LOC110530371


Basic Information

Item Value
gene id LOC110530371
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 65918298 ~ 65920176 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613368.2
CCTCCAAATGGCTTGGTAAACACATATTGGTGGCCAAAAAGCAGTGATCCAATTTCTCAAAAAAATCGTTCTCCCACTGGGGCAGAATCATCTCAGGTGGTTAGGCTCGGGAGACTTCACCACACCTGTAGCAGCAGGTACAATAGGCTTAATCATCCTCACTCTCGTCAGGTTCGATTACTGAGCATTCACTAGCAACCGACTCCATTTTGAGGTTATCAGGGGAGCATGTAGCCTAACCATTCCTAGGCATTAACGTTAGTTTATTCATAATAAGTACAGGTTTGTAGCCCAGTCAGAAACCCCAACTATTTCaacaatgtattttttaaaatccGATTTAAACCTTATGCCGGCTCCTAACCTTAAGACCAAAAGGCTACGTTTTGTTTTCAGAATATTGTTGTTACGATATAGCCAATCTCGATTTTGTGGCTGTGACAACCAAAAACTTTACTTGGCGCCACTTTTCCTGTTCGCGTGCATCAAGAGTCCGCGTCATCCTTCCTAATCCCATCCGGGTTATAATCTTTTTCGCATTTACACGAAGTCGACGTCAGCTTTCGAGTTAGAACATACGTGTCTAAGTATTCCGTAGGACAAAAACCTTTTCAACATGGACCAGGTAATGCAATTTGTGGAGCCCAGTCGGCAGTTTGTGAAGGACTCGATAAGGCTTGTGAAGAGGTGTACCAAGCCAGACAGAAAAGAATTCTCAAAGATTGCCATGGCCACAGCGATAGGTTTTGCTATCATGGGCTTCATTGGTTTCTTCGTCAAACTCATCCACATCCCAATCAACAACATCATTGTTGGTGGTTGAATATCTCCCCTGGCTGATTAACTACCTGCAACTGGACATGGGATTAAAGTGTTAACATTTTTTGTATATTATAATTATCTTCAGTTCATATTTGTTTGCTTTGTAAATAAATTTGGATTAATAAGAGA
>XM_021613370.2
AATGGCTTGGTAAACACATATTGGTGGCCAAAAAGCAGTGATCCAATTTCTCAAAAAAATCGTTCTCCCACTGGGGCAGAATCATCTCAGGTGGTTAGGCTCGGGAGACTTCACCACACCTGTAGCAGCAGTAGGACAAAAACCTTTTCAACATGGACCAGGTAATGCAATTTGTGGAGCCCAGTCGGCAGTTTGTGAAGGACTCGATAAGGCTTGTGAAGAGGTGTACCAAGCCAGACAGAAAAGAATTCTCAAAGATTGCCATGGCCACAGCGATAGGTTTTGCTATCATGGGCTTCATTGGTTTCTTCGTCAAACTCATCCACATCCCAATCAACAACATCATTGTTGGTGGTTGAATATCTCCCCTGGCTGATTAACTACCTGCAACTGGACATGGGATTAAAGTGTTAACATTTTTTGTATATTATAATTATCTTCAGTTCATATTTGTTTGCTTTGTAAATAAATTTGGATTAATAAGAGA
>XM_021613369.2
AACTTTACTTGGCGCCACTTTTCCTGTTCGCGTGCATCAAGAGTCCGCGTCATCCTTCCTAATCCCATCCGGGTTATAATCTTTTTCGCATTTACACGAAGTCGACGTCAGCTTTCGAGTTAGAACATACGTGTCTAAGTATTCCGGACAAAAACCTTTTCAACATGGACCAGGTAATGCAATTTGTGGAGCCCAGTCGGCAGTTTGTGAAGGACTCGATAAGGCTTGTGAAGAGGTGTACCAAGCCAGACAGAAAAGAATTCTCAAAGATTGCCATGGCCACAGCGATAGGTTTTGCTATCATGGGCTTCATTGGTTTCTTCGTCAAACTCATCCACATCCCAATCAACAACATCATTGTTGGTGGTTGAATATCTCCCCTGGCTGATTAACTACCTGCAACTGGACATGGGATTAAAGTGTTAACATTTTTTGTATATTATAATTATCTTCAGTTCATATTTGTTTGCTTTGTAAATAAATTTGGATTAATAAGAGA
>TU836321
GCGTCATCCTTCCTAATCCCATCCGGGTTATAATCTTTTTCGCATTTACACGAAGTCGACGTCAGCTTTCGAGTTAGAACATACGTGTCTAAGTATTCCGTAGGACAAAAACCTTTTCAACATGGACCAGGTAATGCAATTTGTGGAGCCCAGTCGGCAGTTTGTGAAGGACTCGATAAGGCTTGTGAAGAGGTGTACCAAGCCAGACAGAAAAGAATTCTCAAAGATTGCCATGGCCACAGCGATAGGTTTTGCTATCATGGGCTTCATTGGTTTCTTCGTCAAACTCATCCACATCCCAATCAACAACATCATTGTTGGTGGTTGAATATCTCCCCTGGCTGATTAACTACCTGCAACTGGACATGGGATTAAAGTGTTAACATTTTTTGTATATTATAATTATCTTCAGTTCATA
>TU836322
GCGTCATCCTTCCTAATCCCATCCGGGTTATAATCTTTTTCGCATTTACACGAAGTCGACGTCAGCTTTCGAGTTAGAACATACGTGTCTAAGTATTCCGGACAAAAACCTTTTCAACATGGACCAGGTAATGCAATTTGTGGAGCCCAGTCGGCAGTTTGTGAAGGACTCGATAAGGCTTGTGAAGAGGTGTACCAAGCCAGACAGAAAAGAATTCTCAAAGATTGCCATGGCCACAGCGATAGGTTTTGCTATCATGGGCTTCATTGGTTTCTTCGTCAAACTCATCCACATCCCAATCAACAACATCATTGTTGGTGGTTGAATATCTCCCCTGGCTGATTAACTACCTGCAACTGGACATGGGATTAAAGTGTTAACATTTTTTGTATATTATAATTATCTTCAGTTCATA

Function

NR:

description
transport protein Sec61 subunit gamma

GO:

id name namespace
GO:0071806 protein transmembrane transport biological_process
GO:0006614 SRP-dependent cotranslational protein targeting to membrane biological_process
GO:0006412 translation biological_process
GO:0002479 antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent biological_process
GO:0030176 integral component of endoplasmic reticulum membrane cellular_component
GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613368.2 False 951 mRNA 0.41 4 65918298 65920176
XM_021613370.2 False 487 mRNA 0.41 4 65918304 65920176
XM_021613369.2 False 499 mRNA 0.41 4 65918747 65920176
TU836321 False 418 lncRNA 0.42 4 65918793 65920138
TU836322 True 415 lncRNA 0.42 4 65918793 65920138

Neighbor

gene id symbol gene type direction distance location
LOC110529132 LOC106569221 coding upstream 11079 65904184 ~ 65907219 (+)
trnaa-ugc-27 NA coding upstream 113183 65805045 ~ 65805115 (+)
LOC110529130 LOC106569225 coding upstream 182924 65730055 ~ 65735374 (+)
LOC110530367 LOC106569226 coding upstream 198312 65703263 ~ 65719986 (+)
LOC110530365 LOC106569227 coding upstream 237916 65676827 ~ 65680382 (+)
LOC110530370 LOC106569219 coding downstream 10859 65931035 ~ 66005474 (+)
LOC110530372 LOC106569218 coding downstream 90575 66010751 ~ 66027208 (+)
mcm6l LOC106569286 coding downstream 114879 66035055 ~ 66040719 (+)
LOC110530377 LOC106569285 coding downstream 122058 66042234 ~ 66064749 (+)
exoc3 LOC106569216 coding downstream 145836 66066012 ~ 66072799 (+)
G736477 NA non-coding upstream 6556 65910066 ~ 65911742 (+)
G736466 NA non-coding upstream 21258 65896803 ~ 65897040 (+)
G736463 NA non-coding upstream 22675 65895189 ~ 65895623 (+)
G735705 NA non-coding upstream 142819 65747776 ~ 65775479 (+)
G735678 NA non-coding upstream 167385 65688706 ~ 65750913 (+)
G736562 NA non-coding downstream 153149 66073325 ~ 66073533 (+)
G736572 NA non-coding downstream 177509 66097685 ~ 66097913 (+)
G736575 NA non-coding downstream 179291 66099467 ~ 66099675 (+)
G736578 NA non-coding downstream 187112 66107288 ~ 66107524 (+)
LOC110530364 LOC106569228 other upstream 250203 65659289 ~ 65670369 (+)
LOC110530360 tmm70 other upstream 316401 65599331 ~ 65602141 (+)
G735512 NA other upstream 515199 65402223 ~ 65403099 (+)
si:ch211-207d6.2 kiaa1217 other upstream 569801 65300995 ~ 65386540 (+)
G735064 NA other upstream 1087395 64830624 ~ 64830903 (+)
si:ch211-106n13.3 LOC106569214 other downstream 204032 66100360 ~ 66125932 (+)
G737194 LOC106569203 other downstream 734486 66654662 ~ 66655753 (+)
kncn kncn other downstream 779510 66699211 ~ 66704200 (+)
G737234 gs02 other downstream 878397 66798573 ~ 66802080 (+)
G737783 NA other downstream 1250291 67170467 ~ 67215629 (+)

Expression


Co-expression Network