XLOC_025860 (mcrip1)


Basic Information

Item Value
gene id XLOC_025860
gene name mcrip1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 59864872 ~ 59876861 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050727
AGACTTTACCCCGGAAGTAATTGGTTGGCATTAGCAACGTTTCGGCCGAGCCAGGCCTGAATACAGAGATAGCAGGAGAAAGAGAAACAAACAGACAGAAAACACTGAAGAGCCTGCAAAGTTTCCTGTTGAGCCTCATTTTGTGAGATTGTGAGGCAAGAGACTTTAACAGAATGACAAGCTCCTCTACACCTAGAATGCACACGTACAAGAGGACGTCCAGCCCTCGGTCACCGACGAACACAGGAGAGCTTTTCACACCAGCGCATGAGGAAAATGTGCGCTTCATCCATGACACTTGGCTTTGTGTTTTGAGAGACATTAAATGCCCACAAAATCATGAACGCAATGATCGTGGACCACAGGAATATGTGGAGAAAAACCCAAATCCCAACCTACATTCTTTTATACCAGTGGACCTGAGTGACCTTAAGAAGAGGAACACACAAGACTCCAAGAAGTCTTAGACTGTTCGCTCCCTTTCTGATCcacaagtgtttattttgtttattttttgtcctCCATTTTACATTCGGGACCTTTTTACTCTATCAGTCTTCTATCGACCAACAAAAATCCACACAAGCCGGGGATATTTGCCCACCTTCAGTCCAGAAAGTTCATTCTTCTCTGCTCATGGACCTGCGTCTGGACTTACAGGCTGCCGCCTATTTATGCTTTACGTTTTCCAGAGCCGTTTGAGCCATTTTTCATATTCATCCAGgctctgactttttttttttttttttttgcgcttcGGGTTTATAATAATTATGTGCATTTTTTCAGTGTCGAGATGACAAACGAGAaaagcaaagaacagttgaggtGCTTAAACTGCTGTTGGACAGACTCTACACAGACTTTCTCAAAAAAACGGGATGCAGTTCTGGATTTTTCCAAAACACGCTCGTCATCCGCCGCGGGGTTCAAGTTAGTTTTATAGATGCGTAGATGAGTTAGCGAGGTTTTGTCTGATAGCACAGGTAAGTTCGACTCAGCAAACTTTTTTTAGTAGATGTACCTCCATTTTTAACTATGAATTGATACACCTTCGATATCTTTAAGTAGACTTTTccacgtttatttttttttttcgttcccAGCCCTTaagaataaaatttaaataaagattaCTTTTATGTT

Function

symbol description
mcrip1 Predicted to be involved in regulation of epithelial to mesenchymal transition. Predicted to be located in cytoplasmic stress granule and nucleus. Orthologous to human MCRIP1 (MAPK regulated corepressor interacting protein 1).

GO:

id name namespace
GO:0010717 regulation of epithelial to mesenchymal transition biological_process
GO:0005634 nucleus cellular_component
GO:0010494 cytoplasmic stress granule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060825-259 Predicted to be involved in regulation of epithelial to mesenchymal transition. Predicted to be located in cytoplasmic stress granule and nucleus. Orthologous to human MCRIP1 (MAPK regulated corepressor interacting protein 1).

Ensembl:

ensembl_id ENSDARG00000078383

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050727 True 1146 mRNA 0.41 5 59864872 59876861

Neighbor

gene id symbol gene type direction distance location
XLOC_025859 CU693479.1 coding upstream 2075 59851537 ~ 59862797 (+)
XLOC_025858 pecam1 coding upstream 42444 59784632 ~ 59822428 (+)
XLOC_025856 NA coding upstream 640676 59212160 ~ 59224196 (+)
XLOC_025855 MGAT5B coding upstream 697048 59117136 ~ 59167824 (+)
XLOC_025854 rasd4 coding upstream 811878 59051503 ~ 59052994 (+)
XLOC_025861 alyref coding downstream 3456 59880317 ~ 59891841 (+)
XLOC_025862 arhgdia coding downstream 22591 59899452 ~ 59947208 (+)
XLOC_025863 si:ch211-110e21.3 coding downstream 130842 60007703 ~ 60016714 (+)
XLOC_025864 zgc:174268 coding downstream 157333 60034194 ~ 60103938 (+)
XLOC_025865 NA coding downstream 160689 60037550 ~ 60043897 (+)
XLOC_025429 BX649540.1 misc upstream 29615836 30248739 ~ 30249036 (+)
XLOC_025853 NA non-coding upstream 837035 59024934 ~ 59027837 (+)
XLOC_025851 CABZ01044154.1 non-coding upstream 897775 58961904 ~ 58967097 (+)
XLOC_025850 NA non-coding upstream 1007389 58835461 ~ 58857483 (+)
XLOC_025848 NA non-coding upstream 1053039 58806215 ~ 58811833 (+)
XLOC_025868 NA non-coding downstream 189527 60066388 ~ 60067768 (+)
XLOC_025870 NA non-coding downstream 479353 60356214 ~ 60357972 (+)
XLOC_025871 NA non-coding downstream 506261 60383122 ~ 60401867 (+)
XLOC_025872 NA non-coding downstream 511388 60388249 ~ 60388895 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G508878 NA unknown CI01000351 null 644488 ~ 645103 (+)
bowfin (Amia calva) G28366 NA non-coding CM030123.1 CM030123.1 41826442 ~ 41826766 (-)