XLOC_002586


Basic Information

Item Value
gene id XLOC_002586
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 7883753 ~ 7886040 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005747
atttattagagcagctgtcgatgtgggcaggtgttcataaaacgtgattttaatagtttggcgtgactcctttttcattgcccgggatttagcagccagacgcagcttctgcaatggtcgacattaactgctcccagcagcggatctgattaacacgataccaaagtgattttgttacctgtggatcttcaaacttcacatccagagttgtgaggaatcagaggtgcatgcaGCTGCCCACAagaaaaatttgccatcagcccaacacagtttggattatcataggactgtcagaggtttgccaaacctgtcaaatgcatgatggctcctgtttggacttaccaatgtcctcgacttcaagtatccatcaaaactgtatacatttaagatgtattagagactctttgtgggactggacattatgcatccaaaatcttcatcaaaatatgcaaatctcctcactgagttgccttggatgatttctcaataggatctggtattattaatgtttttatttatgtattgtgtacgtgtagccacattaatggcctattttgtagtcactattaaaaggaacattgattgatattgaatacatgttatggtctttaatccatcttcccattcttatttaattgttattgacaggaaagtctgtttatctgtgtttactagtgtatattgtgcttacaatatagaaacgccgatttattttctgaggttacagccagaagtcaattaaattcgttttaaatgacatatgcatggttaattttatttagatcattaagttcataatacttaattaaaatgagtacagtcaacatatagcaatgtataagtaagttaagttt
>TCONS_00005748
agcttctgcaatggtcgacattaactgctcccagcagcggatctgattaacacgagttgtgaggaatcagaggtgcatgcaGCTGCCCACAagaaaaatttgccatcagcccaacacagtttggattatcataggactgtcagaggtttgccaaacctgtcaaatgcatgatggctcctgtttggacttaccaatgtcctcgacttcaagtatccatcaaaactgtatacatttaagatgtattagagactctttgtgggactggacattatgcatccaaaatcttcatcaaaatatgcaaatctcctcactgagttgccttggatgatttctcaataggatctggtattattaatgtttttatttatgtattgtgtacgtgtagccacattaatggcctattttgtagtcactattaaaaggaacattgattgatattgaat
>TCONS_00004814
ttagtaggtaaaactaacgttgcagaaccgattaacaagaaccatttaaattgtatgcacctcattctaaaatgcatgttcttggtctttagataccaaagtgattttgttacctgtggatcttcaaacttcacatccagagttgtgaggaatcagaggtgcatgcaGCTGCCCACAagaaaaatttgccatcagcccaacacagtttggattatcataggactgtcagaggtttgccaaacctgtcaaatgcatgatggctcctgtttggacttaccaatgtcctcgacttcaagtatccatcaaaactgtatacatttaagatgtattagagactctttgtgggactggacattatgcatccaaaatcttcatcaaaatatgcaaatctcctcactgagttgccttggatga

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000114812

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005747 False 854 lncRNA 0.36 3 7883753 7886040
TCONS_00005748 False 443 lncRNA 0.39 2 7884013 7885937
TCONS_00004814 True 414 mRNA 0.39 3 7884128 7885654

Neighbor

gene id symbol gene type direction distance location
XLOC_002584 inpp5ja coding downstream 25200 7831439 ~ 7858553 (-)
XLOC_002583 mat2aa coding downstream 62067 7810455 ~ 7821686 (-)
XLOC_002582 mpx coding downstream 97808 7778870 ~ 7785945 (-)
XLOC_002581 si:ch73-340n8.4 coding downstream 111319 7769814 ~ 7772434 (-)
XLOC_002580 loxa coding downstream 126877 7738540 ~ 7756876 (-)
XLOC_002587 slc35e4 coding upstream 14972 7901012 ~ 7913591 (-)
XLOC_002588 osbp2 coding upstream 30680 7916720 ~ 7974155 (-)
XLOC_002589 ewsr1a coding upstream 89545 7975585 ~ 7988417 (-)
XLOC_002590 NA coding upstream 95079 7981119 ~ 7983744 (-)
XLOC_002591 atp6v0a2a coding upstream 102706 7988746 ~ 8033468 (-)
XLOC_002575 BX537303.2 non-coding downstream 371630 7512008 ~ 7512123 (-)
XLOC_002572 NA non-coding downstream 629855 7238244 ~ 7253898 (-)
XLOC_002571 NA non-coding downstream 822216 7050325 ~ 7061537 (-)
XLOC_002570 CABZ01061993.1 non-coding downstream 874263 7009374 ~ 7009490 (-)
XLOC_002566 BX511100.4 non-coding downstream 1156639 6725657 ~ 6727114 (-)
XLOC_002602 NA non-coding upstream 732678 8618718 ~ 8621543 (-)
XLOC_002603 NA non-coding upstream 752881 8638921 ~ 8657677 (-)
XLOC_002605 BX571955.1 non-coding upstream 789850 8675890 ~ 8677828 (-)
XLOC_002606 NA non-coding upstream 955658 8841698 ~ 8858568 (-)

Expression


Co-expression Network