ccdc24 (LOC106569089)


Basic Information

Item Value
gene id ccdc24
gene name LOC106569089
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 63778335 ~ 63802563 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613266.2
TCTCGCGATATTTCTGCCTTGGAGACAAGAACGCTTACACTGGAAACAGAAAGCAACAAGATAAAGTTCCTCATGGAAGAAACCGAATCAGTGTGGAATATTATCGTGGAGCATGTCCCAGAGTCAGAGCTCTCAGAGATCCGGGTCCTTCTTGGAGATGCTCTGATTGACATATacacagagatgtattcagagGTCACTATGTGGCAGCAGATTTGGCAGACGTTGCGCCTTAAACAGGGTAACAGGCCGAAGGCCCCTCGCTCCCCCCTGGCGGACCCCCCTGCTATCAAGGAGCTGCTGAAAGCTGAGATCCAACTGCTGCTGGCcaccgtgagagagagagcagcccaggAGGGCAGGGATGCAGACGCAGACTTGTTCCGGTACAGTCCTAGTGTGGTGAATTATGCCTTGGGTGTCCCGAGCAACCGTTGCGACACTGTGAATAGTAGGCCTACCTCTAGTGGAATACAGTTCAGccagagtcaacatgtaggaagGTCCTGTTCACAGAGCTCAGTCACTTCTACTAccaaccaagatgacattgatgCCATGAGACACATGCTGAACATCACCCACATAGACGACATTGTGGCCCACCTCAAATCAGTCCTGTCAGAAGAATGCAATGTGCTGAAAAGCCAAGTTCAGTTTCTGCAGGAGAGTGTGGAACAGGAGCACCAGACACAGCATGATGTCACTGAGGCTCCAGAGCCCACTGTAACAGAGcttaaggaggagaggagagccatcCAGATGGATATGAAAAGGCAGAGCCTCAGCCTCACCCactgtccctcctcctcccctgtggaAACAAGCCTGCAGATCAGATCCAGGTCGACAGGATGGACAGGTTTTTCTGTAGATGAGACACAGAGACACTTGATCCCTGTGGTGGCCACCAGACCCCATCCTCCTCATACCAAGCCACCTCTAGTAACATCTCTAGTAAGGAGTACTCCTCCATTAGACAGGATGAGAGGCCAGCCACGTAGCTCACCCAACACCAGAGAACCCAGCCCTCTCCAACTGTCTAAATATGAACAGCTAAGGACTTATAGCCAGATCTCTGAGGCTTCCCACACCTGCAACAGAggacccaccaccaccaccacccaagaCAGGGACAGCTACCTACCACCCCTGGTCCTCTCTGCCAGTACACTAACCAGCCTTGAACCCTACCTTAATCCTCCCTCAGAAGAGAGAGTAAAAGGCAGAACTTACAGGCGTAGTGGTCAGACTGTGACTGAGGGAGCTCAAAGACATGATGACTCATGGTCAGACTCAGTGAACAGCTGGCCCTCTTTATCCTCTGGTGGACACTCTCCTCTAGGCTCCTCCACACAGCCTCCTGGGAGCAAAGGGAGCTGTGAGCAGATGAGCCCCGTAAGGATGTTCCACCCTGCTCCCCCCGCCATGCAGAGGCCAACCAGTAGAGGGCAGAGTGTGGCCAGGCACATGTGTCTGCCACAGCGGGACAGCCTGGTCAGCTCCTTGTGAACTGAACTCTTTACTACAGAAGAAgatacacaggcagcccaattcagattgtttttttgaccaatcagatctgaaaaatatctgatgtgattggtcaaaagaccgaTTTAGTGGGAAACGTATCATTATTGTGCTGCTTGTATAAAGGCAACCTCTGATACTGTAATATATGTTCTAGCTGCAGTCTGGTCAATGTATGTCACTCCTAAAATGAGATATCCTCACAAACATGTATCTTATCACAGGTCAATAGTACTCATACTTGTAAAAGGGATGTCGTAATCTCTTTAATATAAAGAATGAGTGCTGGCATTGGCTAGTCTTCCACAATGAGACAAGAGGCACAGGGATGTTATATGGTGATTTTCAAGAGACTGGTAGAAGACCTGAAAGAGAACAGGACAATATGGTTGAATGCTTTTGAAATGATTAAACATTTGAACTACATATTCAACCATTTAATGAATGCATTTTGAATAAATATGAATGTATTTGGACAAATG

Function

NR:

description
coiled-coil domain-containing protein 24

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613266.2 True 2015 mRNA 0.49 9 63778335 63802563
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Neighbor

gene id symbol gene type direction distance location
LOC110530319 b4galt2 coding upstream 17821 63613362 ~ 63760514 (+)
atp6v0b atp6v0b coding upstream 165615 63603198 ~ 63612720 (+)
LOC118965542 NA coding upstream 216575 63559656 ~ 63570616 (+)
ptch2 LOC106569083 coding upstream 311925 63435359 ~ 63466410 (+)
LOC110530316 LOC106569082 coding upstream 347758 63375496 ~ 63430577 (+)
LOC110530325 LOC106569259 coding downstream 499918 64302481 ~ 64336545 (+)
LOC110530327 LOC106569258 coding downstream 538721 64341284 ~ 64344020 (+)
selenop2 LOC106569257 coding downstream 544188 64346751 ~ 64349881 (+)
elovl8a LOC106569295 coding downstream 549106 64351669 ~ 64358704 (+)
zswim5 LOC106569256 coding downstream 630542 64433105 ~ 64498150 (+)
G733716 NA non-coding upstream 1267 63776776 ~ 63777068 (+)
G733712 NA non-coding upstream 6226 63771889 ~ 63772109 (+)
G733669 NA non-coding upstream 82698 63694866 ~ 63695637 (+)
G733403 NA non-coding upstream 256336 63521725 ~ 63521999 (+)
G733697 NA non-coding downstream 166 63802729 ~ 63803385 (+)
G734048 NA non-coding downstream 130083 63932646 ~ 63933195 (+)
G734104 NA non-coding downstream 182765 63985328 ~ 63987090 (+)
G734136 NA non-coding downstream 238144 64040707 ~ 64040929 (+)
G734137 NA non-coding downstream 241950 64044513 ~ 64045112 (+)
G733571 LOC106569085 other upstream 229592 63547587 ~ 63548743 (+)
LOC118965541 LOC106569076 other upstream 573439 63188433 ~ 63206250 (+)
G732350 NA other upstream 895387 62797701 ~ 62882948 (+)
G732052 NA other upstream 1374144 62402949 ~ 62404191 (+)
LOC110530334 LOC106569251 other downstream 743717 64546280 ~ 64551340 (+)
G734690 LOC106569249 other downstream 816477 64619040 ~ 64620007 (+)
LOC110530343 LOC106569291 other downstream 894750 64697289 ~ 64698526 (+)
G735047 NA other downstream 1019052 64821615 ~ 64822045 (+)
G735064 NA other downstream 1028061 64830624 ~ 64830903 (+)

Expression

ccdc24(LOC106569089) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 30.
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ccdc24(LOC106569089) Expression in each Bioproject

Bar chart with 21 bars.
ccdc24(LOC106569089) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
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Co-expression Network