XLOC_025858 (pecam1)


Basic Information

Item Value
gene id XLOC_025858
gene name pecam1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 59784632 ~ 59822428 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050725
CCGCGTGTGTGTTCAGCGAGCGTTCAGAATCTGCGTCACGTTCACCTGTGAGGATGGGAGCGGGTCTGCTGTGGCTCGGCCTGGCCGGACTGTGGCAAGCGCTCGGCACGCGGGCAGCGATCACCATCGATCAGGTGAGGCTGACTGTTCATCCAGGTAATGAAGTGGTCAGTGGCACTAATCTGATCCTGCGCTGTGAGGCTGATGTCAGTCACAGCCTGTCCCGTCCACCCACGCACTCCTTCAGCTTCCTGCATAACGGACAGGTGGTCTACTCCAAAAACATCAGCGCCTCTGTGGTGGAGCGCACCTTCTCTCCGGCCCGCGTCTCCAACTCAGGCCAGTATGAATGCACTGTCCGCATTGAAGACAAGGCCAAGACAAGTAACAGGCAGACACTGCGCATCACAGGCCTTCAGACGCCCACGATGAAGGTGAAGTCTGACATCGTGTCTGAGGGGGAAGACATCATTGCCACATGCAGCGCAGCAGAGGAGACGGGCACGCTGATGTTTCTCTTCTACGAGGACAATCAGGAGGTCAAGAGTGAAGTTAGTAACACCAACACCATTTCGATCACGCTGACCATGAAGAAGCTCACTGATATCTATCTGCACTGCGCCTACATGGTTGTAAGGCACCCCACTGCAGGCTTCTCCAACAACAGCAACACCGTCAAAGTCTTTGTACGAGATCTTAAAGAGCTCATCCCACAGATAAGCTTTTCACCCAGTGCGAGTGTGGTCGAGGGCGAACGGGTGGCGATCAAATGTGAGGTTCAGGATCGCTCAGCTCTGGAGATGTTTCTCACCAAAGACGGCACCATACTTCACAGATTTCACACATCCTTTACATACAGCCTCACGGTGAGAGAGGAGGATTCTGGAGATTATGTGTGCAAAACCGAGAAAGGGAGCGTGCAGAAGAAGGTAGAAAATCGACTCAGTGTAACAGCACTGTTTACAAGGCCAATCTTGACAATGAGCCCATATGAGGTTTTTGAAGGGGAATTCTTCAAGCTGAACTGCAGCAGTTCAGTGATCTCAAACAAGATCAGCAAAGAAGACATCAAGTATGTTTTGCTTAAAGATGGTCAACGCATTTCTACAAATCCCATCTTTCGCAAATCTGCAAGCCTGGTCAACAATGGCAAATATTCTTGTTGGGCCATGGCTAGAGGTGTTAACAAGACCAGCCTGCCACACCTTTTAAAAGCTAAAGTGCCTGTTTCAGTGCCAGTCTTGAGTGCTGTTGGTAAAGTGATTGTTGGTCGACCTTTCAAGGTTTTGTGTGAGGCTAAGAACGGAACGCTTCCAATAACCTACACCTTACTGAAGGACCATACTCCAGTGGATAGCAGAGTTGTCAATGGAACTGAAAGAGCGATCTTTACCATCACCTCCATCAGATTTCCAGGAGAGATCGACAGCTTCACGTGTCAGGCTTATAACGGACCAAGGTTCATTAGGACCAGCGACGCTTTAACAGCACCAGTCATAGTTCCAGTCTCGGAGCCCATGCTGAAGCCCCAGGAGACGACGGTGACCGAGGGCTCGGATCTGGTCCTCACCTGCAGTGTCCAGGAGGGCTCTTACCCAATCACCTTTACCTGGTACCATAACAAGCTTCTTCTGCTCTACTCCAGACAAGAGGTCCAATCCTCAAAAGGAAGTCACATCGTTAAAATGATCACGCGAGACCAAAGAGGAGACTACCACTGCGAGGCGTCCAATCAAGCCCTTGAAACCAAGCAGAGTAAACCGGCAAGAATTGGAGTCAGTTTAGCGCTGTGGAAGAAGGCTCTTATCGGAGTCCTCTGTATCCTGCTGTTGGTGGCGATTGTCGTAGTCCTGACAGTCTTTTTTAAGAAAACGTCACATCCGCGCAGAAAAAGGCAAGCGACCGAGCTATCAGTaaaaCCTTCAAGACCCAAATCAGGAGACCCCATGAGAATGAGCCTCACACTCGATATTGAAGACAACACCGTCCTCAATGGAACTCCCTGTGTGATGGGCAGGAATGTGTGGAGCGAAAATGCATCTGGTTCAGATTCTGACGATCACACCGATGAGGAGTCTGAGCTGGTTCAACCAGAGCAGGCAGATCCCAGCAGAGaaaTTCCCATGCCGAAAAACGCGGAGGATGAATACATCATCCAGCACACAGAAGTCCAGGTGTCGACACCAGgagTTCCGGAGCAGGCAGAGGGCCAGGCGGCTCTGGAGTATGTGCAACTCAACAACAGTGAACAGGAGACCCATGACACATAATTTATTCAGCTTTTCCACCGACTGAAGCTGATTTTCCGTTACCAAGCTCATGCTGAACATTTTTCATATTggattgtttgctgttttgtgatGATTGTGTGTCTAGATTAAAATCTGAGCATCAGATCAAGTCTTTTGTGGTTCTGCTTTGTTTTTTCCTTATTGGCGTTGTTTTTCTAAGGACTGCGAGGAACAGGAAAGACATCTCTTCTTTCAGGGTGTCACTGAGCCGCTGGAAAAAGGAAGTCTTTAAAACATAAGCCGTTCAAAAATGTCCTTTTAGGATCTGAAGCCTCTGCATATCTGTTTGAAATGTCCTTAGGAAAAGCTGCTGTAACATTATTGCAAGAATATCTGATGAGTTTAAAAACCTttcgaattttttttttaaggtttttattttttaaggttttgaACTGCGCTGATTAATGTTGTAAACATTCTGAGACTGAAATGTGAATGCTGTCATTAAAAGTAccagcataggctcattctgaaactgtacctctatatacatttctggagatcgtgaattaagTAGCTAGAAGCTGTATTTCGCCTTTAGGTCAAACGTTACAGGACAGTATGCACGCTTGCCTCCATATgaatggcttttccactgttacctgTTACAAATTGACGTGACGTGCCGTTGACAGTTATGACGGGTTTTGAGTCCAGCGAAGAACAGTCGCAAGAAGCAGGTAAGCCAAaagccaaaacataaaatagacCAGTAAATAGAGCTtttgattgcttttgaaaacactatcagttgggtttagggaaggaggacggtgggtcagttgatcagtcagtcagtcagtcgacagcggcctctggtgaatttatgcaagaagagcagAAATTTgtgatctcaaaaagcgtacacagcagcctctggtggatgctcctgggatgtatttggcgctctccagaaatgtatataagggtacgtAATTAAAATGAACCTGGGTTGCAAAGAACAAGGCATTTTTtatggtacactctcagaaataaaggtaagacTTGTCACTGGGGTAATACCTTTTTGAAAGGTAAACacttgtacctaaaaggtccatattaataccctTAGGGTACATAATTgtacctaaaatgtacaaaagtgttcctcttaatatttttaggtactaatatatacttttaaggtaccaatatggactttTCAagaacaaatgtgtaccttttgaaaaggtaccaccaaaGTGACaacttgcgtacctttatttctgagagtgtatacagGTTCTGTTTTAGGACCTCTGCTCTTTTAATTATACTATAAATGTTACCTTTCGGTTGTTTgatctaaatagttttttttatgtttttaaaggtttttaattttgacatttttgaactgtaatgctgcgttcacaccagacgcggcatgtgcgcgagtgatttacatgttaagtcaatgcaaacgcgcgaatagacatcctgtggcgcgatacgcacgaatgacgagaattgcgcggtgcgcatggcgcgaattgagcgttttgcgcgtttgatgcgCTTAATGCGCGTTTCGCTCGAATCACTcgcgttcgaaaatctgaacttcagcggacattcgcgccgcgttaaccaatcaggagcttgctcttgtgggggagtgattgtgacgtatcgcttgttgtcggtgtcccaggggaaatcccccagcagacaccgacaagaagttcatcaaactgggcttggctcagtcagaagcaccgctgaaaacctccatcagccaggttcagtttctggaggagtttatgagctcacagagctggatgcacctctgaaaggatgtagtggactcaaacACAactctaaacgtatcgacgctgtttatcatccttcataaagcacataaacactgttattttcttcataaaatccatgttagccctttagctatgaagctagagtcatggggcagacagaagccctgcccatcacgcgaatccgcgtctgttttgtagtgaatttgacgcgcgaatgaagcaagtaacctcaaatgtttacGTGACTAATTACGCGCGAATAACGCGATTTATccgtgcgttccgcgtctggtgtgaacacagcataaagtTTAATGTTGTATAAACAACCTGAGACTGAAATGCTGAACTTCaggattcattttatttaaagtctattcattattttttgtccTTTTACTTTGATGTTTGTTCTGTTGTGAGGAACACATTAAACCAACTAGCTCACCCACATCTCGATGCCGACTGTCCTGGCTTTAACCTGCAAATCCTTCAACACAGGACCACTTGGGGAAAAGCAATTATTCTAAAGCAGAGCCCCTCAAAAAGTGCCCATCAACACATTTCAGAACTAAAAGCCGCTGATAACTTTTTGGTATAGTAGTTTAATGTAGTTTAAGAAATATTCAAGAAGAGGTTGAACGATTTTGATCAGCTTTTCTTGTCATAAACCCAAAAATCCACTCATTTCTGTGGCAGAATGTGATTTTTTCTTACTTGGTGTACACCATGGTTCTGTTTTAGGACCTCAGCtatttttcagtcattcattcattcattttcttctcggcttagtccctttattaatctggggttgccacagcagaataaaccgccaacttatccagcatatattttatgcatcggatgcccttccagctgcaacccatctctgggaaacatccatacacactcattcagactattacattacagacaatttagcctacccaattcacctctaccacgTCTTTTGACTggagaagaaacccacacgaacgcaggaagaacatgcaaactccacacagaaacgccaactgactcagccgaggctcaaaccagtggccttcttgctgtgagccaacagcactatctactgcgccaccgcgtcgcacCTCTGCTATTTTTACTTTAATATGATGTTTTTAAGACTGAAGTGTTGGATAATAATGTTTTACTTCTCTATTTACTCTAGTTGTTCAATTCGGCAAtatattatgaattaaatatttcattttccaAAATTATTACATGCACGTTGTCATTGGGGTCCTTCTCTAGATTTTTG

Function

symbol description
pecam1 Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in cell surface receptor signaling pathway and cell-cell adhesion via plasma-membrane adhesion molecules. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in coronary artery disease; coronary stenosis; myocardial infarction; neuroblastoma; and psoriatic arthritis. Orthologous to human PECAM1 (platelet and endothelial cell adhesion molecule 1).

GO:

id name namespace
GO:0098742 cell-cell adhesion via plasma-membrane adhesion molecules biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function

KEGG:

id description
ko04514 Cell adhesion molecules
ko04670 Leukocyte transendothelial migration
ko05144 Malaria
ko05418 Fluid shear stress and atherosclerosis
ko04090 CD molecules
ko00536 Glycosaminoglycan binding proteins
ko04091 Lectins

ZFIN:

id description
ZDB-GENE-130530-689 Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in cell surface receptor signaling pathway and cell-cell adhesion via plasma-membrane adhesion molecules. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in coronary artery disease; coronary stenosis; myocardial infarction; neuroblastoma; and psoriatic arthritis. Orthologous to human PECAM1 (platelet and endothelial cell adhesion molecule 1).

Ensembl:

ensembl_id ENSDARG00000060263

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050725 True 5360 mRNA 0.45 15 59784632 59822428

Neighbor

gene id symbol gene type direction distance location
XLOC_025856 NA coding upstream 560436 59212160 ~ 59224196 (+)
XLOC_025855 MGAT5B coding upstream 616808 59117136 ~ 59167824 (+)
XLOC_025854 rasd4 coding upstream 731638 59051503 ~ 59052994 (+)
XLOC_025853 NA coding upstream 756795 59024934 ~ 59027837 (+)
XLOC_025852 CABZ01044156.1 coding upstream 794816 58984463 ~ 58989816 (+)
XLOC_025859 CU693479.1 coding downstream 29109 59851537 ~ 59862797 (+)
XLOC_025860 mcrip1 coding downstream 42444 59864872 ~ 59876861 (+)
XLOC_025861 alyref coding downstream 57889 59880317 ~ 59891841 (+)
XLOC_025862 arhgdia coding downstream 77024 59899452 ~ 59947208 (+)
XLOC_025863 si:ch211-110e21.3 coding downstream 185275 60007703 ~ 60016714 (+)
XLOC_025429 BX649540.1 misc upstream 29535596 30248739 ~ 30249036 (+)
XLOC_025851 CABZ01044154.1 non-coding upstream 817535 58961904 ~ 58967097 (+)
XLOC_025850 NA non-coding upstream 927149 58835461 ~ 58857483 (+)
XLOC_025848 NA non-coding upstream 972799 58806215 ~ 58811833 (+)
XLOC_025865 NA non-coding downstream 215122 60037550 ~ 60043897 (+)
XLOC_025868 NA non-coding downstream 243960 60066388 ~ 60067768 (+)
XLOC_025870 NA non-coding downstream 533786 60356214 ~ 60357972 (+)
XLOC_025871 NA non-coding downstream 560694 60383122 ~ 60401867 (+)
XLOC_025872 NA non-coding downstream 565821 60388249 ~ 60388895 (+)

Expression


Co-expression Network