LOC110530377 (LOC106569285)


Basic Information

Item Value
gene id LOC110530377
gene name LOC106569285
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 66042234 ~ 66064749 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613376.2
ATGATTCCACCTGGGGACTGCTTATATgctgggaggaagagaaggaagccCATCCAAAAACAAAAACAGACAGCGGCCAGCCAGAAGACCAACCCGTCTAAGAGGCACCGTGACCGTCTGAATGCAGAGCTGGAGCGGTTGGCCAGTCTCCTACCCTTCACCCCAGACATCATCTCCAAACTGGACAAGCTCTCAGTGCTCCGCCTCAGCGTCAGCTACCTCCGGGTCAAAAGCTTCTTTCAAGCCATCCAGGAGAAGCCATGCAGAAAGCACATCATGGAGTCGCCTGTGAACCACCAGGATACCAGGAAAGGGAGCCTGTCCATGGGGACCCCGGGGACCAGCAGCAGCGTGGTGGAGAGTGACCTCTTACTGGAGTCCCTGACTGGGTTTGCCTTGGTGGTGAGCACAGATGGGTTGATCTTCTACACCTCCACCTCCATTGTTGACTACTTGGGCTTTCATCAGACGGATGTGATGCACCAGAATGTTTTTGATTATATCCATGTGGAAGAGCGGCAGGAGTTCAGAAGACAACTCCACTGGGCCATGAACCCCGGGACCCAGGGGGCCTCCCTGGACCAGCACTCAGCCACAGGAATTGGTGATGACTTTGTGATGAGCAGTCTCTTCCATGCCCAGGAGCCTGACGGTGTTCCTCTAGAGCGCACCTCCTTCCTCACGCGCTGTTTCATTTCCCGAGTCCGTTGCTTGCTGGACAGCACCTCAGGCTTCCTGAGCATGCAGTTCCAGGGCAGCCTGAAGTTCCTGCAGGGCCAGAAGCAAAAGACAGACTCCGGGGCACTGCTGCCCCCCCAGCTGGCCCTGTTCTGTGTGGCCGTGCCCCTCATGATTCCCTCCATCACAGAGCCGAAGATGAAGAGCACGACGATCAGGAACAAGAACAAGGGCCCCGTCATCCCCACACCAGATAAGCACAGTGACAAGAGGCATCGAAACACCAGAGGTTCATGTGACAGCAGTGACGTATTGCTTCTGAATTGGTCCAGCAGCTCCAGCAGAGACCCTTGCCACTATAGCCCATGGACACCCCTCTCCAAAGACGGCATCAGGTATAGGAACAATGGTTACTACACCCAGGAGGAGCCCATCAACTTCTGCCTGTCTTCCATGGGTGGTGGGCCCAAAGCTCAGAGCGTTAATCATCCATGGGACATCCGCACCGGGTCCACCATAAGAAAGGGCCCCAGCAGCAGCTACATACCATGCAGACAAGGCAAGTACAACAACCTGGGGAAGTCTGGACCTTACAGGATGTCTCCAGGATATCACGCTAAAAGACAGGATGCCTCTCAGAACAAACTGTACGGAGGCCTCCACAGCCCAGAGGCGGAGAGCTTCTGTGAGGACGGCATGAAGGCAGACAACAACTACATGGGCGGCCATCTTGACTGTTACAATGGCATGGTGTTGCCTGAGACAGCCATAAAGACAGAGCAGGACTCTGACTCTGAGAACGGTTGCAACATCTACAGCATGCCCCACAACCTAGCCTGGGTGGGGAATGAGAAGCGCTACAGCATGGCCTACTCAGAAGAACCACAGGTGAAGTCGGAGGCTGACTACCATGACCAATACACCACCTGCCAAAGGAACAAGACCAACATGAGCCCAACGCTCAACGGATACCACAAATACTTATACCCAGTGGGGAGCAGGGCTCAGAAGGATCATAGGATACCTCACTCAGACCCTCTGTGTAGCAGTCAGGGAGCAAACTGTATGGTCAGCAATGTGTATGGGAATGGTACTGTGGAGCATAAAGGCTACATACAGCAAGACAACAAACTGAACTACGAGTTCAGGAATCATCTGGTCCACTCTATAAAGAGGGAACCCATGGACTCACCTCCTTGGTCAGACAATGGACATGACATTAGCCAAATACCCATGCAGAGAAATATGATTCACAACTGTGCATTGAATGATATTGTACACAAACCAAACCCATATATCTACATGCAATGAGGTCAATGGAAAATCTCATAAACCATCTGGGCACCACCTTGCTTCTTTATTGTATTGATGCATAATATGGCAGGGTGGGTAGTTATTTAATCTCAGGTAATCAGCAGTGTTACAAAGCAAAAATATATGGAAGCAAAGACAGGTGTTTTAATAAGGACTTTGTACATAAGACACACAAGATAAATATAACTTTTTTTCAGAtttacaggaccagtcaaaagtttggacacctactaattccatggtttttctttattttttacattgtagaataatagtgaggacatcaaaacta
>TU836379
TTTAATCTCAGGTAATCAGCAGTGTTACAAAGCAAAAATATATGGAAGCAAAGACAGGTGTTTTAATAAGGACTTTGTACATAAGACACACAAGATAAATATAACTTTTTTTCAGAtttacaggaccagtcaaaagtttggacacctactaattccatggtttttctttattttttacattgtagaataatagtgagga

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0050794 regulation of cellular process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613376.2 False 2284 mRNA 0.51 8 66042234 66064749
TU836379 True 199 lncRNA 0.30 1 66064540 66064738

Neighbor

gene id symbol gene type direction distance location
mcm6l LOC106569286 coding upstream 1515 66035055 ~ 66040719 (+)
LOC110530372 LOC106569218 coding upstream 15026 66010751 ~ 66027208 (+)
LOC110530370 LOC106569219 coding upstream 36760 65931035 ~ 66005474 (+)
LOC110530371 NA coding upstream 122058 65918298 ~ 65920176 (+)
LOC110529132 LOC106569221 coding upstream 135015 65904184 ~ 65907219 (+)
exoc3 LOC106569216 coding downstream 1263 66066012 ~ 66072799 (+)
si:ch211-106n13.3 LOC106569214 coding downstream 35611 66100360 ~ 66125932 (+)
LOC110530382 ccr3 coding downstream 61264 66126013 ~ 66128501 (+)
LOC110530963 LOC106569213 coding downstream 66353 66131102 ~ 66199626 (+)
LOC110530386 NA coding downstream 74985 66139734 ~ 66141456 (+)
G736477 NA non-coding upstream 130492 65910066 ~ 65911742 (+)
G736466 NA non-coding upstream 145194 65896803 ~ 65897040 (+)
G736463 NA non-coding upstream 146611 65895189 ~ 65895623 (+)
G735705 NA non-coding upstream 266755 65747776 ~ 65775479 (+)
G736562 NA non-coding downstream 8576 66073325 ~ 66073533 (+)
G736572 NA non-coding downstream 32936 66097685 ~ 66097913 (+)
G736575 NA non-coding downstream 34718 66099467 ~ 66099675 (+)
G736578 NA non-coding downstream 42539 66107288 ~ 66107524 (+)
G736606 NA non-coding downstream 96489 66161238 ~ 66161448 (+)
LOC110530364 LOC106569228 other upstream 374139 65659289 ~ 65670369 (+)
LOC110530360 tmm70 other upstream 440337 65599331 ~ 65602141 (+)
G735512 NA other upstream 639135 65402223 ~ 65403099 (+)
si:ch211-207d6.2 kiaa1217 other upstream 693737 65300995 ~ 65386540 (+)
G735064 NA other upstream 1211331 64830624 ~ 64830903 (+)
G737194 LOC106569203 other downstream 589913 66654662 ~ 66655753 (+)
kncn kncn other downstream 634937 66699211 ~ 66704200 (+)
G737234 gs02 other downstream 733824 66798573 ~ 66802080 (+)
G737783 NA other downstream 1105718 67170467 ~ 67215629 (+)

Expression


Co-expression Network