si:ch211-106n13.3 (LOC106569214)


Basic Information

Item Value
gene id si:ch211-106n13.3
gene name LOC106569214
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 66100360 ~ 66125932 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613379.2
TTACAGCCTGTCATCTTGTACAGCAGGGAGTAAGTAGCCTGTTTCAGTAAATCTAGACGCGCTGTGTTACTGCAGGACTGTTTGCATTTACATTGATGACTGGTATATTGGCAGCTGATGAGTAAAGAGTGAAGGAGAACTTTGCAGTACTGTTGATCAACAATGAAGAAATGGATATTAGGATCCGTATTAACATGGATGTTCCTTCCACATCTGAGGGGAGATAATTTAGTGGAAGATGTTGACGTTCAAGCGGgctgtagcaCAGCATCAAACGACCTGGTTTACATAATCGACGGTTCCTCCAGCGTGGGCACTccagactttgacttggccaaacGATGGCTGGTCAATATCACCAGAGGCTTTGACGTGAGCTCCCGTCACACCCAGGTGGGCGTGGTCCAGTACAGCGACACGCCCCGTCTGGAGATTCCGCTGGGCAAACACCTGAGCAGCCAGGAACTGGTCAGCGCCATCAACACCATTGGGTACCTGGGGGGCAACACCCAGACGGGCAGGGCCATCAAATTTGCCACGCAGCACGTCTTCCCGTCCTCCAACCGCACACAGCCTGCCAGGAACCGCATTGCTGTGGTGCTGACAGATGGCCGTAGCCAGGACGACGTGGTGGACGCGGCCGTGGAAGCCAAGGCCCAGAATATTATCCTGTTCGCTGTGGGCGTGGGCAACGAGATCACCAACTCCGAGCTGGTGTCCATGGCCAACAATCCCCCCTCTACATATGTTCTCTACGCTGAGGACTACAGCTCTATCGCTAACATCCGAGACGCCATGGAGCAGAAGCTGTGTGAGGagtCTGTGTGCCCAATGCAGATCCCTGGAACAGCCAATGTAAAGGGATTTGAGCTGCTGTCCAGAATGCAGATCGACATGAAAGCAAAGAAAGTCCAGGGCTCGCTGATGTCAGAGACTTCCTACTTGCTTAGCCCCCGACTGGACCTCACCGACAGCACCAGGGCCATCTTCCCTGAGGGTCTGCCTCCCTCCTATGTGTTTGTGGCCACTCTACGCCTGAAGAGCCCCACCAACCATTTGAAGTTGGACCTGATCAGAGTGCTCTCTCAGGATGGGCTGAAACAGTTCGCTGTGACCCTCAATGGACTGGACAAGTCAGTCATCTTCACCAGCACAACCACCAGTGTCAACAAGAAAGAACAGTGTGTCATTTTCAATGACAGAGGAATTAAGAGACTCTTTGACTCAGAGTGGCACCAGTTGAAGCTGCTTGTTAAACCCAGACGTATCATCTGTTACCTGGACGACATGCAGATAGAGGAGCAGCTACTAGAACCTGTATTTCCCATCTACATCAAAGGAAAGATACAGGTCGCCAAGAAGGTCAAGATGGAAGCAACTGTTCCTATTGAGATACAAAAACTGAGGCTTTACTGCGATCCAGAGCAAAGTGAGAAAGAGACAGCGTGTGAAATATACTCTGTGGAGGATGACAGGTGTCCTCTGGAAAGACAACCTGCAGCAGTGGAGAGCTGTAACTGCCCTCAGGGGAAACCTGGGCCTCCTGGTCTTCCTGGGCCTATGGGCTTCCGAggtgagaaagggagggaggggccaCCTGGTCCTGACGGTAAGCCTGGGAAGCCAGGTGAACGTGGAATGGCAGGAGAACTCGGGAAGAATGGGAACAATGGCAAAGCGGGCATACCAGGGCATAAGGGCGAAGCAGGACTCAATGGGGCCAAAGGTGACAAGGGAGCACCAGGCCTTGAAGGCAGACCTGGCCCTCCAGGACCTACAGGACCAGAGAGACAACTTAAATTGGAGGCCACAGGAATTCCAGGAGAAAAGGGAAGTCCAGGTGAAGCAGGAGCTCAGGGACCACCAGGGGAGCATGGACCACATGGGGACACAGGGCCAGTAGGAAAGGATGGTTTTGTTGGACCAGCTGGAGTGAAGGGTGAGAAAGGAGACGTTGGGGTTCATGGTGGTGATGGACAGATTGGAGTTCTGGGAATCCGAGGCCTTCCTGGGCAGATGGGGCCTGCTGGACCTCGGggggagagaggcccACCCGGACAAGAGGGGCTGGTTGGACCAAAAGGACAAGAGGGTCTTCAGGGTCCGGTTGGTCCACCTGGAACTTACGGACTTGAAGGTTCAAAGGGGGCCCAAGGTGCACGTGGATCAGAAGGACATCCTGGGACACCTGGACTGAATGGACTGGAGGGAGAGCAGGGGGTTCAAGGGTTACCTGGTGACCGAGGACTGCCAGGGTTCAAAGGTCACAAGGGGGAAACTGGTGAACCTGGTCCCAAAGGAAGCCAGGGTGAGAGAGGTAACAATGGAGTTCCTGGGAACACTGGGGCAAACGGAGAAACTGGACTCAAAGGAAGCAAAGGAGAGAAAGGCCAATCAGGAGATACTGGAGCCAGAGGGgcggaggggaggaagggggaagtGGGTCTGATGGGAGCTGCTGGAGCTCGCGGCTCTCCTGGACAAGATGGGTTACCAGGGCAACCAGGAGAGCTGGGATACCCAGGCAAACCTGGGAAGCCACCAACTGATGACCACTTGATGAAGCTTTGCGCTAATGTTCTTCGGAATCAGCTGCCGCAGCTCCTGGCAATGATGGCACCAAAAAGTCAATGTGGGCAGTGTGAGACAGTGAAGGGGCCACCTGGTGAGCCAGGCCCGGCCGGCCCCAAGGGCCCCAGTGGAACGCCAGGGTACCCTGGCACGCTCGGTTTACCGGGTTACCCAGGACAGCCAGGCCGGATGGGGCCTCATGGGCACAAAGGTGATATTGGACCAATGGGGTTAAAGGGGTCCAAAGGAGATGGAGACACAGGGTTGACAGGTCCTCCCGGCCCAGCAGGTCTCCAGGGGCCCAGAGGCAGTGACGGACACGGTGTCTCAGGGCCTCCAGGTGAACCAGGGAAGTCAGGAATCCCCGGCATCCCAGGGAAGCGTGGCCCTCCTGGGGCCAATGGCGTATGTGACCCCACCTCCTGCTACCAGGCTATTTTCAGAGAGGAACGCTACAGCAAAGGACCCAACTTCTAGGCCTCACAAGGAAAGCAGGACATTTTAATTTGACATTTTGAGACTAACTAAGTCAAAGACTGCTCACTGAAAAATCAAGGGCTGCTGGAGTGAGTGAGTTAACCCTTTGTTTCATGTGGGATGATCCACTCAAACTTGAGATAAAGAAACAGAGGATATAGGGCAACAAAGTGACGCAAATTGGTATCCAGCCAAACAGGGTTGTTTGACACTGTCTTCAGGCCAGGGGTAATTCAGTGAACAGGCAGAAGTGATGAGGACAAGTGGGGATTAGGGATATTATTACCCCATCACTGGCTCATAATATCCGAGTGACAATGTTGTTTTTACTGTCTATCAGTGTCGAGGAGGTATAGAAACTTACAATGAGAATTGCACTGCCTTAGTTAAACTACCTCTTTGTTGGATCCAAAGCATTAAACATGATCTGGAGTGACAGGTAGCAATTGTGAAAAAGTTTTCTCCCAAATGATTTACTGTATGTTCAAGAGCAACACTAGGAACATACGACTCTGCATCAGAAGTCTTTCACTTTAAAACTACTAGCTCTTCACTACAAAGTACTATATTTTTTATATGTAGAAATTACTTTTATAAGTAATTTATTTTCCTTTTCAATCAAGCTTGTCAGTCATTAATTTGCTTCACTTCTACGGGTATAAACATATTTATTGTCCTAGTCATCATAGATATGCTTATTGTTACACAACTTCTGCATTTTCCTCTCAGTGTTCAGTGAACCTCCTGCTGGATGGAAACAAGCATGTTTACTGCCAGTATGCGTCGTCTGTCTGTAGTAACCATGAACAGTTTTTCCTGATTTAACTTCCATCCTTCTTATTATTATTCTTTcccaaaatatgttttaataTATCAAATGGGCTATTTTGATACAGTTTGTAGTATACTTTTCAAATATTGTTGGCCTGTTACAATTGACTTTCTTATTTTGATTTCCACATTTTCAAAACAAATGAATACATTTCTCCTTGTATTTTCTTATCAGAGAAAACACTGTTGACTGTGAAGTCTTTTTTGAATAAACTTCTGTTGTAGTCTTG
>TU836376
CGGGTTACCCAGGACAGCCAGGCCGGATGGGGCCTCATGGGCACAAAGGTGATATTGGACCAATGGGGTTAAAGGGGTCCAAAGGAGATGGAGACACAGGGTTGACAGGTCCTCCCGGCCCAGCAGGTCTCCAGGGGCCCAGAGGCAGTGACGGACACGGTGTCTCAGGGCCTCCAGGTGAACCAGGGAAGTCAGGAATCCCCGGCATCCCAGGGAAGCGTGGCCCTCCTGGGGCCAATGGCGTATGTGACCCCACCTCCTGCTACCAGGCTATTTTCAGAGAGGAACGCTACAGCAAAGGACCCAACTTCTAGGCCTCACAAGGAAAGCAGGACATTTTAATTTGACATTTTGAGACTAACTAAGTCAAAGACTGCTCACTGAAAAATCAAGGGCTGCTGGAGTGAGTGAGTTAACCCTTTGTTTCATGTGGGATGATCCACTCAAACTTGAGATAAAGAAACAGAGGATATAGGGCAACAAAGTGACGCAAATTGGTATCCAGCCAAACAGGGTTGTTTGACACTGTCTTCAGGCCAGGGGTAATTCAGTGAACAGGCAGAAGTGATGAGGACAAGTGGGGATTAGGGATATTATTACCCCATCACTGGCTCATAATATCCGAGTGACAATGTTGTTTTTACTGTCTATCAGTGTCGAGGAGGTATAGAAACTTACAATGAGAATTGCACTGCCTTAGTTAAACTACCTCTTTGTTGGATCCAAAGCATTAAACATGATCTGGAGTGACAGGTAGCAATTGTGAAAAAGTTTTCTCCCA

Function

NR:

description
collagen alpha-1(XXI) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613379.2 False 4109 mRNA 0.50 30 66100360 66125932
TU836376 True 781 TUCP 0.49 3 66124208 66125338

Neighbor

gene id symbol gene type direction distance location
exoc3 LOC106569216 coding upstream 27561 66066012 ~ 66072799 (+)
LOC110530377 LOC106569285 coding upstream 35611 66042234 ~ 66064749 (+)
mcm6l LOC106569286 coding upstream 59641 66035055 ~ 66040719 (+)
LOC110530372 LOC106569218 coding upstream 73152 66010751 ~ 66027208 (+)
LOC110530370 LOC106569219 coding upstream 94886 65931035 ~ 66005474 (+)
LOC110530382 ccr3 coding downstream 81 66126013 ~ 66128501 (+)
LOC110530963 LOC106569213 coding downstream 5170 66131102 ~ 66199626 (+)
LOC110530386 NA coding downstream 13802 66139734 ~ 66141456 (+)
blvra blvra coding downstream 84071 66210003 ~ 66218844 (+)
LOC110530387 LOC106569210 coding downstream 98050 66223982 ~ 66260619 (+)
G736575 NA non-coding upstream 685 66099467 ~ 66099675 (+)
G736572 NA non-coding upstream 2447 66097685 ~ 66097913 (+)
G736562 NA non-coding upstream 26827 66073325 ~ 66073533 (+)
LOC110530371 NA non-coding upstream 180222 65918298 ~ 65920176 (+)
G736606 NA non-coding downstream 35306 66161238 ~ 66161448 (+)
G736608 NA non-coding downstream 40355 66166287 ~ 66166568 (+)
G736625 NA non-coding downstream 93433 66219365 ~ 66219569 (+)
G736627 NA non-coding downstream 95303 66221235 ~ 66221687 (+)
G736659 NA non-coding downstream 143546 66269478 ~ 66274708 (+)
LOC110530364 LOC106569228 other upstream 432265 65659289 ~ 65670369 (+)
LOC110530360 tmm70 other upstream 498463 65599331 ~ 65602141 (+)
G735512 NA other upstream 697261 65402223 ~ 65403099 (+)
si:ch211-207d6.2 kiaa1217 other upstream 751863 65300995 ~ 65386540 (+)
G735064 NA other upstream 1269457 64830624 ~ 64830903 (+)
G737194 LOC106569203 other downstream 528730 66654662 ~ 66655753 (+)
kncn kncn other downstream 573754 66699211 ~ 66704200 (+)
G737234 gs02 other downstream 672641 66798573 ~ 66802080 (+)
G737783 NA other downstream 1044535 67170467 ~ 67215629 (+)
G738020 NA other downstream 1105250 67231182 ~ 67231913 (+)
G736578 NA non-coding upstream 16684 66107288 ~ 66107524 (+)

Expression


Co-expression Network