LOC110530354 (LOC106569236)


Basic Information

Item Value
gene id LOC110530354
gene name LOC106569236
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 65416276 ~ 65421979 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613339.2
CAGGAGCAGTTAGCGCCTCTTTATCTACTCGTAGTTTAGTAGTTGAAGCATCAAGATTGGATTGGTTCTGAAAGGGGACTACTACTACTCAGTATTTTAAATGGTAGTCTACTTTCTCAACAAATAGATTGATCGCAGCAAGCCGGAAAAATACATTTGAAGTATGTTTTTTCTTTGTGAAAAAGGCAAGAGGCGTGGTTTTATTACTACCAAAACTAGATactgaaaaaaaaaaaggatttCGTTTTTATTTCCAATTACATTGTATTTAAAAAACGTAGTGGACAAGGAAAGCTAAAACATTCATTCATTGGAATTCATAATTTTGTGTGGGAGAGTGAGAAAGGTAGGCTACCAGAATTGGACATAGAGTATTTCACCATGGAAGAAGATGATAATCGCAATGGAGAGCGTCAAGATTCGGGCGAAGAATTCAACAGAGCTATTCTTCCTCTTCTTCAAGCACCTGGGAACCAGCAACCGCACCGAATCACGAACTTTTACATTGATAATATTTTGAGACCAGACTTTGGACGGCGGAAAGACGGGACTTTTAATTATGATGAGAATCACCTCAATAGACGAGAGAATAGTCCGCGCCTTCCCCCAAAATCTGGGCAGTTAGGTGGGACCGTGGCAGGGGAAGGAACATCGAATTCTCGTTCAGTCGGTGAGCCAAAAAAAGATATTGTTGGAGATGCGCCTCTCAAGTCCCGAGGAGAAATTGGAGATCAGTGCCTAAGCTCCGACTCGGATAGTTCTCAAGCCATTTCTGCACCTTCGTCGAAACCTATGCTCTGGCCAGCCTGGGTGTATTGTACAAGATATTCAGACCGGCCATCCTCAGGGCCAAGATCTCGTAAACCAAAGAAGTCGACCACTACCACGACAACGACGACGACCCCAAGCAAGGATGACAAGCGTCCAAGAACGGCCTTTACAGCAGAACAACTCCAGAGACTAAAAACGGAGTTTCAGACCAGTCGGTACCTGACTGAACAGAGAAGACAGAGTCTGGCACAAGAACTCGGCCTCAACGAATCTCAAATTAAAATCTGGTTTCAAAACAAGAGGGCTAAAATAAAGAAGGCTACCGGGAATAAAAACTCTTTAGCCTTGCACCTGATGGCACAGGGACTATACAATCATGCCACATCATCTAAGGATGAAAAATCAGACAGCGATTGAAGAAAAGATACAAAGCAATAAATAACTTTAAAGGGCCAGTGTACAAAAACACCAGCAAATATTTAAAACATGAATGAGACAGGATTTTGCAATATTCTGTAGGTAtagttgttttttaaaattgttttttaaactttgctaggtattattactgcactgttggagctagaaacaccagcatttcgCTGCACATGTGATAGCATCTGCAAATcagtgtatgcgaccaatacactttgatttggtTTAAACCATTTTGTGTTATAAAACTTTTGCCATGTTCTCCCTGGAACTTTAGAATTGCTTCAGCATcaaagtttgttttgtttttgttttgtttttaacaaGTTTTGTTTTTATCACATTTGACCGAAATAATGGAAACATGCTGATGTCCAAAGATTTGTTCTGCTGCATTTTGGAAACTGTGAATTTTAAATAGCCTAAATAGTGTTTATCTATGTTTTTACGTTTTTTTATCACACTGTTTCCTTGTACTTTGATGTTCATGTTGAAGATATGTTTTCTGAGGCTCCTTTGTTTTGTGTAAAAATACAGCCTGTCTGAGTTGATATGGAGGGAACCATATGCATTAAATGATGCGTATTATCTGATAACAATGCATTTTTATCTTCAAGTGCTGCATTAACTATAGTTATCTCGTGAGCATTAAAAATGAATAAATTCAGTCAAATAATTCAGCTTTGGGTACATGTATTGATATGAAACTGAGAtttgattaaaaataaatacataatataTTCAATAGGCCTATAAATTACTTTAAACTTGACCCAAACTATAGAAATGAGTTGAGTCATAAAAGGAATGTAGCCTAACTTCACTTTCACGAAAGGACCTATCTTGAAATACCTATAGCATATAGTAAGAAAAACAAAACAGTATTTTATAAACCGAAATATTTGTCTGGTATGCAAGCGCGTAAAACGAACTTTCTTGCAAGTCTACCATTGGTTAACAATGCTATGATTCACCCCAAAGTTCAAGTTATGCGCGCGTAGCTCATATCCAATGGTTAAATAGGGAGGAGTGGTGGGGGTGGATGACAACAATGGGAATTGAACAGATATCCATTTGGAATTATAATGGAAATGCATCCGTTTTGGGTCACTTCCACCACCAACAAAATCCAATTTAACCCCGACTCAAATCAGGATTTCAGGGCCATGCAAGGACCTTTAACTTTGTACCATAGGCCTATATGGAACACCTTCACTTCAATCATTATACTCTTATGAAACACTTCACCGCTGAAGTAACGTCAATGGGCATCATATATGTCTACTGTACAAATTATGTATCTCAAATTGTCCATGCATTCCATAGTTTGAAATACAATTTATTGTTATTTGCAAATAACATAATGTTCATATTTATAAACAATACTCAGCGCCCATATTGTTTCtctaaaataatgtttacattacttATTTATCTTGCAATAACTTCTTTTTGTGAATTAAACATTTAGAGGCCTTTGCATGAAACCTGCAATCTGTCACCTGTATATCACGAGACAAAAGTTGCTGTATCTACCAAATTGTGGTCTTATGATGTGAATGATCTTTTATTGTCAATCTTAAGTGTGTGTAAATTAAAATCCAAATTTAAAACACACTTTGCCTTAAAAATTCTGTAAATGAACTTTTCTATGAGAACTGTGCTACAAAGAAATAACACATTAAATGTTTATAACAAGAATGGGCTATTGCCATTAGAGATGGTATACGTGAATTTACAACATAATATTTAAGCATATGTATAAAGAAGGACAAAGTTTTGGTTGTATTTTTCTGTCAGTATTCTGATATGAGACAAATGTAAATAATTTGTATCATACTGTGAAATTAACCAATAAGTAAATAAACCACAAGAATACTAAGACAAGTTTAAATCCTTTATTTTTTTATAGTGATATAAACAACATGTCAATAATCAGAGGGCTCTAAAAGTACAGGCTGATTAACGTCTACTGTTCATTCACAAACTGCCACTCTGGGAATAATTTAAGGCATAAATGTGATATGGCTAAGCCGCATTTATGTTGAAATAACTGAATATCAATTTGAATAACAATTACTGGCCTGTCTTGAAGGTAAATGAGACAGCAAGGAGAATTTAATCGAAGTACAGAACAAATAATGCCACTTAAAAATATTGTCCTCTGATAGGCAATTGGTGGGTTTATGTATGATGCATGATCATTTCCTTGATACAAGGCCTGCCCCATGCCTCTTTCTGGATGGGCTAGCTATCAATACACATATTTGTGGACGTGTTTTCTCATACAGAGTAGACTGCATTGTGTGATTTGCTATTCGCAGGTGGTCATCAGCTAAATAAACCTATAAAGAAGAATACATTATTTCATGCATGGAAATAATGTATTAGACTTGTTTTACAGTCTGCGATTTAAGTGGTGTTTACATAAATTACAAGCTGGTAATGACCTAATAGGCCTACTTGCATTCTGGTTTCTTTGGGTTTTATTCAAACAAGCAGCACTTGCACAAAATATCAGGTAGTTATAGT

Function

NR:

description
homeobox protein engrailed-2b-like

GO:

id name namespace
GO:0001708 cell fate specification biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0030901 midbrain development biological_process
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09319 EN; homeobox protein engrailed

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613339.2 True 3738 mRNA 0.36 2 65416276 65421979

Neighbor

gene id symbol gene type direction distance location
si:ch211-207d6.2 kiaa1217 coding upstream 29736 65300995 ~ 65386540 (+)
LOC110529128 LOC106569290 coding upstream 153355 65261636 ~ 65262921 (+)
dlgap1a LOC106569241 coding upstream 162303 65142215 ~ 65253973 (+)
cdh18a LOC106569242 coding upstream 329454 65007887 ~ 65086822 (+)
cdh12a LOC106569243 coding upstream 421789 64960058 ~ 64994487 (+)
LOC110530357 LOC106569232 coding downstream 89484 65511463 ~ 65520143 (+)
LOC110530359 LOC106569230 coding downstream 139714 65561693 ~ 65587630 (+)
LOC110530360 tmm70 coding downstream 177352 65599331 ~ 65602141 (+)
pi15b LOC106569289 coding downstream 232460 65654439 ~ 65657897 (+)
LOC110530364 LOC106569228 coding downstream 237310 65659289 ~ 65670369 (+)
G735499 NA non-coding upstream 26235 65389601 ~ 65390041 (+)
G735498 NA non-coding upstream 38158 65377769 ~ 65378118 (+)
G735431 cssa14h10orf67 non-coding upstream 140963 65270075 ~ 65275313 (+)
G735303 LOC100135827 non-coding upstream 273686 65058158 ~ 65142590 (+)
G735243 NA non-coding upstream 453675 64962299 ~ 64962601 (+)
G735530 NA non-coding downstream 6233 65428212 ~ 65433525 (+)
G735537 NA non-coding downstream 17119 65439098 ~ 65442283 (+)
G735538 NA non-coding downstream 25405 65447384 ~ 65447630 (+)
G735569 LOC105024267 non-coding downstream 63041 65485020 ~ 65485307 (+)
G735570 NA non-coding downstream 64802 65486781 ~ 65487147 (+)
G735512 NA other upstream 13177 65402223 ~ 65403099 (+)
G735064 NA other upstream 585373 64830624 ~ 64830903 (+)
G735047 NA other upstream 594231 64821615 ~ 64822045 (+)
LOC110530343 LOC106569291 other upstream 718407 64697289 ~ 64698526 (+)
si:ch211-106n13.3 LOC106569214 other downstream 702229 66100360 ~ 66125932 (+)
G737194 LOC106569203 other downstream 1232683 66654662 ~ 66655753 (+)
kncn kncn other downstream 1277707 66699211 ~ 66704200 (+)

Expression


Co-expression Network