LOC110529128 (LOC106569290)


Basic Information

Item Value
gene id LOC110529128
gene name LOC106569290
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 65261636 ~ 65262921 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611267.2
GCCTTCAACTGAACTATCTCTTGAGCATCCAGAGGCAGCGCAAAGATCAAATTTGTTGTTACTGGGCAACAAGAAAACAACAGCAAAAAAATGGACACTGTCTTAGATACATTTACAGGATTGGACTCCTTCTCTTCCCCTTATTTTGACGAGGATGATTTCTTTACTGACCAGTCCTCCAGGGACCACTTGGACACCGACGAGTTTCTAGATGACGATGTCGATTTTCTCACCAGCCATTTCCAAGATTACTACAAGGACAGCAGGTTAGCGCACGATGGGGACTACTGTGAAATTGGCAacttttccttctcttcctcctcctctaccttctcgTATGAATGCACTGACAGCACCTCAGAGCTGTCGCCTCAGATGGGAGGAGATGTCCCGATGCTAAAAAGGCGGAGGCGGATGAGATCCGATATGGAGATGCAACATTTACGGCAGGCTGCCAACGTCCGGGAGCGGCGGAGGATGCAGTCCATTAACGATGCTTTCGAAGGACTCCGGTCTCACATCCCCACTCTGCCATACGAGAAGAGGCTCTCCAAAGTCGATACCCTGCGCCTGGCCATTGGCTACATCAACTTCCTCGCTGAGCTCGTACAGTCGGACATGCCCATCCGAAACTCCGACAGTGAAGCACCGACTCAACCCAAAAAAGTTATAATTTGCCACAGAGGAACAAGATCTCCGTCTCCAAGTGACCCTGACTACGGGTTGCCTCCCCTTGCCGGCCACTCTCTGTCCTGGACAGACGAGAAACAGCTGAAAGACCAGAACATCATTAGAACCGCTAAAGTTTGGACACCCGAGGACCCACGAAAACTGCACATGAAACCCTCCCTGAACAACATTGAAAACGAGCCTCCTTTCAGCTTAACCTGAGCCCAATAAATGTTATGTTTATGTCTAAAAGAACGTATTGTTATACACACATTGTAAATCCATGTTAATATATAACGTTGTCTTTAGCGTTGATTATTTAcgtgtaaatatatatttgtcaATGTTCTCCTAATTAAGGCAGCTGGGCAATCATTTTATATGTagcaaaatgtatttaattgttttCATGATAATATATGTTTTAATTTAACATTGATGAATATACGAAAACCAAACTATttttataatacattttaaaataatttatATTTATATGCAATCTGAGAA

Function

NR:

description
PREDICTED: pancreas transcription factor 1 subunit alpha

GO:

id name namespace
GO:0031017 exocrine pancreas development biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0048384 retinoic acid receptor signaling pathway biological_process
GO:0030902 hindbrain development biological_process
GO:0048699 generation of neurons biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09073 PTF1A; pancreas-specific transcription factor 1a

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611267.2 True 1179 mRNA 0.44 2 65261636 65262921

Neighbor

gene id symbol gene type direction distance location
dlgap1a LOC106569241 coding upstream 7663 65142215 ~ 65253973 (+)
cdh18a LOC106569242 coding upstream 174814 65007887 ~ 65086822 (+)
cdh12a LOC106569243 coding upstream 267149 64960058 ~ 64994487 (+)
LOC110530343 LOC106569291 coding upstream 563110 64697289 ~ 64698526 (+)
LOC110530342 LOC106569247 coding upstream 593682 64666444 ~ 64667954 (+)
si:ch211-207d6.2 kiaa1217 coding downstream 38074 65300995 ~ 65386540 (+)
LOC110530354 LOC106569236 coding downstream 153355 65416276 ~ 65421979 (+)
LOC110530357 LOC106569232 coding downstream 248542 65511463 ~ 65520143 (+)
LOC110530359 LOC106569230 coding downstream 298772 65561693 ~ 65587630 (+)
LOC110530360 tmm70 coding downstream 336410 65599331 ~ 65602141 (+)
G735303 LOC100135827 non-coding upstream 119046 65058158 ~ 65142590 (+)
G735243 NA non-coding upstream 299035 64962299 ~ 64962601 (+)
G735242 NA non-coding upstream 299416 64961995 ~ 64962220 (+)
G735230 NA non-coding upstream 314580 64946856 ~ 64947056 (+)
G735431 cssa14h10orf67 non-coding downstream 7154 65270075 ~ 65275313 (+)
G735498 NA non-coding downstream 114848 65377769 ~ 65378118 (+)
G735499 NA non-coding downstream 126680 65389601 ~ 65390041 (+)
G735530 NA non-coding downstream 165291 65428212 ~ 65433525 (+)
G735537 NA non-coding downstream 176177 65439098 ~ 65442283 (+)
G735064 NA other upstream 430733 64830624 ~ 64830903 (+)
G735047 NA other upstream 439591 64821615 ~ 64822045 (+)
G734690 LOC106569249 other upstream 641629 64619040 ~ 64620007 (+)
LOC110530334 LOC106569251 other upstream 710496 64546280 ~ 64551340 (+)
G735512 NA other downstream 139302 65402223 ~ 65403099 (+)
LOC110530364 LOC106569228 other downstream 403945 65659289 ~ 65670369 (+)
si:ch211-106n13.3 LOC106569214 other downstream 861287 66100360 ~ 66125932 (+)

Expression


Co-expression Network