LOC110530397 (LOC106569284)


Basic Information

Item Value
gene id LOC110530397
gene name LOC106569284
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 66712087 ~ 66721454 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613414.2
TTACGATAATTTGACAGGTTTTATGTAGGCTACATTGTGAACAATGCTGCTATTGAAATGGACATAATCTTGTGTACTAAGAGTTGTATGTATCCTATAATTGTATAGGCGTCATGTATCCGACTGCACAGTCACGTGAACACCATATGTCAAGACCAAAACCTTCACCTGAATAAGCCTCTCCCACAGATGCACTGCACTACGTTCACTGGCCATTGTTGTGACATTTCATATCGATTGAATGGCTCACTATGATATGATCAATCTGAAAATCAATCCTTCGGCGTATACAAGTAGTTCCAACCTGACCATCCATGTGCGAATGTTATTCGGATTGAAAATGCGTGTTGGCGATGTAATTCTTCAGGAATCTTCAGGTATTCTGAATATCAGCACAGAAGGTGCTTTTACACTGTGAACAATCAGTCAGCACAGCCATGGCCTTCGTCGGTGGTCTGTTGCCAAGGGGAATAGTCCTGGctgaaggatagagagagaaggggagagagagggagagaaaaggcagCCTTGCGGTGCAGAAGAAGAGATGGTCATCACTGACAGGAGCTCCAGCACTCCTGGGCCCAAGAAGAAGGAACCGAAGAAGAGGGCATCCCGCCCCCATGGCCTGCCCTCCCCGGCGCTGTGCTGCGCGTGTGGCTTGTGCATCATGCTGGCAGGCATCAACATCACCCTGGTGGGGGCGTTTGCCTTCAGCACCATGGTGCCCTCTACCAACCCTCCCATCATCATAGGGCCCATCCTGCTTCTGGTGGCCTTCTCTTTCTTCGGGGCGTGCTGTGTCTGCAGCCGCCTGCCCCCTGCCCAGGGCTCCCGGAGGTCTAATGTGGGCGGAAGGAGCATGGGGATGATGGGGCGTGGAGGTTTAGCCGGGGGAGTGACGTTTGAGATTGAGACGAGTGAGCACACATTGCAGGACACGACAGCAGTACAGCTCAGCCCCTCAGCCTCACCTGGGTCATCCCGGGCATCCAGCCCCGAGCGGGATGCTTCTCCTGACCCCGCACCCCCAGGGACCTTCAAGCTCTTCACCATGGAGACCAATGGCCCCACCTCCGCCACGGCATGCTATACCGCCTCCTCggcagggggaggggctgtgAGGCTCAACCTGCCACGTGATGATGTGGCCACCTAGCACTCCCCTGATTAACACATTGTAGCATGAGCCTCCTGCTCCAGGGGACTGACGCAAAACTATGTAAATGTGGGCTGTGACGGTCATGAAATTTTGGATGACGGTAATTGGCCAGCCAAGTGAGTACGGTCTCAGTAATAACCATTCGAAAagcaaaaaaattaaataaataattatacatttcatgttgctaaaaggtcagtcaagttcttccacaccgatcttgacaaaccatttctgtatggacctcactttgtgcatg
>XR_002474521.2
TTACGATAATTTGACAGGTTTTATGTAGGCTACATTGTGAACAATGCTGCTATTGAAATGGACATAATCTTGTGTACTAAGAGTTGTATGTATCCTATAATTGTATAGGCGTCATGTATCCGACTGCACAGTCACGTGAACACCATATGTCAAGACCAAAACCTTCACCTGAATAAGCCTCTCCCACAGATGCACTGCACTACGTTCACTGGCCATTGTTGTGACATTTCATATCGATTGAATGGCTCACTATGATATGATCAATCTGAAAATCAATCCTTCGGCGTATACAAGTAGTTCCAACCTGACCATCCATGTGCGAATGTTATTCGGATTGAAAATGCGTGTTGGCGATGTAATTCTTCAGGAATCTTCAGGTATTCTGAATATCAGCACAGAAGGTGCTTTTACACTGTGAACAATCAGTCAGCACAGCCATGGCCTTCGTCGGTGGTCTGTTGCCAAGGGGAATAGTCCTGGctgaaggatagagagagaaggggagagagagggagagaaaaggcagCCTTGCGGTGCAGAAGAAGAGATGGTCATCACTGACAGGAGCTCCAGCACTCCTGGGCCCAAGAAGAAGGAACCGAAGAAGAGGGCATCCCGCCCCCATGGCCTGCCCTCCCCGGCGCTGTGCTGCGCGTGTGGCTTGTGCATCATGCTGGCAGGCATCAACATCACCCTGGTGGGGGCGTTTGCCTTCAGCACCATGGTGCCCTCTACCAACCCTCCCATCATCATAGGGCCCATCCTGCTTCTGGTGGCCTTCTCTTTCTTCGGGGCGTGCTGTGTCTGCAGCCGCCTGCCCCCTGCCCAGGGCTCCCGGAGGTCTAATGTGGGCGGAAGGAGCATGGGGATGATGGGGCGTGGAGGTTTAGCCGGGGGAGTGACGTTTGAGATTGAGACGAGTGAGCACACATTGCAGGACACGACAGCAGTACAGCTCAGCCCCTCAGCCTCACCTGGGTCATCCCGGGCATCCAGCCCCGAGCGGGATGCTTCTCCTGACCCCGCACCCCCAGGGACCTTCAAGCTCTTCACCATGGAGACCAATGGCCCCACCTCCGCCACGGCATGCTATACCGCCTCCTCggcagggggaggggctgtgAGGCTCAACCTGCCACGTGATGATGTGGCCACCTAGCACTCCCCTGATTAACACATTGTAGCATGAGCCTCCTGCTCCAGGGGACTGACGCAAAACTATGTAAATGTGGGCTGTGACGGTCATGAAATTTTGGATGACGGTAATTGGCCAGCCAAgacaatgacccaacacacctctaggctgtgtaagggctatttgatcaagaaggagag

Function

NR:

description
uncharacterized protein LOC110530397

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613414.2 False 1421 mRNA 0.52 2 66712087 66714672
XR_002474521.2 True 1335 mRNA 0.53 3 66712087 66721454

Neighbor

gene id symbol gene type direction distance location
kncn kncn coding upstream 7887 66699211 ~ 66704200 (+)
LOC110530967 NA coding upstream 39480 66671103 ~ 66672607 (+)
LOC118965632 NA coding upstream 62535 66648634 ~ 66649552 (+)
LOC110530393 LOC106569204 coding upstream 115847 66510425 ~ 66596240 (+)
LOC110530392 LOC106569206 coding upstream 202708 66437381 ~ 66509379 (+)
LOC110529133 NA coding downstream 108477 66829931 ~ 66830478 (+)
LOC110530398 LOC106569198 coding downstream 146061 66867515 ~ 66935353 (+)
LOC110530399 LOC106569196 coding downstream 227168 66948622 ~ 66973138 (+)
arhgap21b LOC106569193 coding downstream 254227 66975681 ~ 67054754 (+)
LOC110530401 LOC106599252 coding downstream 569223 67290677 ~ 67430071 (+)
G737216 NA non-coding upstream 5613 66704260 ~ 66706474 (+)
G737202 NA non-coding upstream 50411 66661463 ~ 66661676 (+)
G737200 NA non-coding upstream 51861 66659995 ~ 66660226 (+)
G737189 NA non-coding upstream 65524 66646339 ~ 66646563 (+)
G737222 NA non-coding downstream 4180 66725634 ~ 66726888 (+)
G737235 NA non-coding downstream 66487 66787941 ~ 66794377 (+)
G737300 NA non-coding downstream 106894 66828348 ~ 66828626 (+)
G737663 NA non-coding downstream 220148 66941602 ~ 66941897 (+)
G737720 NA non-coding downstream 348593 67070047 ~ 67070309 (+)
G737194 LOC106569203 other upstream 56334 66654662 ~ 66655753 (+)
si:ch211-106n13.3 LOC106569214 other upstream 586749 66100360 ~ 66125932 (+)
LOC110530364 LOC106569228 other upstream 1043992 65659289 ~ 65670369 (+)
LOC110530360 tmm70 other upstream 1110190 65599331 ~ 65602141 (+)
G737234 gs02 other downstream 77119 66798573 ~ 66802080 (+)
G737783 NA other downstream 449013 67170467 ~ 67215629 (+)
G738020 NA other downstream 509728 67231182 ~ 67231913 (+)
G738244 NA other downstream 824675 67546129 ~ 67547609 (+)
LOC110530413 NA other downstream 1184923 67904516 ~ 67924427 (+)

Expression


Co-expression Network