LOC110530382 (ccr3)


Basic Information

Item Value
gene id LOC110530382
gene name ccr3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 66126013 ~ 66128501 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613380.2
GTTTGGGAGGCTCTTAGGCTGGAGTAGATCACATATCTCTAGCAGTACCAACACCTCTCGCACACAAAGCTTCAACCTACTATACTAGCATTGACACTTTAACAGGAAAACAACACTTCCTTTCTGACAATCACAACACCAGGACCAAGAAAAGTCACACTGgttaagaGACTGACAACCATGGCGGAGTACAAAGACTTCTTGGATTTGTTCAGCGATGAAAATGACATGGATTATAACTACACCGACCCCATCTATGTTGTGGATAAACTGGTGAATCTTTGTGCCACAGCTGATGTGAACAGATTTGGAGCCAAGTTCACACCAATATTGTACACCATCAATTTCCTGCTAAGCATCATTGGGAATGGGCTGGTTCTGTGCATTATTTACAAATACGAGAAGCTCACTTCCATCACCAACATCTTCCTCCTCAACCTGGTCATCTCTGACCTGCTGTTCGCCTCCAGTTTGCCCTTCTGGGCCTTGTACCACCTCTATGGGTGGATCTTTGACTCGGTCATGTGCAAACTAGTGGGTAGCTTGTACTTCTTAGGattctacagctccatcctcttcctcactctcATGACCTTTGACCGGTACCTGGCTGTGGTCCATGCCATCAACGCCCCCAAATGGAGGAGGAAGATCTACGCCTGTGTCTCCTCGGCAGTCGTGTGGTGTATCAGCCTGCTGGCCAGTGTCAAGGAGTTGGTTCTATACAATGTCCGGGAGGATCCTCGTGACGGATACCTTTGTGAGGAGACGGGCTTCTCCAATGCGATCATGAGAAAATGGCAGCTGGTTGGTTACTATCAGCAGTTTGTGATCTTCTTCCTGTTTCCCTTGGCTATGGTCATGTACTGCTATGTTAGAATCACGGTCCGAATCATGTCAACCCAGATGAGAGGGAAGTGCAGGGCAGTCAAGCTGATTTTCGTGATTATATTCACGTTTTTTGTGTGCTGGACCCCATACAATGTTGTAATTCTGTTGAGGGCCCTCCAGATCTCCACCAGTGATGATTCTGAGCCGTGTTCTGAAGTGCTTAACCACGCTATGTATGTCACTAGGAATATAGCATACCTCTACTGTTGTGTGAGCCCTGTCTTTTACACGTTTGTTGGGAAAAAGTTTCAGAGTCACTTCTGGCAACTACTTGCAAAGCGCATCCCATGTCTGAAGAGACATATCATGACTAGCCAAAGTGGCAACAGTAGAATAACTTCTCAGAAAAGTCCACATACCATGTATGAATATGAGAAAGGAACTGGTCTTCAAGCCAGAGCATAGGTTCCGGTACCCATTTAGGGTACCCATTTACTGTTTAAATTTAGGTGCAGGatctccacaatacttttgagctaatattattttttttttaccccctttttcaattacgatcttgtctcattgctgcaactgcCCAACGGGCTCGGTAGAGTCATAcctcctccgaaacatgacccgccaaaccgcgctccTTAACCCGGCTGTACCAATATGTTCGGAGGAAACACAGCTCACCTGAAGATCccagccaaactctcccctaacccagatggcTAATTGTGCGTCGCGCTATGTGACTCCCTGTCACGACACAGCCTGGGGTCAAACCCAGGTctatagtgacacctcaagcactgcgatgcaatgccttaTATGGCTGCATCACTCAGGAGGCCCCTTGAGTTAATATTCTACAAGAGGAACAGGAgatcaagcagtagaacattttgtGCTGGTACTTACAGTAGCTCTAGTGATCTCCTGCCAGGTCAAAaacatgccatttagcagacacttgtaTCCAAATTGACTTATGCATTCCACATATGGGTGGTCCTAGGAGttgaacccacaatcctggcattGGAAGTGTCAGGCTCTACCAGGTTGAGCTACAGAGGACAAACTGTTGATATGATTTGTAAATGATGTACAAGATGTCTGATAAGGTACATGTTTTCCATGATGTTTAGCTCTGTTTGCATGCTTTGAGGAGGGTTTTATGTTAATGTTCTCAGGGAATTTCAGCGCAACACAATGTGTACATGCAATTACAATTATGTGTACTTTTGCTTCTGACTTGATGTACTCAACATTTGTTGCTAAATTGTAAGTTACAatacaaattatattttaaataATTTGATTCTATAAAAGAAAGTGTACATTTGATTTGCTTCAGGAACTTGAGATGTTACTATCTTTGAATCTTTGCATTACAtttctaataaaataaaaaatata

Function

symbol description
ccr3 Enables C-C chemokine binding activity. Involved in positive regulation of angiogenesis. Located in plasma membrane. Implicated in asthma; ovary epithelial cancer; and rhinitis. Biomarker of several diseases, including asthma (multiple); autoimmune disease (multiple); cystic fibrosis; hepatitis B; and lung disease (multiple).

NR:

description
C-C chemokine receptor type 8-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0006935 chemotaxis biological_process
GO:0070098 chemokine-mediated signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004950 chemokine receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613380.2 True 2259 mRNA 0.44 2 66126013 66128501

Neighbor

gene id symbol gene type direction distance location
si:ch211-106n13.3 LOC106569214 coding upstream 81 66100360 ~ 66125932 (+)
exoc3 LOC106569216 coding upstream 53214 66066012 ~ 66072799 (+)
LOC110530377 LOC106569285 coding upstream 61264 66042234 ~ 66064749 (+)
mcm6l LOC106569286 coding upstream 85294 66035055 ~ 66040719 (+)
LOC110530372 LOC106569218 coding upstream 98805 66010751 ~ 66027208 (+)
LOC110530963 LOC106569213 coding downstream 2601 66131102 ~ 66199626 (+)
LOC110530386 NA coding downstream 11233 66139734 ~ 66141456 (+)
blvra blvra coding downstream 81502 66210003 ~ 66218844 (+)
LOC110530387 LOC106569210 coding downstream 95481 66223982 ~ 66260619 (+)
LOC110530392 LOC106569206 coding downstream 308880 66437381 ~ 66509379 (+)
G736578 NA non-coding upstream 18489 66107288 ~ 66107524 (+)
G736575 NA non-coding upstream 26338 66099467 ~ 66099675 (+)
G736572 NA non-coding upstream 28100 66097685 ~ 66097913 (+)
G736562 NA non-coding upstream 52480 66073325 ~ 66073533 (+)
G736606 NA non-coding downstream 32737 66161238 ~ 66161448 (+)
G736608 NA non-coding downstream 37786 66166287 ~ 66166568 (+)
G736625 NA non-coding downstream 90864 66219365 ~ 66219569 (+)
G736627 NA non-coding downstream 92734 66221235 ~ 66221687 (+)
G736659 NA non-coding downstream 140977 66269478 ~ 66274708 (+)
LOC110530364 LOC106569228 other upstream 457918 65659289 ~ 65670369 (+)
LOC110530360 tmm70 other upstream 524116 65599331 ~ 65602141 (+)
G735512 NA other upstream 722914 65402223 ~ 65403099 (+)
si:ch211-207d6.2 kiaa1217 other upstream 777516 65300995 ~ 65386540 (+)
G737194 LOC106569203 other downstream 526161 66654662 ~ 66655753 (+)
kncn kncn other downstream 571185 66699211 ~ 66704200 (+)
G737234 gs02 other downstream 670072 66798573 ~ 66802080 (+)
G737783 NA other downstream 1041966 67170467 ~ 67215629 (+)
G738020 NA other downstream 1102681 67231182 ~ 67231913 (+)

Expression


Co-expression Network