selenop2 (LOC106569257)


Basic Information

Item Value
gene id selenop2
gene name LOC106569257
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 64346751 ~ 64349881 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613285.2
GGCAGTGCTTACCTGAGATAAGGGCTTAAAAACAGCAGTGTAACATTGTATTGCTTAGTTGTGTGAAGCAGAAGATAGGCTCAACGAGGACAGAGGTGAGGTTTGGAGGACATGATGCAGGGTCTCTTGACTCTGTGGCTGTGTGCTGCTCTGCCAGGGCTCCTATGCGCATCGCCTCTGTTAGTAGAAGGGGACAATGATGCCTCCAAGATTTGCAAGCCTGCACCGCACTGGGAGATCAAGGGCCATGGGGCCCCCATGAAGGAGCTGCTGGGAAATGTAGTTGTTCTGGCTCTGCTGAAAGCAAGCTGACACTTCTGCCGCACACAGGCCTCCAAACTAGGAGGCCTGCGTGACAAGCTGCTCCGCAGCAACCTGACAGACGTGTCGTTCCTCATCGTGAACGAGAGGGAAGCCCAGTCCAGAGCCATGTACTGGgagctgaagaggagggcacccCCGGGCATCCCTGTCTACCAACAGGCCCCGCTACAGGACGACGTCTGGGAGGCCTTGGATGGAGACAAGGACGACTTCCTGGTATATGACAGATGTGGGAGACTGACGTTCCACATAGTCCTACCCTACAGCTTCCTCCACTACCCCTACATAGAGGCAGCCGTCAGAGCCACCTACCACAAGGACATCTGTGGCAACTGCACCgtggactccaacacAACCTCCTCAGCTGGGTGGAACAGCACCCGGAGAAACGAGACACTGAGCAGTTCAGAGATGCGTGTTAAtgagacagacagtacagtgAGGTCTATTGATGTCGATACCGTCAGCAACCCAGTTCCAAGTGATGGACCCCAGATGTCAGCTGAGGGGGGTGGTAACATGTCACACATACATCATCAGCATCATCagtacccccaccaccaccagcagcagcatcagcacCACCACAATCATGGGTCAGATGCAGATAAACAGGACTCCAATTAACATTGTCTGTGTCGTTTCTGAGATGAGTAATTGTTAattagcatggtggtggtggtggcttgtGTCAGTGACTTGACAGTCCGATAAATAGTTTTGTATGAATTAAATTAGATTTTGTCTGTGCCTGTCAATTGTGTCTGATAAGGCAAATCTGTACAGTAAACTGGAATTATTTAGGCCCTTGAAAACAGTATGTCTTCCCTACATGTGGTCTGGTGACAGGTCCTGCTCTCCTCTGCAGTTTATGAAGTCTGCAGGTCAAACTCTACGGAGGTGTCTGTAGATAGATGCTGTGCTAAGGAAAGTTGGACTGACAGTCACCGAACCCATGCAGGGCAGTGTGCTGGACTTCAGGGTAtacttgtcaacgtcttgactatatttcctattcattttgcaactttcatttcatgtatgttttcatggaaaacaaagacatttctaagggaccccaaacttttgaacggtagtgcatgATATATACGTTCCGGACTCCGACATAAGATTTACGTTCCAGGTTGCTGCTTGTTCACAATTAAAAGTATGATTATGTTGTTGTATGAATGTAATCAAAATCATTTCAA
>XM_021613286.2
CTTAAAAACAGCAGTGTAACATTGTATTGCTTAGTTGTGTGAAGCAGAAGATAGGCTCAACGAGGACAGAGGTCAGTCCAGGTGAGGTTTGGAGGACATGATGCAGGGTCTCTTGACTCTGTGGCTGTGTGCTGCTCTGCCAGGGCTCCTATGCGCATCGCCTCTGTTAGTAGAAGGGGACAATGATGCCTCCAAGATTTGCAAGCCTGCACCGCACTGGGAGATCAAGGGCCATGGGGCCCCCATGAAGGAGCTGCTGGGAAATGTAGTTGTTCTGGCTCTGCTGAAAGCAAGCTGACACTTCTGCCGCACACAGGCCTCCAAACTAGGAGGCCTGCGTGACAAGCTGCTCCGCAGCAACCTGACAGACGTGTCGTTCCTCATCGTGAACGAGAGGGAAGCCCAGTCCAGAGCCATGTACTGGgagctgaagaggagggcacccCCGGGCATCCCTGTCTACCAACAGGCCCCGCTACAGGACGACGTCTGGGAGGCCTTGGATGGAGACAAGGACGACTTCCTGGTATATGACAGATGTGGGAGACTGACGTTCCACATAGTCCTACCCTACAGCTTCCTCCACTACCCCTACATAGAGGCAGCCGTCAGAGCCACCTACCACAAGGACATCTGTGGCAACTGCACCgtggactccaacacAACCTCCTCAGCTGGGTGGAACAGCACCCGGAGAAACGAGACACTGAGCAGTTCAGAGATGCGTGTTAAtgagacagacagtacagtgAGGTCTATTGATGTCGATACCGTCAGCAACCCAGTTCCAAGTGATGGACCCCAGATGTCAGCTGAGGGGGGTGGTAACATGTCACACATACATCATCAGCATCATCagtacccccaccaccaccagcagcagcatcagcacCACCACAATCATGGGTCAGATGCAGATAAACAGGACTCCAATTAACATTGTCTGTGTCGTTTCTGAGATGAGTAATTGTTAattagcatggtggtggtggtggcttgtGTCAGTGACTTGACAGTCCGATAAATAGTTTTGTATGAATTAAATTAGATTTTGTCTGTGCCTGTCAATTGTGTCTGATAAGGCAAATCTGTACAGTAAACTGGAATTATTTAGGCCCTTGAAAACAGTATGTCTTCCCTACATGTGGTCTGGTGACAGGTCCTGCTCTCCTCTGCAGTTTATGAAGTCTGCAGGTCAAACTCTACGGAGGTGTCTGTAGATAGATGCTGTGCTAAGGAAAGTTGGACTGACAGTCACCGAACCCATGCAGGGCAGTGTGCTGGACTTCAGGGTAtacttgtcaacgtcttgactatatttcctattcattttgcaactttcatttcatgtatgttttcatggaaaacaaagacatttctaagggaccccaaacttttgaacggtagtgcatgATATATACGTTCCGGACTCCGACATAAGATTTACGTTCCAGGTTGCTGCTTGTTCACAATTAAAAGTATGATTATGTTGTTGTATGAATGTAATCAAAATCATTTCAA

Function

NR:

description
selenoprotein Pb-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613285.2 False 1535 mRNA 0.49 5 64346751 64349881
XM_021613286.2 True 1521 mRNA 0.49 5 64346775 64349881

Neighbor

gene id symbol gene type direction distance location
LOC110530327 LOC106569258 coding upstream 2731 64341284 ~ 64344020 (+)
LOC110530325 LOC106569259 coding upstream 10206 64302481 ~ 64336545 (+)
ccdc24 LOC106569089 coding upstream 544188 63778335 ~ 63802563 (+)
LOC110530319 b4galt2 coding upstream 586237 63613362 ~ 63760514 (+)
atp6v0b atp6v0b coding upstream 734031 63603198 ~ 63612720 (+)
elovl8a LOC106569295 coding downstream 1788 64351669 ~ 64358704 (+)
zswim5 LOC106569256 coding downstream 83224 64433105 ~ 64498150 (+)
LOC110530334 LOC106569251 coding downstream 197799 64546280 ~ 64551340 (+)
LOC118965544 NA coding downstream 248235 64598087 ~ 64599550 (+)
buc LOC106569294 coding downstream 291240 64641121 ~ 64644702 (+)
G734443 NA non-coding upstream 73742 64272706 ~ 64273009 (+)
G734408 NA non-coding upstream 101737 64244750 ~ 64245014 (+)
G734148 NA non-coding upstream 282560 64063988 ~ 64064191 (+)
G734143 NA non-coding upstream 291836 64054638 ~ 64054915 (+)
G734140 NA non-coding upstream 294099 64052331 ~ 64052652 (+)
G734622 NA non-coding downstream 148351 64498232 ~ 64500952 (+)
G734642 NA non-coding downstream 152465 64502346 ~ 64502780 (+)
G734627 NA non-coding downstream 161677 64511558 ~ 64565673 (+)
G734660 NA non-coding downstream 221237 64571118 ~ 64571356 (+)
G733571 LOC106569085 other upstream 798008 63547587 ~ 63548743 (+)
LOC110530316 LOC106569082 other upstream 919084 63375496 ~ 63430577 (+)
LOC118965541 LOC106569076 other upstream 1141855 63188433 ~ 63206250 (+)
G732350 NA other upstream 1463803 62797701 ~ 62882948 (+)
G732052 NA other upstream 1942560 62402949 ~ 62404191 (+)
G734690 LOC106569249 other downstream 269159 64619040 ~ 64620007 (+)
LOC110530343 LOC106569291 other downstream 347432 64697289 ~ 64698526 (+)
G735047 NA other downstream 471734 64821615 ~ 64822045 (+)
G735064 NA other downstream 480743 64830624 ~ 64830903 (+)

Expression


Co-expression Network