LOC110530364 (LOC106569228)


Basic Information

Item Value
gene id LOC110530364
gene name LOC106569228
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 65659289 ~ 65670369 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985992.1
GCTAAATCTAAATTTGGCATATAAACGCAGTGAGCGTTCATACTTGAATGATTATACAGGTACGCTCGAGATTCCTTGGTGGATGTACGATATCCGAACTTACTTACTTATTACGTATATTTAGGCTCCTATAGATTTCCTAAATCTTAGGATGTATAAAGAGTAGCTTTCATGTTCACCATTCTGCTTCAATACAACTTTTGGAGCTGGATGGACATTGTTTCCCGGGGATAGTTGACCAGATTGAACAAAACGTTTTGCCGACAGAATACAGATTTTGTATTGGAGTGAACCACCGAGGCTGGAGAGGCTGATCATCATCATGAAGGGTGTACCTCAGGACTGGCTGAGAGGGTTTGGGTTGCTATTCTTTGCCCAAACAGTACTTTCTATGGAGATCCCTAACTCTACTCACCTGGAGGCTATACTGGAGAAGTATATGAACAAAGATGATGAGTGGTGGGTGTccaaacagagagggaagagagccaTCACTGACGGTGATATGCACCTCATCCTCGATTTGCACAACAAGCTCAGAGGTCAAGTTTATCCTCAAGCTTCAAATATGGAGTATATGGTTTGGGATACGGAGCTGGAGAGGAGTGCTGAACACTGGGCACACACCTGCCTGTGGGAGCATGGACCACAACACATGCTAACCCAGATTGGACAGAACCTGGGTGCTCACTGGGGAAGAGACCGACCACCAACATTTCACGTCCAAGCCTGGTATGATGAAGTGAGAGACTACAGCTATCCCTATCCACAGGAATGTaacccacactgccctttcagaTGTTCTGGTCCCGTCTGCACTCACTACACACAGATGGTTTGGGCAACAAGCAGCCATATTGGATGCGCTATCAATGTGTGCTACAATATGAATGTGTGGGGCATGATTTGGACTAAAGCTGTGTACTTGGTTTGCAACTACTCACCGCCGGGAAACTGGTGGGGGCATGCCCCATACAAACATGGCACCCCGTGCTCTGCCTGTCCGCCCAGCTACGGTGGAGGCTGTAGGGACAATCTCTGCTACAAAGAGAACGGAGTACAGAGACGTCCTGCCCCTGAACTAGAAGAGACAAATTACATTGAGCCGGAGTCGCAGCCAGAACCGAGGGCCCAAGAACCTCGGGCGAGACCACTGCCCCCAACACCATCATCCAATGACAACGTGGAGAGGAATGAGGTGGTCAGCACAGTGCAAATGTGTCAACAGATGGACTGTGAGACCAAGCTGCGTGATCGTTGTAAAGGAACCACTTGTAATAGGTACGAGTGTCTTCCTGGATGCTTGTCTAGCCCAGGAAAAGTAATAGGGACTGGGTATTATGATATGCAATCAAGTGTTTGCGGAGCTGGTTTGCACGCTGGAATCATAGACGATGGCGGAGGCTGGCTGGACATTACAAGACAAGGAAGAAAATCACATTTCACAAAGTCGTACAAAAATGGTGTTCAGTCTGTTGCGATGAACAGGAGTGCAAATGCCTTCAACGTATTTACTGTACCAGTAAAAGCAGTCACATGTGAGACCACCGTTGCACGGTTTTGTCCCTACAAAAAACCTTCACGGCACTGTCCAAGGATGTATTGCCCCCGCAATTGTCTGCATGAGACTCGTGCCAGAGTCATTGGAACACAATGGTATTCAGATAAATCCAGTATATGTCGAGCAGCCATCCATGCTGGTGTCATTCAGAATGACTCAGGAGGCTACCTTGATGTGCAGCCCGTGGacaagaggagacagtacagCGGTAGCTATCAGAACGGAATCTCTTCAGAAAGCCTACAGAATCCCTCAGGTGGCAAAGCATTCAGAGTATTTGCAGTCATTTGAATCCACATTGCAAGGACACTGGCAATGAAAATGAGCACTTGTCATTTCACGGCCAGTAATTACACTGCTTATGGTTTCCTTCTCTTGCTAAGCTGCACCTCAGCTTCTCAAGGCTGTTCAATTCACTATGATCACAACATATACAAAGATACACTGTTCAAATGTAGATCTTTTAAGACTGTATATTGGATGTATATAACATGTTGTAAATAAGTTGAATGTCTAACAAATTGCAATCTCTCATAGATATTTGTATCAGAACAGAAAAATATGCAATGTGCATGCATGGTAAAGGTTTTAATTCTATGATATTTCAAATCTTGTATTGTTTTTACAAAATGTGTAAGTATTTTATACATTTTGATGATTGATGTTGATGTTATATTTCATGATACAAAATTGTATAGCCCTTATTCATAGATTTTTACAGTTCAAGCCTGGCTGGCCAGGAGTGCGTCAGAGAATTTCATAGCACGAACCACATGGTGAGACACCCAAAATATgcattatttatttacatttgtgAAGAAATCATTGTTATCAATGGTCAATTCTGGAAGGACAGTTGGGACTTTCATAGCATGTCTTTTAGCTGAACATACAGTATAGCAATTATTGTATGTTTCATGAAAACCTTATCAGCTCTCCATTGATTGCTACTGTTCATAATACAGTAGCTGTATGGTATGTAGTTTATAAAGCACTACCTCACGTTGTTAGAAAGGCACCATTAATGTACTGGAAACTACTGGTACCCTGTCTGGATGGCAGAAAGAGTACTGTCTTACTGTCCTAGATCTAACATGTGTTTGTCAGGTTCACAGGGCGTTACTGTGGGATAAAGGGCTAAATCCTGGTGTATTCAGTAGTAGCTTTTCATATTTCTAAACCCAATTATCTGGTTGAAACATTAATAATATTTTGTATATACATTATACAGCTATTACACATGTTCATCTATCCACAGAACTCAGGCACTCATATTCAACATTTCAAAAACAGAATTTGTAGAAAGCCCATATCCTTTCCAGGCAGGAGCAGTAAAGAATGAAAGCTGAGCAAGCCCTTATGTTAAACTACTCGGGCCCACTGGCTGTGCGCTAGGTAGAGCAGACAAAGAGTGACTTTGTGTGTGTTGATCTCGATCTCACTTCCCTGGATGCATTTCCCCCACGCCTGCCACAGATGTGGTCAACCCCAGCTGAAAGGTCTCTGTCAGTCACccgtacacacacataccctctGTGGGATGCTTTATGTAAGGGTTGAGATTCAAGTTCAGTATATTTTACTCAATAGTTTCGTCTGAAAGGAGTTTGCTTCGGATAACGCATTTTAACTAATGCTGTAACTTTTTTAAAGGGGCAAGATCATATCTAAGATAATGTACCCTATTCTCTAATTTTGTCAAAAGCTCTTGTTAGACTACGTATATAGTCAGTCAACATAAGAGATGGTTAAATATTAAAGCTGTAAGTGGGTCAGACTTACTTCAATATGGAATAGAAACAAGGGAATCCAAAAGGACAGACATGTTGACCTTTATCCATAAACTTTTATCCATTCTTTAGAAATAGATATTACATACTAGCTTCCATTGCTAGTGCAAAGCTATGGTTAATACATTGTATACACTGTACTGTAGTGGTGACCCATTATAACACACAACCCCCCCTATCACCACCATTCTGCTGAGTGACCGGGGGGCTGGACTGAGAGGAACTTTTCCAGGAAGAGGACCAGGGCTGATAGAGAGCTGCTGATGGCCTCATTGAGTTCCGCACCACTCTCCAGAGAGAAGAGGCATGCATCAGAACACTGTCAAAATTCACAGGGCAGTGTTGCAGAGGAGTCCACTGGCAAAGATGCCAACTGTTCACTGCTGCAGGAGTGTTATACAACATGAAAAGACCCCACCGTCACAGACCCGCACAAGGATATATACATCACCATCTCAGAGGTGCTGTTTGGTGAAATTAGATTAGTTTCCTTTCATTTGGACTGTAGCGACTGCTAATAGTATACCTGatactaaataaaataataatcaatc
>XM_021613351.2
TAAATCTAAATTTGGCATATAAACGCAGTGAGCGTTCATACTTGAATGATTATACAGGTACGCTCGAGATTCCTTGGTGGATGTACGATATCCGAACTTACTTACTTATTACGTATATTTAGGCTCCTATAGATTTCCTAAATCTTAGGATGTATAAAGAGTAGCTTTCATGTTCACCATTCTGCTTCAATACAACTTTTGGAGCTGGATGGACATTGTTTCCCGGGGATAGTTGACCAGATTGAACAAAACGTTTTGGTAAaagCCGACAGAATACAGATTTTGTATTGGAGTGAACCACCGAGGCTGGAGAGGCTGATCATCATCATGAAGGGTGTACCTCAGGACTGGCTGAGAGGGTTTGGGTTGCTATTCTTTGCCCAAACAGTACTTTCTATGGAGATCCCTAACTCTACTCACCTGGAGGCTATACTGGAGAAGTATATGAACAAAGATGATGAGTGGTGGGTGTccaaacagagagggaagagagccaTCACTGACGGTGATATGCACCTCATCCTCGATTTGCACAACAAGCTCAGAGGTCAAGTTTATCCTCAAGCTTCAAATATGGAGTATATGGTTTGGGATACGGAGCTGGAGAGGAGTGCTGAACACTGGGCACACACCTGCCTGTGGGAGCATGGACCACAACACATGCTAACCCAGATTGGACAGAACCTGGGTGCTCACTGGGGAAGAGACCGACCACCAACATTTCACGTCCAAGCCTGGTATGATGAAGTGAGAGACTACAGCTATCCCTATCCACAGGAATGTaacccacactgccctttcagaTGTTCTGGTCCCGTCTGCACTCACTACACACAGATGGTTTGGGCAACAAGCAGCCATATTGGATGCGCTATCAATGTGTGCTACAATATGAATGTGTGGGGCATGATTTGGACTAAAGCTGTGTACTTGGTTTGCAACTACTCACCGCCGGGAAACTGGTGGGGGCATGCCCCATACAAACATGGCACCCCGTGCTCTGCCTGTCCGCCCAGCTACGGTGGAGGCTGTAGGGACAATCTCTGCTACAAAGAGAACGGAGTACAGAGACGTCCTGCCCCTGAACTAGAAGAGACAAATTACATTGAGCCGGAGTCGCAGCCAGAACCGAGGGCCCAAGAACCTCGGGCGAGACCACTGCCCCCAACACCATCATCCAATGACAACGTGGAGAGGAATGAGGTGGTCAGCACAGTGCAAATGTGTCAACAGATGGACTGTGAGACCAAGCTGCGTGATCGTTGTAAAGGAACCACTTGTAATAGGTACGAGTGTCTTCCTGGATGCTTGTCTAGCCCAGGAAAAGTAATAGGGACTGGGTATTATGATATGCAATCAAGTGTTTGCGGAGCTGGTTTGCACGCTGGAATCATAGACGATGGCGGAGGCTGGCTGGACATTACAAGACAAGGAAGAAAATCACATTTCACAAAGTCGTACAAAAATGGTGTTCAGTCTGTTGCGATGAACAGGAGTGCAAATGCCTTCAACGTATTTACTGTACCAGTAAAAGCAGTCACATGTGAGACCACCGTTGCACGGTTTTGTCCCTACAAAAAACCTTCACGGCACTGTCCAAGGATGTATTGCCCCCGCAATTGTCTGCATGAGACTCGTGCCAGAGTCATTGGAACACAATGGTATTCAGATAAATCCAGTATATGTCGAGCAGCCATCCATGCTGGTGTCATTCAGAATGACTCAGGAGGCTACCTTGATGTGCAGCCCGTGGacaagaggagacagtacagCGGTAGCTATCAGAACGGAATCTCTTCAGAAAGCCTACAGAATCCCTCAGGTGGCAAAGCATTCAGAGTATTTGCAGTCATTTGAATCCACATTGCAAGGACACTGGCAATGAAAATGAGCACTTGTCATTTCACGGCCAGTAATTACACTGCTTATGGTTTCCTTCTCTTGCTAAGCTGCACCTCAGCTTCTCAAGGCTGTTCAATTCACTATGATCACAACATATACAAAGATACACTGTTCAAATGTAGATCTTTTAAGACTGTATATTGGATGTATATAACATGTTGTAAATAAGTTGAATGTCTAACAAATTGCAATCTCTCATAGATATTTGTATCAGAACAGAAAAATATGCAATGTGCATGCATGGTAAAGGTTTTAATTCTATGATATTTCAAATCTTGTATTGTTTTTACAAAATGTGTAAGTATTTTATACATTTTGATGATTGATGTTGATGTTATATTTCATGATACAAAATTGTATAGCCCTTATTCATAGATTTTTACAGTTCAAGCCTGGCTGGCCAGGAGTGCGTCAGAGAATTTCATAGCACGAACCACATGGTGAGACACCCAAAATATgcattatttatttacatttgtgAAGAAATCATTGTTATCAATGGTCAATTCTGGAAGGACAGTTGGGACTTTCATAGCATGTCTTTTAGCTGAACATACAGTATAGCAATTATTGTATGTTTCATGAAAACCTTATCAGCTCTCCATTGATTGCTACTGTTCATAATACAGTAGCTGTATGGTATGTAGTTTATAAAGCACTACCTCACGTTGTTAGAAAGGCACCATTAATGTACTGGAAACTACTGGTACCCTGTCTGGATGGCAGAAAGAGTACTGTCTTACTGTCCTAGATCTAACATGTGTTTGTCAGGTTCACAGGGCGTTACTGTGGGATAAAGGGCTAAATCCTGGTGTATTCAGTAGTAGCTTTTCATATTTCTAAACCCAATTATCTGGTTGAAACATTAATAATATTTTGTATATACATTATACAGCTATTACACATGTTCATCTATCCACAGAACTCAGGCACTCATATTCAACATTTCAAAAACAGAATTTGTAGAAAGCCCATATCCTTTCCAGGCAGGAGCAGTAAAGAATGAAAGCTGAGCAAGCCCTTATGTTAAACTACTCGGGCCCACTGGCTGTGCGCTAGGTAGAGCAGACAAAGAGTGACTTTGTGTGTGTTGATCTCGATCTCACTTCCCTGGATGCATTTCCCCCACGCCTGCCACAGATGTGGTCAACCCCAGCTGAAAGGTCTCTGTCAGTCACccgtacacacacataccctctGTGGGATGCTTTATGTAAGGGTTGAGATTCAAGTTCAGTATATTTTACTCAATAGTTTCGTCTGAAAGGAGTTTGCTTCGGATAACGCATTTTAACTAATGCTGTAACTTTTTTAAAGGGGCAAGATCATATCTAAGATAATGTACCCTATTCTCTAATTTTGTCAAAAGCTCTTGTTAGACTACGTATATAGTCAGTCAACATAAGAGATGGTTAAATATTAAAGCTGTAAGTGGGTCAGACTTACTTCAATATGGAATAGAAACAAGGGAATCCAAAAGGACAGACATGTTGACCTTTATCCATAAACTTTTATCCATTCTTTAGAAATAGATATTACATACTAGCTTCCATTGCTAGTGCAAAGCTATGGTTAATACATTGTATACACTGTACTGTAGTGGTGACCCATTATAACACACAACCCCCCCTATCACCACCATTCTGCTGAGTGACCGGGGGGCTGGACTGAGAGGAACTTTTCCAGGAAGAGGACCAGGGCTGATAGAGAGCTGCTGATGGCCTCATTGAGTTCCGCACCACTCTCCAGAGAGAAGAGGCATGCATCAGAACACTGTCAAAATTCACAGGGCAGTGTTGCAGAGGAGTCCACTGGCAAAGATGCCAACTGTTCACTGCTGCAGGAGTGTTATACAACATGAAAAGACCCCACCGTCACAGACCCGCACAAGGATATATACATCACCATCTCAGAGGTGCTGTTTGGTGAAATTAGATTAGTTTCCTTTCATTTGGACTGTAGCGACTGCTAATAGTATACCTGatactaaataaaataataatcaatc
>TU835372
gtttgttttactcattccattatatttgttttactcactccattatgtttgttttactcattccactatgtttgttttactcattCCACTATATTTGTTTTACTCATTCcactatgtttgttttactcattCCACTATGTGTGTTTTACTCATTCcactatgtttgttttactcattCCACTATGTTTGTTTAACTCATTCcactatgtttgttttactcattCCACTATGTTTGTCATAAAGCCAAACCAACAAGTGACACGTTTTCACACCAAATGATTCAAATTTACAGGATGAACAGGAGTGCAAATGCCTTCAACGTATTTACTGTACCAGTAAAAGCAGTCACATGTGAGACCACCGTTGCACGGTTTTGTCCCTACAAAAAACCTTCACGGCACTGTCCAAGGATGTATTGCCCCCGCAATTGTCTGCATGAGACTCGTGCCAGAGTCATTGGAACACAATGGTATTCAGATAAATCCAGTATATGTCGAGCAGCCATCCATGCTGGTGTCATTCAGAATGACTCAGGAGGCTACCTTGATGTGCAGCCCGTGGacaagaggagacagtacagCGGTAGCTATCAGAACGGAATCTCTTCAGAAAGGTAAGGGACATGAATAAGGGAAACGCGTGCCAATTGTGGGGTTTTGACTCTGTTGCAAATGCTTTTGGATGCGTAATGGCTAGGGACCAGGATTTTTTCTTGGTCGGCTCATGTGGTCAGAAAAACTCTTTGCCTTGTCagatttggggcggcaggtagcctagtggttagagtgttggactagtcactgaaaggttgtaagatcaaatcccagaaatcacaaggtaaaaatctgttgttctgcccctgaacaaggcagttaacccactgttcctaggcc

Function

NR:

description
cysteine-rich secretory protein LCCL domain-containing 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985992.1 False 3905 mRNA 0.43 15 65659289 65670369
XM_021613351.2 False 3910 mRNA 0.43 15 65659291 65670369
TU835372 True 893 TUCP 0.42 4 65666866 65668095

Neighbor

gene id symbol gene type direction distance location
pi15b LOC106569289 coding upstream 1392 65654439 ~ 65657897 (+)
LOC110530360 tmm70 coding upstream 57148 65599331 ~ 65602141 (+)
LOC110530359 LOC106569230 coding upstream 71659 65561693 ~ 65587630 (+)
LOC110530357 LOC106569232 coding upstream 139146 65511463 ~ 65520143 (+)
LOC110530354 LOC106569236 coding upstream 237310 65416276 ~ 65421979 (+)
LOC110530365 LOC106569227 coding downstream 6458 65676827 ~ 65680382 (+)
LOC110530367 LOC106569226 coding downstream 32894 65703263 ~ 65719986 (+)
LOC110529130 LOC106569225 coding downstream 59686 65730055 ~ 65735374 (+)
trnaa-ugc-27 NA coding downstream 134676 65805045 ~ 65805115 (+)
LOC110529132 LOC106569221 coding downstream 233815 65904184 ~ 65907219 (+)
G735656 NA non-coding upstream 14238 65644826 ~ 65645051 (+)
G735619 NA non-coding upstream 59044 65575105 ~ 65600245 (+)
G735573 NA non-coding upstream 167140 65491852 ~ 65492149 (+)
G735570 NA non-coding upstream 172142 65486781 ~ 65487147 (+)
G735569 LOC105024267 non-coding upstream 173982 65485020 ~ 65485307 (+)
G735678 NA non-coding downstream 18337 65688706 ~ 65750913 (+)
G735705 NA non-coding downstream 77407 65747776 ~ 65775479 (+)
G736463 NA non-coding downstream 224820 65895189 ~ 65895623 (+)
G736466 NA non-coding downstream 226434 65896803 ~ 65897040 (+)
G736477 NA non-coding downstream 239697 65910066 ~ 65911742 (+)
G735512 NA other upstream 256190 65402223 ~ 65403099 (+)
si:ch211-207d6.2 kiaa1217 other upstream 310792 65300995 ~ 65386540 (+)
G735064 NA other upstream 828386 64830624 ~ 64830903 (+)
G735047 NA other upstream 837244 64821615 ~ 64822045 (+)
si:ch211-106n13.3 LOC106569214 other downstream 453839 66100360 ~ 66125932 (+)
G737194 LOC106569203 other downstream 984293 66654662 ~ 66655753 (+)
kncn kncn other downstream 1029317 66699211 ~ 66704200 (+)
G737234 gs02 other downstream 1128204 66798573 ~ 66802080 (+)
G737783 NA other downstream 1500098 67170467 ~ 67215629 (+)

Expression


Co-expression Network