LOC110530359 (LOC106569230)


Basic Information

Item Value
gene id LOC110530359
gene name LOC106569230
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 65561693 ~ 65587630 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613347.2
AGCCATGGGGCAACCGGTTTGAAGTTGATCTCACATTCAAAGTTGGTGTGCCCATTCCTAACTGAGGGGTCAGTGGATTTGACCTGACCTCCTCCTGACCTATCAGAACACCTGAACTGTGACCATCATGGCGGAGAGAGCTGGCTTTGGGATCCCCAAAAGCAACTTACGTCCTGTAGGCTCACTCCCACCAGAGCCTATCGATATCATCCGTACCAAGGCCCGATCCAGAAGAGTCCGCATCAATGTTGGGGGTCTTGTCCACGAGGTCCTATGGAGGACACTGGACCGTCTGCCCAGGACCAGGCTGGGTAAACTCAGAGACTGCAATACCCACGAAACCTTAATGGAGATCTGCGATGATTACAGCTTGACTGATAACGAGTACTTCTTCGATAGGCACCCAGGAGCGTTCTCCTCCATTCTGAACTTTTACAGAACAGGGAAGCTGCACATGATGGAGGAGATGTGCGCCCTGTCCTTCGGCCAGGAGCTTGACTACTGGGGTATAGATGAGATCTACCTGGAGTCCTGCTGCCAGGCCAGGTACCACCAGAAGAAGGAGCAAATGAACGAGGAGTTGAGGAGGGAGGCTGAGTCACTCAGAGAAAAGGATGGGGAGGAGCCGGAAGAAGGCTGCTGTCCAGACAAGAGACAGAAGCTGTGGGACCTCCTTGAGAAGCCTAGCTCTTCTCTTGCTGCTAAGTTCCTGGCCTTTGTCTCCGTATTCTTCATCGTTCTATCAACAATCTCATTATCACTCAATACCTTGCCGGAGCTACAAGTCGTTGATGAGTTTGGACAGTTCAATGACAATCCCAGCCTAGCGCATGTTGAAGCTGTGTGCATCGCCTGGTTCACGATGGAGTACCTCCTCcgcttcctctcttctcctgacaAGTGGCAGTTCAGCAAAGGCCCACTGAACGTCATTGATTTACTCGCTATCCTGCCCTACTATGTAACTCTCTTCCTGACCGAATCCAACAAGAGTGTTCTGCAGTTCCAGAATGTCAGACGAGTGGTCCAGATATTTCGTATCATGAGAATCTTGAGAATTCTAAAACTGGCCAGACATTCCACTGGACTGCAGTCCCTTGGGTTCACCCTTCGGCGCAGTTACAATGAATTGGGTCTGTTAATATTGTTTCTGGCTATGGGTATCATGATCTTCTCCAGCCTGGTATTCTTTGCCGAAAAAGATGAAGATGCCACAAAATTCACTAGTATTCCAGCTTCATTCTGGTGGGctaccattaccatgacaactgtAGGTTATGGGGACATATATCCACAAActcttcttggtaaaatagttGGTGGGCTCTGCTGTATTGCAGGTGTATTGGTCATTGCATTGCCCATCCCCATCATTGTGAACAACTTCTCAGAGTTTTACAGAGAGCAGAAGAGACAGGAGAAAGCCATCAAGAGGAGAGAGGCCTTGGAGCGGGCCAAGAGGAATGGCAGTATTGTTTCTATGAATCTGAAGGATGCATTTGCTCGCAGTATGGAGCTGACGGATGTTATGGTGGAGAAAGGTGACGAGAAACGGCCGATGGATAACCATCTCTCGCCTAGTAGGTGGAGCAGTAGGCACGGCAACTCTGAGGTTAGTCCAAAATCCCAGGCGAGGTATAAAGAGGTTGCTCAACTGGGATCTCCAGATAGGGTCAATCCACCAAGAACCAGCCCACAGCACCTGAACGCCCAGATATTGGAGGAGATGTACAACAAGATGACGACCACTGCCAACATTGGCTCTGGAGCTCCACATGAACAAGGACAGAAGCTTGAGGAAGTAATGGAAATGAAGGTAGTGTCTTCTGGACTAAAGCCCCCCCCAATCAAGGAAAGAGCCATGGGTGACCTCAGGAGCCCATCCAGTGTGGACAGCTTTGCCAGCTGCACTACGGAGTTCAGTGTGGCAGAGAGCAGTTCCCTCCTCCCCAACGTAGCAGGACGGAGAGCTCCTCATCCCCTCGACCTCAGCCAGATCACCTCTGTGGAACCAAAAACCACAGGCAAAGTTCAGCCGGCCACCATCATCAAGGAGGGTCTTTATGAGTTTGTCTCAAGCAATCCAGAGGGGGCCTCACAGGGGGAGGATAATCAAAGCTTTGACATGAGCGTCGAAAGCATCCGCAGTTCTCTCAGAGGCAACAATCCACAGAAGACAAAATCTCTCAAAGTCAATTTCAATGAATCTCAGGGAGAGGTGCCATTAACACCTCCCAGCACTAAGTCCCCTCAGTCTCTCAGTGCAACTCTGTCTCCACCAGGATACCAGCCCTCCCCACCCCCAGGCCAGGGCCCGGTGACCAGCCCATGGTCTCCAGGACAGTCAGGCCAAAGAGAGGATGGAGCCCAGGGCTTAGAGGGAGAAGGTCCGCCTTCCATTTTAAGCCATAGCGGGAATCACATGGACAGGGCCGCCGTCTTCAGCCCTTTGTCACCTAAATCCCTCAACTGCACTACTCAGGAAGTGGTCGTCGCCGGcaacggggaaagagagacaggcaACAGCCAAAAGGAAAACCACATAGTTCTGGATGGAAGTCTATCTCCACCTTGTGAAACAAGCATGTGACTAGTATAGGTGGACGGTCAAGGAAAGAGGAAACAGACTCTCTGTTTGtgtatgaagaaaaaaaagaagcacACTAATGTAGTGAATAATAAGTTGTCTGCATGACTTGACAAGTATTATTTCTGATAACATCACTGTTTCTGAAGACCTATGAGAACTGCTTTTTGCTGCAGACGTGGAACTTATAACAGTGGATTTTACTATAAGGCTCCAATGTGAGCAAAGAAACAACCTAGTATGAATGAGGACATTTATGAACAAATTGTACATTATGGTCCAGGACTTTTTACGTAGCAAGTTATTCATTGCAAGTTTCTTTGTTTTAGCTTGCTAGTGTGTTGGGACAAGGACATCATCTGAAGAGAGAAATGAGGAAAGGCTTTGGGATTTTTATATAAGGGCTCATCATTTGTGAAACAGTATCAATGTCATATCATATTCTGTTACTTGATATGACTTGCATTCATTTGCTAAGTTTAATATACTTTTCATGTTATTTTGTCTGTTTAGATTTTGCATTGTTCTCAATCAAGTCAACCAAGAGATATATGGAACAAGCAACAGTCTCTTAGTTCAGGGAAGCAAAAAGAAAGTGCAGCATATTATATAGCAAATCTATATGGAAATAGACCAATAAGACAGTTTTAATAATAGCCTATACATGACTATCTATGATTGCTTTCTAATACTTTATATTCTACTATTTTATATTCTGTTCGTGAATGAGCTTACGTCCCTAATTTCTGTGTTTAGCTCTGTTGTTGTGCAACCCTTCATCCATGCAATGGGAAATGGACAAGCCATACAAGTATTGCATGGCAACCTCAAGGATTTACACTATGGCAAAAGTGATTAGATAATGACAACCATTATACTTAAGGGGAAAAAAGTATCATACAGCAGCACTTCATTCACTTAGATACAGATCATATCAACTGAATGGTTATTCAAGTTCTTCACTAAAATGGACATGCATTACTGCTGAGTACCAGATCCATTCTGATCAAAGGAAATCTGTTGTTACATTCCTCACTGTATTCATGTTGTTATAATGCTGCCTTCGAGAAGTGCAGAACATGTGTTGGGTATGTATGTATGCTAGTTGGAACAAATACTGTGTATGTGATGTTTGATGTGTCAAGTTGAATTTATATTGTATGGGGCTGATTGCTAGgtccaatacagtacagtactcagGTAGAAAGTATAACACTGCCCTCTACAGACGGAGGATTTTAAGGCACTAATCCAAGAATTCATGCATATCTCTAGTTGGAATTCCTCTTAATATTGAACAAAGTAACATCTTTATTGATTCATTGTGCATTTTAAGTTTTGCATGGCTGATCTACTCAGTAAATGGTAGACAACTGTTgcagcttttttttaaatgatgccGACAAGTCTGAACTGAATCACGAGGGTTACTGCGGACAATAGTAATACTACAGTGTATTAACTATATAAACTACTGTGCTTATATTCTATTTAAAGTAGATTATGCTACCATATTATGTTTTGTTGGTTCACTCGTATGATTGATTCTATTTTTCTAAGATAAAATAGATCTGGATTGTAATATTTCCTGGTACATTTTTGAATTGTGTGCCTTTTCATAAATAGACATTTATGAGAAGGCGAAAACCTACATAATTTGGCTGGTACATAGAGATctataaataatgtatttctagTAGGGATACATATGAGGTGATGATAAGCAAATAGCTATTGTACCAAGTTCTCGGGTTTTGTATAACTTGAAAGCTTTATCATATCATGGCTTACTTCCTCCTTTCAAAGTACCATTTGCTGTcagtaatgtacagtacagtacagtacagtacagtacagtgcagtagactTATGTTAGATCATAATTGAGATGTCATGGAAAACAGGAAAAGTTACTGCACTGACACACCCTGGTATGACACCACCTCTTATCCACCAAGTCATCTGTAAAACGATTTGTATTTTTGTTGTAATTATCTTACATTCTTTTGTACAGTTAGCTTGATCATACGCACATCCTCAAATCAATACTTACAACCACAATATACTGTAGGTAACTCTAGGGTCAATTCCGCAGATATTTTTCTTCTGCCTGCTTTTTTTTGATGTTCCCTCCATCCCAATATACTTTGGTTGTTTTAACGGTATGTGACCATAGTCATCTTAATTGTTAGTCAACATAACTTGATAGTGAATGAATAGTAACTTATTGTTTTACAATAGGTTTATTACCATATGCAAGACAAA

Function

NR:

description
potassium voltage-gated channel subfamily B member 2-like

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005251 delayed rectifier potassium channel activity molecular_function

KEGG:

id description
K04886 KCNB2, KV2.2; potassium voltage-gated channel Shab-related subfamily B member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613347.2 True 4852 mRNA 0.43 2 65561693 65587630

Neighbor

gene id symbol gene type direction distance location
LOC110530357 LOC106569232 coding upstream 41550 65511463 ~ 65520143 (+)
LOC110530354 LOC106569236 coding upstream 139714 65416276 ~ 65421979 (+)
si:ch211-207d6.2 kiaa1217 coding upstream 175153 65300995 ~ 65386540 (+)
LOC110529128 LOC106569290 coding upstream 298772 65261636 ~ 65262921 (+)
dlgap1a LOC106569241 coding upstream 307720 65142215 ~ 65253973 (+)
LOC110530360 tmm70 coding downstream 11701 65599331 ~ 65602141 (+)
pi15b LOC106569289 coding downstream 66809 65654439 ~ 65657897 (+)
LOC110530364 LOC106569228 coding downstream 71659 65659289 ~ 65670369 (+)
LOC110530365 LOC106569227 coding downstream 89197 65676827 ~ 65680382 (+)
LOC110530367 LOC106569226 coding downstream 115633 65703263 ~ 65719986 (+)
G735573 NA non-coding upstream 69544 65491852 ~ 65492149 (+)
G735570 NA non-coding upstream 74546 65486781 ~ 65487147 (+)
G735569 LOC105024267 non-coding upstream 76386 65485020 ~ 65485307 (+)
G735538 NA non-coding upstream 114063 65447384 ~ 65447630 (+)
G735537 NA non-coding upstream 119410 65439098 ~ 65442283 (+)
G735656 NA non-coding downstream 57196 65644826 ~ 65645051 (+)
G735678 NA non-coding downstream 101076 65688706 ~ 65750913 (+)
G735705 NA non-coding downstream 160146 65747776 ~ 65775479 (+)
G736463 NA non-coding downstream 307559 65895189 ~ 65895623 (+)
G736466 NA non-coding downstream 309173 65896803 ~ 65897040 (+)
G735512 NA other upstream 158594 65402223 ~ 65403099 (+)
G735064 NA other upstream 730790 64830624 ~ 64830903 (+)
G735047 NA other upstream 739648 64821615 ~ 64822045 (+)
LOC110530343 LOC106569291 other upstream 863824 64697289 ~ 64698526 (+)
si:ch211-106n13.3 LOC106569214 other downstream 536578 66100360 ~ 66125932 (+)
G737194 LOC106569203 other downstream 1067032 66654662 ~ 66655753 (+)
kncn kncn other downstream 1112056 66699211 ~ 66704200 (+)

Expression


Co-expression Network