LOC110529132 (LOC106569221)


Basic Information

Item Value
gene id LOC110529132
gene name LOC106569221
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 65904184 ~ 65907219 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986880.1
ATGCTAGCTATTCTCTGTGGTCAGTGGTCCTCTAGTGAAAGACTAGATGGCAAAACGGTTATCATTACTGGAGCCAATGCTGGCATTGGCAAAGAGACAGCAATGGACCTGGCAAAGAGAGGGGGCAGGATAATCTTGGCCTGCAGAGACTTGGGCAGAGCTGAGGCGGCACAGAGAGAGATCATTGAGAAATCTGGAAACCCCAACATTGTGACCAGAAAGATGGATTTGTCCGACACAAAGTCCATTAGAGAATTTGCAGAGTTAATCAACAGGGAGGAGAAACAAGTGAACATTCTTATCAACAATGCTGGGATCATGATGTGTCCATACTCTAAGACCGCAGATGGCTTTGAGATGCAGTTTGGAGTGAACCATTTGGGTCACTTCCTGCTCACCTTCCTGCTGATTGATCTGATAAAGAGATCCAGACCAGCCAGAATCATCAACCTGTCCTCCATGGCTCACAAATGGGGTTGGATCCAGCTAGAGGACATCAACAGTGAGAGGAGCTACCACTCCAGAAGAGCATATGGACAGAGCAAATTAGCAAACATCCTGAGTATACGGTCCCTGGCCAAGAGACTAAAAGACACTGGAGTGACAGTTTATGCAGTCCATCCAGGTATAGTGAGGACTGAGCTGAAGAGACACATGAATTTAGCCCTGCTGATATCCTGGAAGATTGTCAGACCTTTCACCAAAACTATTGTACAAGGTGCCCAGACCTCCATCTACTGTGCTGTGGAGCCAGAGCTGGAGACAGAGAGTGGTGGATATTACAGTGACTGTAAACCCTCCAGCTGTACCAGGGCTGCCAGGGATGATGAGATGGCTCAGAAACTATGGGAACTCAGCTGCCAAATGCTTGGGATAACATGGGACTGAACATCATCCTTGAATATCATTATAGATAGGCTAGAATATGTCAATTGTTTGAAAAGTGCATGCCTTGAATGCTTACACAATAGGTTATACTATGGAATCTATAGTTATACTATTGTTATGCATACTATGAATATGAATGCTGTATACGCAGAGCTTGACTTGGGATGAAATTGGTCCATTAGAATATGTACACAGAAATTCCCAAATGGCATTAGCCTATGTTATAGAGACCTGATTATTCAGAGTTAAGGGTTCATACTCAGTTTGACATATGGAATTTCATAACTTTTCCATTACTTTTAACCAAATGTCCATGACCATTAATTGGTGGCATCTCTATGTAGCCTACATGGAAAAAGTCAGCATGAATGTGATATTGACACTAGAAGGCTGCTGGTCTCCGATCACATGTAGCCCTACTAGCTCCTGTCGttgtgcccttgatcaaggcacttaaccccccacaAAGTAGAATAAATGCACTTTTAACAGGATCGGTGTCCCCCtgcaggacggttgagctaacatgcGCTAATatgattagcatgacgttgtaagtaacaagaccatttcccaggacatagacaaatCTGATAtgagca

Function

NR:

description
retinol dehydrogenase 12-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986880.1 True 1490 mRNA 0.44 7 65904184 65907219

Neighbor

gene id symbol gene type direction distance location
trnaa-ugc-27 NA coding upstream 99069 65805045 ~ 65805115 (+)
LOC110529130 LOC106569225 coding upstream 168810 65730055 ~ 65735374 (+)
LOC110530367 LOC106569226 coding upstream 184198 65703263 ~ 65719986 (+)
LOC110530365 LOC106569227 coding upstream 223802 65676827 ~ 65680382 (+)
LOC110530364 LOC106569228 coding upstream 233815 65659289 ~ 65670369 (+)
LOC110530371 NA coding downstream 11079 65918298 ~ 65920176 (+)
LOC110530370 LOC106569219 coding downstream 23816 65931035 ~ 66005474 (+)
LOC110530372 LOC106569218 coding downstream 103532 66010751 ~ 66027208 (+)
mcm6l LOC106569286 coding downstream 127836 66035055 ~ 66040719 (+)
LOC110530377 LOC106569285 coding downstream 135015 66042234 ~ 66064749 (+)
G736466 NA non-coding upstream 7144 65896803 ~ 65897040 (+)
G736463 NA non-coding upstream 8561 65895189 ~ 65895623 (+)
G735705 NA non-coding upstream 128705 65747776 ~ 65775479 (+)
G735678 NA non-coding upstream 153271 65688706 ~ 65750913 (+)
G735656 NA non-coding upstream 259133 65644826 ~ 65645051 (+)
G736477 NA non-coding downstream 2847 65910066 ~ 65911742 (+)
G736562 NA non-coding downstream 166106 66073325 ~ 66073533 (+)
G736572 NA non-coding downstream 190466 66097685 ~ 66097913 (+)
LOC110530360 tmm70 other upstream 302287 65599331 ~ 65602141 (+)
G735512 NA other upstream 501085 65402223 ~ 65403099 (+)
si:ch211-207d6.2 kiaa1217 other upstream 555687 65300995 ~ 65386540 (+)
G735064 NA other upstream 1073281 64830624 ~ 64830903 (+)
si:ch211-106n13.3 LOC106569214 other downstream 216989 66100360 ~ 66125932 (+)
G737194 LOC106569203 other downstream 747443 66654662 ~ 66655753 (+)
kncn kncn other downstream 792467 66699211 ~ 66704200 (+)
G737234 gs02 other downstream 891354 66798573 ~ 66802080 (+)
G737783 NA other downstream 1263248 67170467 ~ 67215629 (+)

Expression


Co-expression Network