LOC110530327 (LOC106569258)


Basic Information

Item Value
gene id LOC110530327
gene name LOC106569258
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 64341284 ~ 64344020 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613281.2
CTCAAACCCGTGACGTTATCAAACAACCGTTGAGGGCAGGTGCGCCATTTTGGCTCAAACAAAGTCGGAAATTATTTACTTTGCAATTTCATATTATTTGGCATGCTAATATCGCTTAATACTTTTGTGAACCTTTGGGATGATAAAATATCTTATGTGAGCTCATGGTTCAACCATGTTCTATTTAGTTTTGTTTCCTATGAGAACAAGTGTAAAGTTCTGGTAGCCTTCGCTAGCTACAAGCTAGCTCTGTTGTTTGATTGGAATGCAAGTAACTGGGGCTATAGTTcgcttgctagctagctgcatGCAGCAGTTTTGACTTGTTAGCGCGATAGGTATGGGTGGGTGTTCCGCTCCAAATTGCTCAAACTCAACAACCATTGGGAAGCAACTATTTCGTTTTCCGAAAGAGCCTATACGCAAGAATAAATGGCTTGTAAACTGCCGGCGTAATTTTGTACCAACTCCACATTCCAGACTGTGCCAGGACCATTTTGAGCTGAGTCAGTTTGAAGAAATAGCCAGGTCGCCAGCAGGGGGAAAGAAGCTGAAACCAAACGCTATCCCCACTCTTTTCAGTGTGCAAAATCCACCTTATCCCATCACCCCACAGATAGTGCTACCTTTCAAACCAGAGCCAGAGAGAGATCTGAATGTGGGGGATCATGGCTATGCACGGCGGCAACCAACTCTGGGCATGGAGGAAGATGCTGATGAACTACACAAGGCAGAGGAACGTCCTTGCACCCATTGTCAACCTTACAAAACCCTGCTGGAACAAGAAATGCAACACACTGCCAGACTTCAGAAAGAGGCTGAGGAAATGAAGAAGAGGATGTTCAAACTGGACAGAATAGAGAGGGGCCTCCAGACATTTCTGTATGAAGACCAGATCcgtgccctgaccctgaccaagCGTTCCCGGAGAGCTGTGTGGTCCCACGAGACAGTGCTGAAGGCTCGTAAAATCCGATGTGCAGTCGGTGCCAAGGGTTATGAATTCCTTCGGGAGTTAGGCTACCCTTTGCCCTCTTATAGAACTTTATGCAACCGCCTGGAGGAAAAAATCATGGTGACGACAGCCATGGGCTGTGATGAGCTTGCAGAGCTTGGTCTAGGAATCATATCTACATGTGACAGTCCAGAGGGAGATGGGGACAATGAGGAGGCTTTCATTGGAGTGATGTCATGACTCATGAATGAGAGATATTTGATCAATTTGTTTGACTATGTGTTTCATTTTGAAGAATGCAAGGCAAAATGACAGGACAATATAACAGAGACTGAGGACAGCTAGTAGCCCTATGCGGTGAAGAACATGTGGAAGCATATGTACAATGGGAGATGTTAGTGTTAAAGCGTTCTTGCTTCTGGACTTGGTTTCACAtaaaaggtttttttttttttagaatggTTTACTCATGCTAAAGAATTTGGTGTTTTATTTTGGGAATGACACGTAAGCTccttcaaaacaataaagagcaGCAGTCATCTGCCTTAAAGCGGCAATcggcagtagaaacaataacaaagcggccTCCCCACCCCTGGCTCAGTAAAAAGCTGAgcgatggggctggagaaattgaATATAGATGCAAGgattgaccatccatgatatcaaaattatagttttaatcatgttttgaggctatatagtgtttgttacATTTTCTTTGtctacaaacattggagtaaaacaagcttatatttggaGTTCTAATGGGgtttgacagttgaactaagttcACGAgacataagttatattcttcaagaatcaatgagtaCACAttcaagtccaaaaatggatgtagcaactgctgattgctcCTTTAAGCTTTGAAGCTGCAATTTCAAATCACCTTTGTGCTCAATGTGAGGTCATAATTCAGAAGCTACGCTAAATAATTTGTTGTGCACCTTTTTTCTTCAGAATGTTTGACAAATGCAAAGGAAGAGCAGAATTTTTACCCCTGTTTGCAGAGTTTTTAGTTGCTCTTCATTGTCACTTATGTTAAGTGGACAAATTGGAGGATTCGTTTGTATTTTGTAATGGGAATCTGTTTAGCTGCA
>XM_021613280.2
CAAACCCGTGACGTTATCAAACAACCGTTGAGGGCAGGTGCGCCATTTTGGCTCAAACAAAGTCGGAAATTATTTACTTTGCAATTTCATATTATTTGGCATGCTAATATCGCTTAATACTTTTGTGAACCTTTGGGATGATAAAATATCTTATGTGAGCTCATGGTTCAACCATGTTCTATTTAGTTTTGTTTCCTATGAGAACAAGTGTAAAGTTCTGGTAGCCTTCGCTAGCTACAAGCTAGCTCTGTTGTTTGATTGGAATGCAAGTAACTGGGGCTATAGTTcgcttgctagctagctgcatGCAGCAGTTTTGACTTGTTAGCGCGATAGGTATGGGTGGGTGTTCCGCTCCAAATTGCTCAAACTCAACAACCATTGGGAAGCAACTATTTCGTTTTCCGAAAGAGCCTATACGCAAGAATAAATGGCTTGTAAACTGCCGGCGTAATTTTGTACCAACTCCACATTCCAGACTGTGCCAGGACCATTTTGAGCTGAGTCAGTTTGAAGAAATAGCCAGGTCGCCAGCAGGGGGAAAGAAGCTGAAACCAAACGCTATCCCCACTCTTTTCAGTGTGCAAAATCCACCTTATCCCATCACCCCACAGATAGTGCTACCTTTCAAACCAGAGCCAGTAGAGAGAGATCTGAATGTGGGGGATCATGGCTATGCACGGCGGCAACCAACTCTGGGCATGGAGGAAGATGCTGATGAACTACACAAGGCAGAGGAACGTCCTTGCACCCATTGTCAACCTTACAAAACCCTGCTGGAACAAGAAATGCAACACACTGCCAGACTTCAGAAAGAGGCTGAGGAAATGAAGAAGAGGATGTTCAAACTGGACAGAATAGAGAGGGGCCTCCAGACATTTCTGTATGAAGACCAGATCcgtgccctgaccctgaccaagCGTTCCCGGAGAGCTGTGTGGTCCCACGAGACAGTGCTGAAGGCTCGTAAAATCCGATGTGCAGTCGGTGCCAAGGGTTATGAATTCCTTCGGGAGTTAGGCTACCCTTTGCCCTCTTATAGAACTTTATGCAACCGCCTGGAGGAAAAAATCATGGTGACGACAGCCATGGGCTGTGATGAGCTTGCAGAGCTTGGTCTAGGAATCATATCTACATGTGACAGTCCAGAGGGAGATGGGGACAATGAGGAGGCTTTCATTGGAGTGATGTCATGACTCATGAATGAGAGATATTTGATCAATTTGTTTGACTATGTGTTTCATTTTGAAGAATGCAAGGCAAAATGACAGGACAATATAACAGAGACTGAGGACAGCTAGTAGCCCTATGCGGTGAAGAACATGTGGAAGCATATGTACAATGGGAGATGTTAGTGTTAAAGCGTTCTTGCTTCTGGACTTGGTTTCACAtaaaaggtttttttttttttagaatggTTTACTCATGCTAAAGAATTTGGTGTTTTATTTTGGGAATGACACGTAAGCTccttcaaaacaataaagagcaGCAGTCATCTGCCTTAAAGCGGCAATcggcagtagaaacaataacaaagcggccTCCCCACCCCTGGCTCAGTAAAAAGCTGAgcgatggggctggagaaattgaATATAGATGCAAGgattgaccatccatgatatcaaaattatagttttaatcatgttttgaggctatatagtgtttgttacATTTTCTTTGtctacaaacattggagtaaaacaagcttatatttggaGTTCTAATGGGgtttgacagttgaactaagttcACGAgacataagttatattcttcaagaatcaatgagtaCACAttcaagtccaaaaatggatgtagcaactgctgattgctcCTTTAAGCTTTGAAGCTGCAATTTCAAATCACCTTTGTGCTCAATGTGAGGTCATAATTCAGAAGCTACGCTAAATAATTTGTTGTGCACCTTTTTTCTTCAGAATGTTTGACAAATGCAAAGGAAGAGCAGAATTTTTACCCCTGTTTGCAGAGTTTTTAGTTGCTCTTCATTGTCACTTATGTTAAGTGGACAAATTGGAGGATTCGTTTGTATTTTGTAATGGGAATCTGTTTAGCTGCA

Function

NR:

description
PREDICTED: THAP domain-containing protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613281.2 False 2079 mRNA 0.42 4 64341284 64344020
XM_021613280.2 True 2080 mRNA 0.42 4 64341286 64344020

Neighbor

gene id symbol gene type direction distance location
LOC110530325 LOC106569259 coding upstream 4739 64302481 ~ 64336545 (+)
ccdc24 LOC106569089 coding upstream 538721 63778335 ~ 63802563 (+)
LOC110530319 b4galt2 coding upstream 580770 63613362 ~ 63760514 (+)
atp6v0b atp6v0b coding upstream 728564 63603198 ~ 63612720 (+)
LOC118965542 NA coding upstream 779524 63559656 ~ 63570616 (+)
selenop2 LOC106569257 coding downstream 2731 64346751 ~ 64349881 (+)
elovl8a LOC106569295 coding downstream 7649 64351669 ~ 64358704 (+)
zswim5 LOC106569256 coding downstream 89085 64433105 ~ 64498150 (+)
LOC110530334 LOC106569251 coding downstream 203660 64546280 ~ 64551340 (+)
LOC118965544 NA coding downstream 254096 64598087 ~ 64599550 (+)
G734443 NA non-coding upstream 68275 64272706 ~ 64273009 (+)
G734408 NA non-coding upstream 96270 64244750 ~ 64245014 (+)
G734148 NA non-coding upstream 277093 64063988 ~ 64064191 (+)
G734143 NA non-coding upstream 286369 64054638 ~ 64054915 (+)
G734140 NA non-coding upstream 288632 64052331 ~ 64052652 (+)
G734622 NA non-coding downstream 154212 64498232 ~ 64500952 (+)
G734642 NA non-coding downstream 158326 64502346 ~ 64502780 (+)
G734627 NA non-coding downstream 167538 64511558 ~ 64565673 (+)
G734660 NA non-coding downstream 227098 64571118 ~ 64571356 (+)
G733571 LOC106569085 other upstream 792541 63547587 ~ 63548743 (+)
LOC110530316 LOC106569082 other upstream 913617 63375496 ~ 63430577 (+)
LOC118965541 LOC106569076 other upstream 1136388 63188433 ~ 63206250 (+)
G732350 NA other upstream 1458336 62797701 ~ 62882948 (+)
G732052 NA other upstream 1937093 62402949 ~ 62404191 (+)
G734690 LOC106569249 other downstream 275020 64619040 ~ 64620007 (+)
LOC110530343 LOC106569291 other downstream 353293 64697289 ~ 64698526 (+)
G735047 NA other downstream 477595 64821615 ~ 64822045 (+)
G735064 NA other downstream 486604 64830624 ~ 64830903 (+)

Expression


Co-expression Network