAGTTTGCCTCCCAGATGACGATGGAACGAGTGCAGAAGGAGAACCCCAACGTGACAGAGGGGGGCAAGTACACCCCACCGGACTGCCGCGCCAAACAGAAGGTGGCTATCATTATCCCgttcagacacagagacaaccaCCTCAAGTACTGGCTGCACTATCTGCACCCCATCCTACGACGGCAGAAGATCGACTACGGCATCTATATCATAACCCAGCTTGGTGAGGAAACCTTCAACAGAGCCAAGCTCCTGAACGTGGGCTACACCGAGGCCCTGAAGGATGCAGAGTATGACTGCTTCATCTTCAGCGACGTGGACCTCATCCCTATGGACGACCGTAACCTCTACCACTGTTACGACCAGCCACGACACTTTGCCATCGCTATGGACAAGTTTGGCTTTAGGCTTCCTTACGCTGGGTACTTTGGCGGGGTTTCTGGGCTGAGCAAAAAACAGTTTCTCAAGATCAATGGCTTCCCCAACGAGTACTGGggctggggaggagaggatgacGATATCTATAACAGGATCACCCTCAACGGGATGAAGGTGGTTCGACCGGACGTCCGGATCGGCCGCTACAGGATGATCAAACACGAAAGAGACAAGCACAATGAACCCAACCCACAAAGATTCAATAAGATCCAGAACACCAAGAACACTATGAAGAGAGACGGGATCAGCACGTTAACGTACCGCGTGCTCCAGTTTAAGAAGTACCCTCTCTACACCAACATCTCTGTGGAGATCGGCAAGCCCCCGCCCCGGCCTTTCAGGggatagacagatagagagacccGGCctggacatggagagggagggagatggggcagagaaCGATAATGCACAGTAGAGAGCCTCCATCTCTGCCTCCACCTCCCTCAGCCCGACGCAGACCCAGATACCCCCACTGACCTGGGCTAGGAGCCCGCCAAGACCCCTCACAGCCCACTCTGAGTGGAGACACCTGTTGCAGTCCAACACTGCTCACAGCTCAATGGTTACGGCAGGCCTCCAACCTGGGATGCTGACTAGCTGACTCTGGGGGGACTAACTCTCAGGAATAGATGAAGAAGGGGGATGTATTAGATCAGATTCATTCTCCTGGCTGGAGCCACAGTGCTGTTCTGGAAATGTGCATACTGTACATGAAACACACAGCAATAGGGATGAGGATGTCCAGGGTTCAAGGGGAGTCATATCGACATTGGATCGTTGACACGCTGGGGGTTGGGTTTGGGATTCAGAGGTACTGGAGCAGAACCAAGAAGTGCAGCCCTGATCTCTCTGTGAGAATCTATCTGTCAATCAGAACACACTATATTGGCGCAAAATGAATGTGTACTGTCTGTGCCTGCATCTAACGCAGGCTTTCTCCATTTCCCATGTCTCTGCCATTGACAAATGGTTCTGAAGCAGAACGACATTGTGCACCAACTCCGGTCTCTCTTTGGTCTCTTTTGCTTGTGACAAAGAATTGTTACTATCTGTGGATGGAAACAAGTTTGAGAGACATATAGTGAATAAAGACCTAGTAGTGGATGGGTATGACTATCTAAGGAACTGGTTTTGACCTGTTTGTGGAGAAGAGAGGTCCAGTAAAAAGAACATAAGATGAACTTCTGGCATGGTTCTAACAGGTGATCATCAGACGTGTTCTGACGTGTTCTCACTCACAAAGGTTATAGTAGATAGTGATGGGAGTTTAAACCTTTGCTGTTCAACAATGGATACCGGCAGTTTTAGAAGAGGATCATATCTTGCTCCAAATGCGAGACTCTTTACTCATTTTTTTTTAGTTTTCATTTAGAATTTAATAAAATGATAAGGCATTGATAACCTAGTGGTGGGAATTGTGAATGATGTTGATAAGGAGAGTCTAGTATGGTGAATATTTGCATTGTAGCATTCATTCCATCCATTCCGAGGCAGAAGCACACTGCACTGAGGTGATAAGAACACAACGGAAGTTAGTTATTTCCTCAGGGTGGATTCCCCTAGAATAAATGGAAAACTAGCCCACATACAGTAAGAACAAATCTAATATCCTATTACTATTAACACTACCAGTGTATGAAAGCCTTTTAACGTCTTAAGTAAGTAAGCTttttcttctctcactctcttctccttTTTTTGTACTGCCTAAACACCAAACTGATGCCTTCAGAATTTTTATGAGGGGCAATGATAAGGAATGCTGcattttgggattttttttaatGACGTTCCTTTTGTGTGAAGTGACGTGGAAATCTTTTTGTACTATCAATGGTTTTCTTGGCCAGGCTTGAGTCAGTGAGTATTTAGAGATGCTCCAACCAGCCAGTTTCCCCTCTGTTTATTTTTAAGAGTCTTTTAAAGATGGAGTGCATTTCCCTTTTTTCTCTCGACAACACCCTCCACTGCCTTTTATTCCTCTCTCTGGCAAGGCCATATCTCTCTCTTTGTGCCGTGTGTGTCTGTGAACACCACAATGTTTCTCTGTACTTGGCCATCTGatgaacacacagacagctgTATCTGAAGCACAGTGCTCCTCTATAGAAATATCAGCGGGATTTCAACaatcctctctcgctctctctcttttctctcctctctctctcgttctactTTTTCATTTTTCAGTTCGTTACTACTGGTGTGAGTTGTTGTGCCCTTGGAAAAGAGAGCACCACGCAAAGTGAATACTCTACTCCCCATTCAACACTGGAGACGGATGTCCTTTTACACTACTCCATTTAAATGTAACTGTCAAATGGGTGTACTGTGTATGCACTGCTCTCTGATGACTGTGGACCACAGGATTTAGAATTTCACATATTCCTGCCTATGGTCCCAGTATAGTATGATTCATCAGGCTGCCAAGCTTCTGCTTTTATGTTCAATGCTGAGGGAATAATTCTCCAAAAGGCTAAATATACTACTTGGAACTTTGAGAAGGAGCTTTTACATATAGCTAGCATCCTCATTGCCTAAAATCTGTTTAACAGATTCACTACTGATGCAGCACACAACCCGAGAAAACTTGGTACTGAAGTTGTATTCACTGGTTTCATTaaagtaaatatttttttattttttttgccaatGATGGCTTTTTATCATAACTCCAGAGAACTCCAAGAAATTGTTGTATATTTAGTTTAGTGTACGGTAGACTACAGGATGTGATTTCTGTACATATCAGACTTGTAGACTCACTCAACAGCTAGTAGCGATCATTACAGGTGCATGGACAGGCATTATCATGTCATTTGTGTTGTGAACAGAGGAAAACGTATAATAGAACTCAGTCTGTTCTGTTGACTTGATATCTATATAGAGATCATGAACCAAGTAGGCTACAACAGGAATAATAAATCCTATTGGTTCTATTATATCAATCTAATCATGAATCATATTGATATATCCATGATATTATCTTGTTTGGCCTATAGGCTGTATTCTGCCCCACTACCCCACACATAGTGACTGTGGTATAACATTGTAGGTACTGTATAATATAGATTTGATATGATGCGTATTGACAGGGGGACCTTTCAGCATAAGTTTAGAGACATCCTTCCCAggactatctctctctttcacaactCGCCAGCTATGAATCAGTGCTAAAGCAGCACTCtttgtctgcgtcccaaatggcaccccattccccacgtagtgcactacggggcccctatgggccctggtcaaaagtagtgcactatgtaggcaatagggtgtcattttggttGCATCCCTTTGCTCCCACCCTCCCTGCAGTCAACTATTATTATCTTCAGTTTGTCCTGCTAATGTATAATTGCGGAGCATCAGCTTTTTTCGTTGACCATGTTTTTGATGCAGCCTTGAGTAGGAAAAGTTGACAGGTGGAATGCTAATGTACTATCCAGCCTTTGGAGTGTGTCTGAAGttctctcttcatccatctccTGTTGGCAGACATTGCACAGCTTCCTCCTTCTTATACGTTTCAACTTACTGCTCATTGAGCAATCTTTTCCATAATTGTCAGAGCCGTTGTTTAAAGGAAGTGGTGGGTAACTGAAACAGGAACAAGATAGGATGAGGGCATTGGAGAACAACATCAACTACTGACTGCCTCAGGTCTTCAAGCCTGAGTGCATTTTTAAAGATTTACTGTATCTATCTAGGTTTTGTACATTGAATGTTGAAAATGTTATATCTTATATAGAATGCATAATGTCATATCAAACCTACTTTTTCTATACAATCAATAAATCTGATGGTAAATGAGA

Function

symbol description
b4galt2 Predicted to enable galactosyltransferase activity. Predicted to be involved in glycosylation. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in Golgi cisterna membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human B4GALT2 (beta-1,4-galactosyltransferase 2).

NR:

description
PREDICTED: beta-1,4-galactosyltransferase 2

GO: NA

KEGG:

id description
K07967 B4GALT2; beta-1,4-galactosyltransferase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613255.2 True 5193 mRNA 0.45 7 63613362 63760514

Neighbor

gene id symbol gene type direction distance location
atp6v0b atp6v0b coding upstream 642 63603198 ~ 63612720 (+)
LOC118965542 NA coding upstream 51602 63559656 ~ 63570616 (+)
ptch2 LOC106569083 coding upstream 146952 63435359 ~ 63466410 (+)
LOC110530316 LOC106569082 coding upstream 182785 63375496 ~ 63430577 (+)
LOC110530313 LOC106569079 coding upstream 324533 63281006 ~ 63288829 (+)
ccdc24 LOC106569089 coding downstream 17821 63778335 ~ 63802563 (+)
LOC110530325 LOC106569259 coding downstream 541967 64302481 ~ 64336545 (+)
LOC110530327 LOC106569258 coding downstream 580770 64341284 ~ 64344020 (+)
selenop2 LOC106569257 coding downstream 586237 64346751 ~ 64349881 (+)
elovl8a LOC106569295 coding downstream 591155 64351669 ~ 64358704 (+)
G733403 NA non-coding upstream 91363 63521725 ~ 63521999 (+)
G733390 NA non-coding upstream 107381 63505658 ~ 63505981 (+)
G733391 NA non-coding upstream 108026 63503918 ~ 63505336 (+)
G733712 NA non-coding downstream 11375 63771889 ~ 63772109 (+)
G733716 NA non-coding downstream 16262 63776776 ~ 63777068 (+)
G733726 NA non-coding downstream 30898 63791412 ~ 63791707 (+)
G733729 NA non-coding downstream 36627 63797141 ~ 63797369 (+)
G733730 NA non-coding downstream 37212 63797726 ~ 63797966 (+)
G733571 LOC106569085 other upstream 64619 63547587 ~ 63548743 (+)
LOC118965541 LOC106569076 other upstream 408466 63188433 ~ 63206250 (+)
G732350 NA other upstream 730414 62797701 ~ 62882948 (+)
G732052 NA other upstream 1209171 62402949 ~ 62404191 (+)
LOC110530334 LOC106569251 other downstream 785766 64546280 ~ 64551340 (+)
G734690 LOC106569249 other downstream 858526 64619040 ~ 64620007 (+)
LOC110530343 LOC106569291 other downstream 936799 64697289 ~ 64698526 (+)
G735047 NA other downstream 1061101 64821615 ~ 64822045 (+)
G735064 NA other downstream 1070110 64830624 ~ 64830903 (+)

Expression


Co-expression Network