LOC110530372 (LOC106569218)


Basic Information

Item Value
gene id LOC110530372
gene name LOC106569218
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 66010751 ~ 66027208 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613371.2
TCTTTCTGCAAACACATTTGTAAAGTGTTATTTCTATGCACTGCCGCAGCTATTGTTGTGGCAGTGAAAATTAAATAATTTGGAGGGAAACGGGGTTGTGTCTTTGAAAAGGAGTATTCCAATACTTTACTCAGATTAAAAACGTAATATTTGGTTCTAATTGGTACTGTTTTGTTTCATTTGGAGCCAAGAACGAGCACTACACGATGGTTTCTTGGCAGGATGCTCTCCTGATTGCTACTTGAAGGGGGTCTTCCAAGATCGTCTGCCACTCCAAAGAGAAGACCCCACCTTGTCTCTGTGTTACATTGTGGCCTCTCTCTTTATCACCTTATGGAGGAGTAGCTCTTGACGGTTTCATTACAAGCAATAAAAGAAGACGTGGCACGGAGCATCTGAAAGGAGAGCAACAACAAGCAAAGAGACAATGTCATCCAACAGAAGCCAGAACCCTCATGGGCTCAAGCAGATTGGCCTGGACCAGATCTGGGATGACCTGCGAGCAGGAATACAGCAGGTGTACACCAGACAGAGCATGGCCAAATCACGATATATGGAACTGTACACACATGTTTATAACTACTGTACCAGTGTGCATCAGTCCAATCAGGCCCGTGGGGCAGGGCCCCCTCCATCCAAGCCCTCCAAAAAGGCCCCCACCCCAGGAGGGGCCCAGTTTGTGGGCCTGGAGCTCTACAAGAGACTCAAGGAGTTCCTCAAGAACTACCTGACCAACCTGCTCAAGGATGGAGAAGACCTGATGGATGAGAGTGTATTAAAGTTCTACACACAGCAGTGGGAAGACTACAGATTCTCCAGCAAAGTGCTGAATGGTATCTGTGCCTACCTCAACCGGCACTGGGTCCGCCGCGAGTGTGACGAGGGGCGCAAAGGGATATATGAAATCTACTCCctCGCGTTGGTGACATGGAGAGAATGCCTTTTCAGACCTTTGAATAAACAAGTCACAAATGCTGTATTGAAGCTCATTGAGAAGGAACGTAACGGAGAGACCATCAACACTAGGCTAATCAGTGGAGTCGTCCAGTCCTATGTTGAGTTGGGTCTCAATGAGGATGATGCCTTTGCCAAAGGCCCCACGTTGTCAGTCTACAAAGAGTACTTCGAGACTCAGTTCTTGGCGGACACCGAGCGCTTTTACACACGAGAGAGCACAGAGTTCCTGCAACAAAATCCAGTTACTGAATACATGAAAAAGgctgaggCGCGTCTGTTAGAGGAGCAGCGGAGGGTGCAGGTGTACCTCCATGAGAGCACGCAGGACGAGCTGGCCCGCAAGTGTGAGCAGGTGCTCATTGAGAAGCACCTGGAGATCTTCCACACAGAGTTCCAGAACCTTCTGGACGCTGACAAAAATGAAGACCTTGGGCGGATGTACAATTTGGTGTCCCGGATCACTGATGGATTGGGAGAGCTGAAGAAACTCCTGGAGACGCACATATACAACCAGGGCCTTGCTGCTATAGAGAAGTGTGGAGAAGCAGCTCTCAATGATCCCAAAATGTATGTCCAGACCATCTTAGACGTCCACAAGAAGTATAATGCTTTAGTAATGTCAGCGTTCAACAACGATGCTGGTTTTGTTGCTGCTCTGGACAAGGCCTGTGGACGCTTCATAAACAACAATGCTGTGACCAAGATGGTGCAGTCATCCAGCAAATCCCCAGAGCTACTGGCTAGATACTGTGACTCTCTGCTGAAGAAGAGCTCAAAGAACCCAGAGGAGGCAGAGCTAGAAGACACACTAAACCAAGTGATGGTGGTCTTTAAGTACATAGAGGACAAAGATGTGTTCCAGAAGTTCTATGCCAAGATGCTGGCTAAGCGGTTAGTCCATCAGAACAGCGCCAGTGATGATGCTGAAGCCAGTATGATCTCCAAACTAAAGCAAGCGTGCGGCTTCGAGTACACCTCCAAACTCCAACGCATGTTCCAGGACATCGGAGTCAGCAAAGACCTAAATGAACAATTTAAAAAGCACCTCACCAACTCTGAGCCTTTGGACTtGGACTTCAGCATCCAGGTCCTCAGTTCTGGTTCCTGGCCCTTCCAGCAGTCCTGTACATTTGCCTTGCCCTCTGAGCTGGAGAGGAGTTACCAAAGGTTCACTGCCTTCTACGCCAGCAGACACAGCGGGCGCAAGCTGACCTGGCTCTACCACCTGTCCAAAGGAGAGCTGGTCACCAACTGCTTTAAGAACAGATACACTCTGCAGgCTTCTACCTTCCAGATGGCCATCCTATTGCAGTACAATGCTGAGGACGTCTACACAGTGCAGCAGCTCGCAGACAGCACACAGATCAAGATAGACATTTTGGTGCAGGTGTTGCAAATCTTGTTGAAGTCTAAATTGCTGGTCCTGGAGGATGAGAATGCAAATGTGGATGAAGTAGAGTTCAAACCAGACACCTTAATAAAACTCTTCCTGGGATACAAAAACAAAAAACTTCGGGTGAACATTAACGTGCCAATGAAGACAGAGCAGAAGCAGGAGCAGGAAACCACTCACAAGAacatagaggaggacaggaaaCTGTTAATACAGGCTGCCATTGTGAGAATCATGAAGATGCGCAAAGTGCTAAAACATCAGCAACTCCTGGCAGAGGTGCTGAATCAGCTGTCATCCAGGTTTAAACCAAGAGTTCCCGTCATCAAGAAATGTATCGACATCCTGATCGAGAAGGAGTACCTGGAGCGTGTCGACGGAGAGAAAGACACTTACAGCTACTTGGCTTAAAACCTTTTCATtgccctccctcctttctttttTTAAAGTTGTCTTTTGAGTAATTTTAACATCATTCCTTTTGACATTTGGCCAATGTTGTCAGGAATGCGAGCACAGAAggagaaaaagaagaaaaaagtTGTCAATCATCATCAAGGTGGTTTGCGAAAGCTGGACTTCCCTTTAAACTCTGACATTATGGGATAGCTGCTCGCCCAGTGTTTGTTTGAAGATCCCATCTGAACTGCTCAGGATCGACAGATACATTTTGATATGTAAATATCGACAGAGACCTTTACCTCTTTACTTTTATCTTGCAAAGTTAATAACATACAAAAAAAACTATCAAAACCCTTCACACCGAGGGTTGCATGCTACTGCCTATCTGCATTTAAGAAGCAAAAAGACGTAATAGATGAGAAGCTATTAAGACACTGCTGCTTTATGTGGCAGTAGCAAATTATGAACGTATGTTTTAAAAAAAGATGAGTGCAATTTTAGCTGCACTTCCAGAAAGCGATCTGTGTTTG
>XM_021613372.2
TAGACAACTCTGTCCCTGTGATAAATTGATGAATACTTGGGCCTGGACTGAAATGGTTTCTTGGCAGGATGCTCTCCTGATTGCTACTTGAAGGGGGTCTTCCAAGATCGTCTGCCACTCCAAAGAGAAGACCCCACCTTGTCTCTGTGTTACATTGTGGCCTCTCTCTTTATCACCTTATGGAGGAGTAGCTCTTGACGGTTTCATTACAAGCAATAAAAGAAGACGTGGCACGGAGCATCTGAAAGGAGAGCAACAACAAGCAAAGAGACAATGTCATCCAACAGAAGCCAGAACCCTCATGGGCTCAAGCAGATTGGCCTGGACCAGATCTGGGATGACCTGCGAGCAGGAATACAGCAGGTGTACACCAGACAGAGCATGGCCAAATCACGATATATGGAACTGTACACACATGTTTATAACTACTGTACCAGTGTGCATCAGTCCAATCAGGCCCGTGGGGCAGGGCCCCCTCCATCCAAGCCCTCCAAAAAGGCCCCCACCCCAGGAGGGGCCCAGTTTGTGGGCCTGGAGCTCTACAAGAGACTCAAGGAGTTCCTCAAGAACTACCTGACCAACCTGCTCAAGGATGGAGAAGACCTGATGGATGAGAGTGTATTAAAGTTCTACACACAGCAGTGGGAAGACTACAGATTCTCCAGCAAAGTGCTGAATGGTATCTGTGCCTACCTCAACCGGCACTGGGTCCGCCGCGAGTGTGACGAGGGGCGCAAAGGGATATATGAAATCTACTCCctCGCGTTGGTGACATGGAGAGAATGCCTTTTCAGACCTTTGAATAAACAAGTCACAAATGCTGTATTGAAGCTCATTGAGAAGGAACGTAACGGAGAGACCATCAACACTAGGCTAATCAGTGGAGTCGTCCAGTCCTATGTTGAGTTGGGTCTCAATGAGGATGATGCCTTTGCCAAAGGCCCCACGTTGTCAGTCTACAAAGAGTACTTCGAGACTCAGTTCTTGGCGGACACCGAGCGCTTTTACACACGAGAGAGCACAGAGTTCCTGCAACAAAATCCAGTTACTGAATACATGAAAAAGgctgaggCGCGTCTGTTAGAGGAGCAGCGGAGGGTGCAGGTGTACCTCCATGAGAGCACGCAGGACGAGCTGGCCCGCAAGTGTGAGCAGGTGCTCATTGAGAAGCACCTGGAGATCTTCCACACAGAGTTCCAGAACCTTCTGGACGCTGACAAAAATGAAGACCTTGGGCGGATGTACAATTTGGTGTCCCGGATCACTGATGGATTGGGAGAGCTGAAGAAACTCCTGGAGACGCACATATACAACCAGGGCCTTGCTGCTATAGAGAAGTGTGGAGAAGCAGCTCTCAATGATCCCAAAATGTATGTCCAGACCATCTTAGACGTCCACAAGAAGTATAATGCTTTAGTAATGTCAGCGTTCAACAACGATGCTGGTTTTGTTGCTGCTCTGGACAAGGCCTGTGGACGCTTCATAAACAACAATGCTGTGACCAAGATGGTGCAGTCATCCAGCAAATCCCCAGAGCTACTGGCTAGATACTGTGACTCTCTGCTGAAGAAGAGCTCAAAGAACCCAGAGGAGGCAGAGCTAGAAGACACACTAAACCAAGTGATGGTGGTCTTTAAGTACATAGAGGACAAAGATGTGTTCCAGAAGTTCTATGCCAAGATGCTGGCTAAGCGGTTAGTCCATCAGAACAGCGCCAGTGATGATGCTGAAGCCAGTATGATCTCCAAACTAAAGCAAGCGTGCGGCTTCGAGTACACCTCCAAACTCCAACGCATGTTCCAGGACATCGGAGTCAGCAAAGACCTAAATGAACAATTTAAAAAGCACCTCACCAACTCTGAGCCTTTGGACTtGGACTTCAGCATCCAGGTCCTCAGTTCTGGTTCCTGGCCCTTCCAGCAGTCCTGTACATTTGCCTTGCCCTCTGAGCTGGAGAGGAGTTACCAAAGGTTCACTGCCTTCTACGCCAGCAGACACAGCGGGCGCAAGCTGACCTGGCTCTACCACCTGTCCAAAGGAGAGCTGGTCACCAACTGCTTTAAGAACAGATACACTCTGCAGgCTTCTACCTTCCAGATGGCCATCCTATTGCAGTACAATGCTGAGGACGTCTACACAGTGCAGCAGCTCGCAGACAGCACACAGATCAAGATAGACATTTTGGTGCAGGTGTTGCAAATCTTGTTGAAGTCTAAATTGCTGGTCCTGGAGGATGAGAATGCAAATGTGGATGAAGTAGAGTTCAAACCAGACACCTTAATAAAACTCTTCCTGGGATACAAAAACAAAAAACTTCGGGTGAACATTAACGTGCCAATGAAGACAGAGCAGAAGCAGGAGCAGGAAACCACTCACAAGAacatagaggaggacaggaaaCTGTTAATACAGGCTGCCATTGTGAGAATCATGAAGATGCGCAAAGTGCTAAAACATCAGCAACTCCTGGCAGAGGTGCTGAATCAGCTGTCATCCAGGTTTAAACCAAGAGTTCCCGTCATCAAGAAATGTATCGACATCCTGATCGAGAAGGAGTACCTGGAGCGTGTCGACGGAGAGAAAGACACTTACAGCTACTTGGCTTAAAACCTTTTCATtgccctccctcctttctttttTTAAAGTTGTCTTTTGAGTAATTTTAACATCATTCCTTTTGACATTTGGCCAATGTTGTCAGGAATGCGAGCACAGAAggagaaaaagaagaaaaaagtTGTCAATCATCATCAAGGTGGTTTGCGAAAGCTGGACTTCCCTTTAAACTCTGACATTATGGGATAGCTGCTCGCCCAGTGTTTGTTTGAAGATCCCATCTGAACTGCTCAGGATCGACAGATACATTTTGATATGTAAATATCGACAGAGACCTTTACCTCTTTACTTTTATCTTGCAAAGTTAATAACATACAAAAAAAACTATCAAAACCCTTCACACCGAGGGTTGCATGCTACTGCCTATCTGCATTTAAGAAGCAAAAAGACGTAATAGATGAGAAGCTATTAAGACACTGCTGCTTTATGTGGCAGTAGCAAATTATGAACGTATGTTTTAAAAAAAGATGAGTGCAATTTTAGCTGCACTTCCAGAAAGCGATCTGTGTTTG

Function

NR:

description
PREDICTED: cullin-1-like

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0031461 cullin-RING ubiquitin ligase complex cellular_component
GO:0031625 ubiquitin protein ligase binding molecular_function

KEGG:

id description
K03347 CUL1, CDC53; cullin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613371.2 False 3282 mRNA 0.46 22 66010751 66027208
XM_021613372.2 True 3128 mRNA 0.47 22 66011827 66027208

Neighbor

gene id symbol gene type direction distance location
LOC110530370 LOC106569219 coding upstream 5277 65931035 ~ 66005474 (+)
LOC110530371 NA coding upstream 90575 65918298 ~ 65920176 (+)
LOC110529132 LOC106569221 coding upstream 103532 65904184 ~ 65907219 (+)
trnaa-ugc-27 NA coding upstream 205636 65805045 ~ 65805115 (+)
LOC110529130 LOC106569225 coding upstream 275377 65730055 ~ 65735374 (+)
mcm6l LOC106569286 coding downstream 7847 66035055 ~ 66040719 (+)
LOC110530377 LOC106569285 coding downstream 15026 66042234 ~ 66064749 (+)
exoc3 LOC106569216 coding downstream 38804 66066012 ~ 66072799 (+)
si:ch211-106n13.3 LOC106569214 coding downstream 73152 66100360 ~ 66125932 (+)
LOC110530382 ccr3 coding downstream 98805 66126013 ~ 66128501 (+)
G736477 NA non-coding upstream 99009 65910066 ~ 65911742 (+)
G736466 NA non-coding upstream 113711 65896803 ~ 65897040 (+)
G736463 NA non-coding upstream 115128 65895189 ~ 65895623 (+)
G735705 NA non-coding upstream 235272 65747776 ~ 65775479 (+)
G736562 NA non-coding downstream 46117 66073325 ~ 66073533 (+)
G736572 NA non-coding downstream 70477 66097685 ~ 66097913 (+)
G736575 NA non-coding downstream 72259 66099467 ~ 66099675 (+)
G736578 NA non-coding downstream 80080 66107288 ~ 66107524 (+)
LOC110530364 LOC106569228 other upstream 342656 65659289 ~ 65670369 (+)
LOC110530360 tmm70 other upstream 408854 65599331 ~ 65602141 (+)
G735512 NA other upstream 607652 65402223 ~ 65403099 (+)
si:ch211-207d6.2 kiaa1217 other upstream 662254 65300995 ~ 65386540 (+)
G735064 NA other upstream 1179848 64830624 ~ 64830903 (+)
G737194 LOC106569203 other downstream 627454 66654662 ~ 66655753 (+)
kncn kncn other downstream 672478 66699211 ~ 66704200 (+)
G737234 gs02 other downstream 771365 66798573 ~ 66802080 (+)
G737783 NA other downstream 1143259 67170467 ~ 67215629 (+)

Expression


Co-expression Network