trnaa-ugc-27


Basic Information

Item Value
gene id trnaa-ugc-27
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 65805045 ~ 65805115 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnaa-ugc-27
tcccgtgtggctcagttggtagagcatggcacttgcaatgccagggttgttggttcgattcccatggggaA

Function

NR:

description
Deoxyribonuclease gamma precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnaa-ugc-27 True 71 mRNA 0.54 1 65805045 65805115

Neighbor

gene id symbol gene type direction distance location
LOC110529130 LOC106569225 coding upstream 69671 65730055 ~ 65735374 (+)
LOC110530367 LOC106569226 coding upstream 85059 65703263 ~ 65719986 (+)
LOC110530365 LOC106569227 coding upstream 124663 65676827 ~ 65680382 (+)
LOC110530364 LOC106569228 coding upstream 134676 65659289 ~ 65670369 (+)
pi15b LOC106569289 coding upstream 147148 65654439 ~ 65657897 (+)
LOC110529132 LOC106569221 coding downstream 99069 65904184 ~ 65907219 (+)
LOC110530371 NA coding downstream 113183 65918298 ~ 65920176 (+)
LOC110530370 LOC106569219 coding downstream 125920 65931035 ~ 66005474 (+)
LOC110530372 LOC106569218 coding downstream 205636 66010751 ~ 66027208 (+)
mcm6l LOC106569286 coding downstream 229940 66035055 ~ 66040719 (+)
G735705 NA non-coding upstream 29566 65747776 ~ 65775479 (+)
G735678 NA non-coding upstream 54132 65688706 ~ 65750913 (+)
G735656 NA non-coding upstream 159994 65644826 ~ 65645051 (+)
G735619 NA non-coding upstream 204800 65575105 ~ 65600245 (+)
G735573 NA non-coding upstream 312896 65491852 ~ 65492149 (+)
G736463 NA non-coding downstream 90074 65895189 ~ 65895623 (+)
G736466 NA non-coding downstream 91688 65896803 ~ 65897040 (+)
G736477 NA non-coding downstream 104951 65910066 ~ 65911742 (+)
LOC110530377 LOC106569285 non-coding downstream 259425 66042234 ~ 66064749 (+)
LOC110530360 tmm70 other upstream 203148 65599331 ~ 65602141 (+)
G735512 NA other upstream 401946 65402223 ~ 65403099 (+)
si:ch211-207d6.2 kiaa1217 other upstream 456548 65300995 ~ 65386540 (+)
G735064 NA other upstream 974142 64830624 ~ 64830903 (+)
si:ch211-106n13.3 LOC106569214 other downstream 319093 66100360 ~ 66125932 (+)
G737194 LOC106569203 other downstream 849547 66654662 ~ 66655753 (+)
kncn kncn other downstream 894571 66699211 ~ 66704200 (+)
G737234 gs02 other downstream 993458 66798573 ~ 66802080 (+)
G737783 NA other downstream 1365352 67170467 ~ 67215629 (+)

Expression


Co-expression Network