kncn (kncn)


Basic Information

Item Value
gene id kncn
gene name kncn
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 66699211 ~ 66704200 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613413.2
TTATAGAGAGGGGAACTACAGACGCTCTGTGACCACTCTCAGTTTAGTCCTAATTACCATCACTGACTGCGCTATCAGTGGTCTTAGTATTCTtgtgggggagagggaaggaggagcagCTGTGATCAGATTTATAGAGTAGTTTGTATATCCCTGTCTGGAGGGTGAATGAATGAACGGTGGCAAAGAGAAACCAGAGCCATGTCTTTAATGATGCATGAGGAGTCTTGAAGCAGGCCAGAGCAGAGACAATGCCTGGCTGGCAGAGAAAGGAGTCCTGtgacagtgagagtgagagtggcGGTGGGTACTTGCAACTAGAGTTGGTGCTGACACAAGTGCTACAGTTTGGGCTGACTCTGAAGGCCCAAGTTAGATCCAGTCTGTTCCAGTCCTAGTCCCTCTGCATGTCTAGGGCCTTAAGCGGGCAGAGTCTGGTGACCAGGTGGGGGGTCTCCTCTCCACCTGTCGAATGAGCGCTGTCAGCATTGGGGGGTACCACGGTCTGCGGGTGGGCTCGGCCCTGCTCAGCATCGTGGcggggtgcatcattatcggggTGTCGAGGGAGTGTGATGCGGATGCCGTAGGGGGAATCTTCCTCGGTGCGGGAGGGCTGGGCCTCCTCATCGCTGTCTTCCCCTTCATAAGAGCCTGGCTCAATATTAACAACATTCTCCCCACCTTGGGAAACTTCAGAGTGCACCCTATGCCTGCTAACCCTCCTGGCCCTGAGCAACCAGAGACACTGAAACGAGAAGCGACTCAGAGCCAGCTGAATCTGGAGCGCTCTAAAAGCCGGATGGGGACATTTGTTGATGCCGGACCGATGGCTGAGGCCTCCGCAGATGAGGGGACATCCTCAGACATGCCAGACATCTTGTCCAGACGAAAGTTCAAGCAGACCCTCCCTGATCCAGACCTCCCGTAAATTGGTTTTATAGCAGCCACACAGCACACATCTCTCATACACGCCTACTCAGATTTGAGTTCACCCTCAAATGGACTTCACAAGTTGGTGAATCAGATGTTTACTTACTTCAACAATACAATTCAAAAGCTACATACTGTGCCTTCTCCTAACTATCGAGAGGAATACATATTTTCTTCCACAATGTCTCATTTTATTAGCAATTTTATTCTTAtcctagagagggagaggg
>TU837146
AGCGCTGTCAGCATTGGGGGGTACCACGGTCTGCGGGTGGGCTCGGCCCTGCTCAGCATCGTGGcggggtgcatcattatcggggTGTCGAGGGAGTGTGATGCGGATGCCGTAGGGGGAATCTTCCTCGGTGCGGGAGGGCTGGGCCTCCTCATCGCTGTCTTCCCCTTCATAAGAGCCTGGCTCAATATTAACAACATTCTCCCCACCTTGGGAAACTTCAGAGTGCACCCTATGCCTGCTAACCCTCCTGGCCCTGAGCAACCAGAGACACTGAAACGAGAAGCGACTCAGAGCCAGCTGAATCTGGAGCGCTCTAAAAGCCGGATGGGGACATTTGTTGATGCCGGACCGATGGCTGAGGCCTCCGCAGATGAGGGGACATCCTCAGACATGCCAGACATCTTGTCCAGACGAAAGTTCAAGCAGACCCTCCCTGATCCAGACCTCCCGTAAATTGGTTTTATAGCAGCCACACAGCACACATCTCTCATACACGCCTACTCAGATTTGAGTTCACCCTCAAATGGACTTCACAAGTTGGTGAATCAGATGTTTACTTACTTCAACAAT

Function

symbol description
kncn Orthologous to human KNCN (kinocilin).

NR:

description
kinocilin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613413.2 False 1163 mRNA 0.51 5 66699211 66704200
TU837146 True 573 TUCP 0.55 5 66699686 66704085

Neighbor

gene id symbol gene type direction distance location
LOC110530967 NA coding upstream 26604 66671103 ~ 66672607 (+)
LOC118965632 NA coding upstream 49659 66648634 ~ 66649552 (+)
LOC110530393 LOC106569204 coding upstream 102971 66510425 ~ 66596240 (+)
LOC110530392 LOC106569206 coding upstream 189832 66437381 ~ 66509379 (+)
LOC110530387 LOC106569210 coding upstream 438592 66223982 ~ 66260619 (+)
LOC110530397 LOC106569284 coding downstream 7887 66712087 ~ 66721454 (+)
LOC110529133 NA coding downstream 125731 66829931 ~ 66830478 (+)
LOC110530398 LOC106569198 coding downstream 163315 66867515 ~ 66935353 (+)
LOC110530399 LOC106569196 coding downstream 244422 66948622 ~ 66973138 (+)
arhgap21b LOC106569193 coding downstream 271481 66975681 ~ 67054754 (+)
G737202 NA non-coding upstream 37535 66661463 ~ 66661676 (+)
G737200 NA non-coding upstream 38985 66659995 ~ 66660226 (+)
G737189 NA non-coding upstream 52648 66646339 ~ 66646563 (+)
G737162 NA non-coding upstream 81593 66617366 ~ 66617618 (+)
G737216 NA non-coding downstream 60 66704260 ~ 66706474 (+)
G737224 NA non-coding downstream 8891 66713091 ~ 66713315 (+)
G737222 NA non-coding downstream 21434 66725634 ~ 66726888 (+)
G737235 NA non-coding downstream 83741 66787941 ~ 66794377 (+)
G737300 NA non-coding downstream 124148 66828348 ~ 66828626 (+)
G737194 LOC106569203 other upstream 43458 66654662 ~ 66655753 (+)
si:ch211-106n13.3 LOC106569214 other upstream 573873 66100360 ~ 66125932 (+)
LOC110530364 LOC106569228 other upstream 1031116 65659289 ~ 65670369 (+)
LOC110530360 tmm70 other upstream 1097314 65599331 ~ 65602141 (+)
G735512 NA other upstream 1296112 65402223 ~ 65403099 (+)
G737234 gs02 other downstream 94373 66798573 ~ 66802080 (+)
G737783 NA other downstream 466267 67170467 ~ 67215629 (+)
G738020 NA other downstream 526982 67231182 ~ 67231913 (+)
G738244 NA other downstream 841929 67546129 ~ 67547609 (+)
LOC110530413 NA other downstream 1202177 67904516 ~ 67924427 (+)

Expression


Co-expression Network