cdh12a (LOC106569243)


Basic Information

Item Value
gene id cdh12a
gene name LOC106569243
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 64960058 ~ 64994487 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613322.2
cagagagagtgggagagatagagacagagagaaaatgtgTTTGAAGGGCTGTAAGTCTGAGTGTGTTCTTCGCTCGCAAGGGAGTTTCATCGCTTTTACCATCAGATGTGTGGATTAATTTGGTCTAACCCCACCAGCCTGGGAGCCTGACGAGAGACAGTTAAGGAGACCTAGGTAATGAGGACTAGTTGAGTGAGATGCCAAACATCCTGGAGACCAATCTACCCATGTCACCACAACATCCTCCCGTCCCTTTCTTCATTGGATCTGCAACCCAGCTTCTATTGTCTCACTGACAGTCTCTCATTGGAATTCAACAGAGATACTCCACTGCCCAGATTGCCAATGATTACAAGGAACGGTCTGCTGTTGGTCTTTTGGTTTCTCTTGGACAAAGGTTTCCTGGCTCCCCTCCACGCTCCACCCCAAAGCAGGATGGGAAGAGAGCAACACCTGAGGGGTGTGGAAGGACTGGGACTGAGGAGACATGTGGCGTCAGGGGTtcagagggtgaagagaggatgGGTGTGGAACCAGTTCTTTGTACTGGAGGAATATATGGGATCGGAACCACAATATGTTGGAAAGCTTCACACTGACCTGGACAGGGGCGACAGCGACGTGAAGTACACTCTATCAGGAGAAGGAGTCGGAACCATCTTCACCATAGACCAGACGACAGGTGACATCCATGCCTTGATGGGTTTGGACCGAGAGGTGAAATCTTACTACACGTTACGAGCCCAGGCTGTGGACATGAACACAGGCAGGCCTCTGGAGCCTGAGTCTGAATTCATCATAAAAATTCAAGACGTCAATGACAATGAACCAAAGTTCTTGGACGGCCCATACACAGCCAGTGTCCCAGAGATGTCACCAGGGGGTACTTTTGTTATGCAGGTGACTGCCACAGATGCTGACGACCCCTCCTATGGGAATAGTGCACGGATcgtctacagtatcctacatgGACAGCCTTACTTTTCAGTCGACTCCAAAACTGGGGTTATTAGAACTGCGTTGCCTAACATGGACCGTGAAGTGAAGGAGCTTTACCAGGTCCTTATTCAGGCAAAGGATATGGGCGGTCAGCTGGGAGGACTAGCCGgaaccaccaccatcaacatcacCCTCAGCGACGTCAACGACAACCCACCCAGGTTTTCAAAAAGTATATTCCACCTCAGGATCCCAGAGTCTTCGTTAGTGGGCTCAGCAGTGGGGAAGATCAGAGCTCATGACCTGGACTCTGAGAAGAATGCAGAGGTGGAATATTCTATCGTTCCTGGAGATGAAGGACACGTGTTTAACATCACCTCCAACGGGCACAGTCAAGAGGGAATCATAGTCCTAAGTGAGCATCTCGACTACGAAACCAAAAGATCATACACCTTTAAAGTGGAGGCCTCCAACGCTCACCTGGATCCCCGGTTCCTGCACCGGGGCCCCTTCAAAGACACTGCCACCGTGAAGGTCAACGTGCTGGATGTGGATGAACCCCCTGTGTTCACTAAGACCTCTTACACCATAGATGTGTATGAGGACACTCCTGTGAGCACCATCATTGGATCTGTTACAGCGCAGGACCTAGATGCAAGTACCAGCTCAGTTAGATACTCTATTGAGTGGAAGAGGCCTGTGGACGGCTGCTTTGACATTGATACTGTGGAAGGGACCATCTCCACCACCGAGATGTTGGACAGAGAGAGTAATAGGCAGCACAATATCTTTGTTGTGGCCACTAAAGTTAACAACCCTCTCCTATCCAACAAGGTCACAGTCACAGTCAATGTGCTGGATGTCAACGAGTTCCCTCCGGAGCTCACCATTCTCTTTGACACGTTTGTCTGTGAAAATGCAAAAGTAGGCCAGGTAATTCAGACCATCAATGCTACGGACAAGGATCTTCCCACTGTTGGACAGAAGTTCTACTTCAAGTCCCCCAGGGAAATCAGAAACAGGAATTTCACTGTGCGAGACTTTGGAAACAACACAGCGGGGATAGTGACCAAGCGTGTGGGGTTCCAGAGGCGGGTCCAGGAGTACTACGTGGTGCCTGTGGTGGTGGAGGACAGTGGCTACCCAGCCCAGAGCAGCACCGGCACCCTCACTGTCCGCGTGTGTGCCTGTGAGACCGACGGTTCCCTCCTGTCCTGCACGGCAGAAGCAGTCTTTCTACCAGTGGGTCTCAGCACCGGGGCAGTGATGGCCATTTTACTGTGCATGGTCATACTCCTGGTGATCGTGGTGCTCTACGTAGGCCTGAGACGGCAGAAGAAGAGGGAGACATTGATGTCGTCCAAGGAGGACATCCGGGACAACGTGGTTCACTATGACGTCGAGGGGGGCGGCGAGGAGGACACTCACGCCTTCGACATGGGCACGCTGAGGAACACCAAGGCCATAAAGGAGAACATGCTCCGCCGGGGCACAGGGTCATGGTCAGATGTCACCACTCAAACTGAGATCAATGGGTCAACCCCTACCACAGAAGGCAGCACTAACATCATCAGGGACTATATTCACCAGCGTCTCCAGGAGAACCACCTGGGTTTCTCTGCTCCCCCGTATGACTCGCTGGCTACATACGCCTATGAGGGGGATGGGTCAGTGGCAGAGTCGCTGAGCTCCATCGAGTCGTGGACGGTGGACGGCTGTGAGGACTTCAGATACCTCAGCGAGTGGGGGCCATCCTTCAAAACTCTGGTGGGGATATTAGACAAAGACAAAGCAGATCCTCCCACTGCGGAAGTGGAGGAGAGTTGAGAGTACTTGTTAAGACAGAATTGACAGAAAATACTATTTGATTTGCAAAAGTTGTTTTACTTTTATAGTACTTTTATAGACAATGGGAATAAAATACAAGCCGTTCACTTAAGTTCTTATCATAGTTTTGTGgtggttgttattgttgtttgttttttggtTAAAATAAACTTGACAAGCTATCAAAGTG
>TU834855
TATTGGAGAACcttggaaagagagggagaatgaaagagagagggaaggagagaggggtagagtgaaaaagagagactgaaaaagagagggagaaaagagaggttgagggaaagagagagagcaggacagagagagtgggagagatagagacagagagaaaatgtgTTTGAAGGGCTGTAAGTCTGAGTGTGTTCTTCGCTCGCAAGGGAGTTTCATCGCTTTTACCATCAGATGTGTGGATTAATTTGGTCTAACCCCACCAGCCTGGGAGCCTGACGAGAGACAGTTAAGGTT

Function

NR:

description
PREDICTED: cadherin-12-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613322.2 False 2956 mRNA 0.50 12 64960184 64994487
TU834855 True 294 lncRNA 0.47 1 64960058 64960351

Neighbor

gene id symbol gene type direction distance location
LOC110530343 LOC106569291 coding upstream 261658 64697289 ~ 64698526 (+)
LOC110530342 LOC106569247 coding upstream 292230 64666444 ~ 64667954 (+)
LOC110530338 LOC106569292 coding upstream 306712 64649558 ~ 64653472 (+)
buc LOC106569294 coding upstream 315482 64641121 ~ 64644702 (+)
LOC118965544 NA coding upstream 360634 64598087 ~ 64599550 (+)
cdh18a LOC106569242 coding downstream 13400 65007887 ~ 65086822 (+)
dlgap1a LOC106569241 coding downstream 147728 65142215 ~ 65253973 (+)
LOC110529128 LOC106569290 coding downstream 267149 65261636 ~ 65262921 (+)
si:ch211-207d6.2 kiaa1217 coding downstream 306508 65300995 ~ 65386540 (+)
LOC110530354 LOC106569236 coding downstream 421789 65416276 ~ 65421979 (+)
G735230 NA non-coding upstream 13128 64946856 ~ 64947056 (+)
G735164 NA non-coding upstream 68951 64890949 ~ 64891233 (+)
G735046 NA non-coding upstream 139601 64820295 ~ 64820583 (+)
G734805 NA non-coding upstream 161601 64798364 ~ 64798583 (+)
G734781 LOC106569244 non-coding upstream 199521 64758513 ~ 64760663 (+)
G735303 LOC100135827 non-coding downstream 63671 65058158 ~ 65142590 (+)
G735431 cssa14h10orf67 non-coding downstream 275588 65270075 ~ 65275313 (+)
G735498 NA non-coding downstream 383282 65377769 ~ 65378118 (+)
G735499 NA non-coding downstream 395114 65389601 ~ 65390041 (+)
G735530 NA non-coding downstream 433725 65428212 ~ 65433525 (+)
G735064 NA other upstream 129281 64830624 ~ 64830903 (+)
G735047 NA other upstream 138139 64821615 ~ 64822045 (+)
G734690 LOC106569249 other upstream 340177 64619040 ~ 64620007 (+)
LOC110530334 LOC106569251 other upstream 409044 64546280 ~ 64551340 (+)
G735512 NA other downstream 407736 65402223 ~ 65403099 (+)
LOC110530360 tmm70 other downstream 604898 65599331 ~ 65602141 (+)
LOC110530364 LOC106569228 other downstream 672379 65659289 ~ 65670369 (+)
si:ch211-106n13.3 LOC106569214 other downstream 1129721 66100360 ~ 66125932 (+)
G735242 NA non-coding downstream 1644 64961995 ~ 64962220 (+)
G735243 NA non-coding downstream 1948 64962299 ~ 64962601 (+)

Expression


Co-expression Network