LOC110530365 (LOC106569227)


Basic Information

Item Value
gene id LOC110530365
gene name LOC106569227
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 65676827 ~ 65680382 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985994.1
TTACGGAAACCGGTTACCATCAATAAGGAAATGGAAGCAAACAGAGTAAAACGAGAGTTTATATTGACAAATTCAGGTTTTGCAACATAattggcagaatgaatacacccttgGAATCTAATTCTAAAACAAAGggATGACTGCTTTTGAAGGACAACCTTTGTGGCCATCCACACATCTATGAGATCCCCACATGTCTGAGGGACTTCCAAAATGAAGAAAATTAGTCTGAAAACAATACGAAAGTCATTCAACCTAAAAGgcaaagaggagggagaggatgttGTACCACAGCCAAATTCAGATACCAACTTTTCAACAGATTCAATGTTTGGAAAATGTTACAGCAAAGAACTTGTTTGTAACGATTTTGATCACGAGGAGAAGAAAGGCCGTAAGAACGGCTCAAAAAGTGAGAGTCTTATGGGATCACTGAAAAGGAGGCTTTCGGCAAAACAGAAAAGTAAAATAAAAGAAAGTTCCACATCCGTAACCTGTGAAGATGACACATTCTCGTGCTCCTCAGCACCCATTTTCTTTAACGACGTAAAATCACAGCACCATCTAAGATCTAGTAGTCACCATTATAGCCCCACGCCATGGGCCCTCAGGGCAGCGAATTCTGAGGAAACATGCCTTAGAATGGATGGGaaagtgaaagctatgatacaCTCATCAGACCCCAGCCCATCTCTTTatggcattcagaaagtattccctgACCCCCAGATGGATAGGCCTTTTCAGGATTCATCTGAGAGCACTGAGCCTCAGAATTGTGATTTGCATCTAGATATTGATGTTGAAAATGTGCCTGCGATTATTGGACTATCACCTCAGAACTATATTCACTATGCAATGCCTTTAGATGATGACCTTGAAAAAGGCTTGGATAATTCCTCTCCAATAGATGAGGTGCCTCAGCCCGAGGGCTTCCCTCCTCATGCAGCGGAAGACCCCATTGACCAGGAGGAGCTGATGTCACCAGACATATTCATGGACCCATCAGTGAATAGACTGCTCTATGAATCTGCAGGTGTCTTTATTCCAAACTCTAGAATagattctcctctctcccctttgctACCTCAGCTACCTGGCAGTCACATCCGAAGGAGTTTCCAAGTATATGGTGGTTCTTCTCATTCGCATGGTGCAGAGAGAGTAATGCACCATCTCAACTTTGATCCCAATTCAGCCCCTGGCGTTGGCAGGGTTTATGATGCTGTTCAGCACAGCGGGCCCATGATTGTAACCAGCCTTACAGTAGAGCTAAAGAAACTGGCCAAGCAGGGTTGGTACTGGGGTCCTATAACGCGTTGGGAAGCTGAGGAAAAACTTGCTAGCCTACCAGATGGGTCATTCTTGGTGCGAGACAGCTCCGATGATCGTTATCTTTTGAGCTTGAGCTTTCGGTCACAGGGTAAGACCCTCCACACCAGGATCGAACACTCCAATGGCAGTTTCAGTTTCTACGAACAGCCAGATGTGGAGGGTCACATATCAATAGTGGAACTCATTGAACATTCCATCAGAGATTCTGAGAGTGGAGCCTTCTGCTATTCACGATCTCGTACACCAGGGACTGCCACGTATCCTGTCAGACTGACAAACCCTATCTCAAGGTTTATGCAGGTGCGTTCCATGCAGTACCTCTGTCGGTTTGTCATCCGTCAGTACACACGGATTGACCTTATCCAGAAATTGCCTTTGCCAAACAAGATGAAAGATTACTTGCAGGAAAAGCACTACTGAAGAAGATCAATGAAACCCAGTTGGACTTtcttgcacattttagatcagcAACATAATGAAATAGGCCTAGTTTTTAATCTTTTGGACATGACCCTAATCCAGTGATGTGTCCACCAGCTAATGCCAGTAACTGACATGTCTTGTGAGCCATACAGTTATACTCCCCACCTCAAAGCCAAGGATTGAAGCTGAATCTTGATCAGCTTTTTGTTACATTGAATTATTTCTGTAAATTCTGTTTTGATAGACCAAGTGTTTTGTTATATAAAGCATGTAAAAAGAAAGAATTTCGTACACTCAATATGCTCCCAACAATTTGGGTACAACCAACATTTCAGCACTCAGTGCTTTCTTCAGGGTGTCAGTCAGCACCTCTGCAAACATTTTTGGGTGTGCGCCAACTCGTGTTTTTTACTAGACTGTCATATAAAGCACATACATTATCTAATCATTACTACACTCAGCTTTTCCTCATTATCCTATGTGGTTTGTTGTCCTACATTAAAAGAGTTTTTGTTAGGGGTCTGTAGCTAGTATGATTTTGATACCTGAAAGTCGCCTCTGCTGAGTCTTTAAAAGTTTTTTATTTTGCCTCATTGATGGTTACTCATTGCATGTGAATTACGTTGCGTATATGGAGAACTAATATTTGATCACCACACACCTGAAGCTGATTTGGGAGAACTAATCGGCATTGACTGTTTATAACCATATAGGGATAATGGCTTGTTTTTGTAGCCTTAACTTGACTGTTTGCCTGTCACTAAGTATAAGGAAAATTGCTTCACCTTGTTACTTTCCAGATCATGAGTTGCTACCTATGGTAAAATACTTGGTATCACCTAAACATACTTTTATGAACGGCTGGCTGTACACCGTTTTTATTGCACATCTTGAATGCAGTTAAAGGAGGGGTGTTTATTACTGTTAATAAAATACTTATTCAC
>XM_021613352.2
TCCTTACCTcttttcccacaatgcaatagtcatgtaaacaAAGGACAACGACAGGAAGGGAGACTGAAAAGttctagctagatagctagcattAGCTAAGTATAGCTACAAATGTGCAACTTATTAGCTACAGCAGTTCTGCAAGGAatattaaaacaaatatatataacgTTATTTAGCTAGCTTCCTAACCAGTTAGACATAGTTTGTATtgctttttctacattgtatcgTGTGGGATCTCTAaagccagttagctagctagatgccTGGCTAGCAGCCTGTCAGAAGCTAGCTAACGTCGTTAGGCAGTAACGTTAGCTGTCAAAACCAAGCCAAGTGCTTTGATTTCCCAGCGAACTCAAAATGCATCGATCTTGACAGTTTACTGGGAAAACCGTTTTTAACAGAAGATGACAGggATGACTGCTTTTGAAGGACAACCTTTGTGGCCATCCACACATCTATGAGATCCCCACATGTCTGAGGGACTTCCAAAATGAAGAAAATTAGTCTGAAAACAATACGAAAGTCATTCAACCTAAAAGgcaaagaggagggagaggatgttGTACCACAGCCAAATTCAGATACCAACTTTTCAACAGATTCAATGTTTGGAAAATGTTACAGCAAAGAACTTGTTTGTAACGATTTTGATCACGAGGAGAAGAAAGGCCGTAAGAACGGCTCAAAAAGTGAGAGTCTTATGGGATCACTGAAAAGGAGGCTTTCGGCAAAACAGAAAAGTAAAATAAAAGAAAGTTCCACATCCGTAACCTGTGAAGATGACACATTCTCGTGCTCCTCAGCACCCATTTTCTTTAACGACGTAAAATCACAGCACCATCTAAGATCTAGTAGTCACCATTATAGCCCCACGCCATGGGCCCTCAGGGCAGCGAATTCTGAGGAAACATGCCTTAGAATGGATGGGaaagtgaaagctatgatacaCTCATCAGACCCCAGCCCATCTCTTTatggcattcagaaagtattccctgACCCCCAGATGGATAGGCCTTTTCAGGATTCATCTGAGAGCACTGAGCCTCAGAATTGTGATTTGCATCTAGATATTGATGTTGAAAATGTGCCTGCGATTATTGGACTATCACCTCAGAACTATATTCACTATGCAATGCCTTTAGATGATGACCTTGAAAAAGGCTTGGATAATTCCTCTCCAATAGATGAGGTGCCTCAGCCCGAGGGCTTCCCTCCTCATGCAGCGGAAGACCCCATTGACCAGGAGGAGCTGATGTCACCAGACATATTCATGGACCCATCAGTGAATAGACTGCTCTATGAATCTGCAGGTGTCTTTATTCCAAACTCTAGAATagattctcctctctcccctttgctACCTCAGCTACCTGGCAGTCACATCCGAAGGAGTTTCCAAGTATATGGTGGTTCTTCTCATTCGCATGGTGCAGAGAGAGTAATGCACCATCTCAACTTTGATCCCAATTCAGCCCCTGGCGTTGGCAGGGTTTATGATGCTGTTCAGCACAGCGGGCCCATGATTGTAACCAGCCTTACAGTAGAGCTAAAGAAACTGGCCAAGCAGGGTTGGTACTGGGGTCCTATAACGCGTTGGGAAGCTGAGGAAAAACTTGCTAGCCTACCAGATGGGTCATTCTTGGTGCGAGACAGCTCCGATGATCGTTATCTTTTGAGCTTGAGCTTTCGGTCACAGGGTAAGACCCTCCACACCAGGATCGAACACTCCAATGGCAGTTTCAGTTTCTACGAACAGCCAGATGTGGAGGGTCACATATCAATAGTGGAACTCATTGAACATTCCATCAGAGATTCTGAGAGTGGAGCCTTCTGCTATTCACGATCTCGTACACCAGGGACTGCCACGTATCCTGTCAGACTGACAAACCCTATCTCAAGGTTTATGCAGGTGCGTTCCATGCAGTACCTCTGTCGGTTTGTCATCCGTCAGTACACACGGATTGACCTTATCCAGAAATTGCCTTTGCCAAACAAGATGAAAGATTACTTGCAGGAAAAGCACTACTGAAGAAGATCAATGAAACCCAGTTGGACTTtcttgcacattttagatcagcAACATAATGAAATAGGCCTAGTTTTTAATCTTTTGGACATGACCCTAATCCAGTGATGTGTCCACCAGCTAATGCCAGTAACTGACATGTCTTGTGAGCCATACAGTTATACTCCCCACCTCAAAGCCAAGGATTGAAGCTGAATCTTGATCAGCTTTTTGTTACATTGAATTATTTCTGTAAATTCTGTTTTGATAGACCAAGTGTTTTGTTATATAAAGCATGTAAAAAGAAAGAATTTCGTACACTCAATATGCTCCCAACAATTTGGGTACAACCAACATTTCAGCACTCAGTGCTTTCTTCAGGGTGTCAGTCAGCACCTCTGCAAACATTTTTGGGTGTGCGCCAACTCGTGTTTTTTACTAGACTGTCATATAAAGCACATACATTATCTAATCATTACTACACTCAGCTTTTCCTCATTATCCTATGTGGTTTGTTGTCCTACATTAAAAGAGTTTTTGTTAGGGGTCTGTAGCTAGTATGATTTTGATACCTGAAAGTCGCCTCTGCTGAGTCTTTAAAAGTTTTTTATTTTGCCTCATTGATGGTTACTCATTGCATGTGAATTACGTTGCGTATATGGAGAACTAATATTTGATCACCACACACCTGAAGCTGATTTGGGAGAACTAATCGGCATTGACTGTTTATAACCATATAGGGATAATGGCTTGTTTTTGTAGCCTTAACTTGACTGTTTGCCTGTCACTAAGTATAAGGAAAATTGCTTCACCTTGTTACTTTCCAGATCATGAGTTGCTACCTATGGTAAAATACTTGGTATCACCTAAACATACTTTTATGAACGGCTGGCTGTACACCGTTTTTATTGCACATCTTGAATGCAGTTAAAGGAGGGGTGTTTATTACTGTTAATAAAATACTTATTCAC

Function

NR:

description
suppressor of cytokine signaling 6-like

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process
GO:0040008 regulation of growth biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985994.1 False 2702 mRNA 0.42 2 65676827 65680382
XM_021613352.2 True 2988 mRNA 0.42 2 65677093 65680382

Neighbor

gene id symbol gene type direction distance location
LOC110530364 LOC106569228 coding upstream 6458 65659289 ~ 65670369 (+)
pi15b LOC106569289 coding upstream 18930 65654439 ~ 65657897 (+)
LOC110530360 tmm70 coding upstream 74686 65599331 ~ 65602141 (+)
LOC110530359 LOC106569230 coding upstream 89197 65561693 ~ 65587630 (+)
LOC110530357 LOC106569232 coding upstream 156684 65511463 ~ 65520143 (+)
LOC110530367 LOC106569226 coding downstream 22881 65703263 ~ 65719986 (+)
LOC110529130 LOC106569225 coding downstream 49673 65730055 ~ 65735374 (+)
trnaa-ugc-27 NA coding downstream 124663 65805045 ~ 65805115 (+)
LOC110529132 LOC106569221 coding downstream 223802 65904184 ~ 65907219 (+)
LOC110530371 NA coding downstream 237916 65918298 ~ 65920176 (+)
G735656 NA non-coding upstream 31776 65644826 ~ 65645051 (+)
G735619 NA non-coding upstream 76582 65575105 ~ 65600245 (+)
G735573 NA non-coding upstream 184678 65491852 ~ 65492149 (+)
G735570 NA non-coding upstream 189680 65486781 ~ 65487147 (+)
G735569 LOC105024267 non-coding upstream 191520 65485020 ~ 65485307 (+)
G735678 NA non-coding downstream 8324 65688706 ~ 65750913 (+)
G735705 NA non-coding downstream 67394 65747776 ~ 65775479 (+)
G736463 NA non-coding downstream 214807 65895189 ~ 65895623 (+)
G736466 NA non-coding downstream 216421 65896803 ~ 65897040 (+)
G736477 NA non-coding downstream 229684 65910066 ~ 65911742 (+)
G735512 NA other upstream 273728 65402223 ~ 65403099 (+)
si:ch211-207d6.2 kiaa1217 other upstream 328330 65300995 ~ 65386540 (+)
G735064 NA other upstream 845924 64830624 ~ 64830903 (+)
si:ch211-106n13.3 LOC106569214 other downstream 443826 66100360 ~ 66125932 (+)
G737194 LOC106569203 other downstream 974280 66654662 ~ 66655753 (+)
kncn kncn other downstream 1019304 66699211 ~ 66704200 (+)
G737234 gs02 other downstream 1118191 66798573 ~ 66802080 (+)
G737783 NA other downstream 1490085 67170467 ~ 67215629 (+)

Expression


Co-expression Network