LOC110530398 (LOC106569198)


Basic Information

Item Value
gene id LOC110530398
gene name LOC106569198
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 66867515 ~ 66935353 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986016.1
GTTTAGGGGGCGGAGGCTTTTATTCCATACTCTGGTTATGTGTCAGTTGCTAGACATAAGCGAAACAGTAACAGTTTACAGTTGGTGTTACTTTCAACATCTAACCCTCAGAGAGAGTGACTACATGTTTCGTCCATCAAGCTTTCAAGGAAATTGGGAATTGCATATTACAGGCTTTGCGCACGTCACTTTTGACACGACACGAACCTTTAAGTTGAATCTGCTTTTTTCTACAGTAGGCTAGCTGTGCAGGAGTGGTCAGAGCCAAAACCAGCTATTCAGATCGGATTTCACCCAAACCAGCTGGGAGAGAGCATTTGTCATTTTGATTCCCTCCCCGATCCAGGAAAGCTTAGTCtaccagggagagagaaaatagagagagcgggtgagaaaggaggagagacgggGGGGTTCCAAAGGAATTTCCAAGGATATTTATTCTGTTGCCGTAAGAAAAGTGTTGGTCAGTTGGGGGCGAGGCAGAGACCGCGGTCAAGGATGGACGAGCAGCCTCGGTTGATGCACTCCCACGGCGTAGGCATGGCCGGACACCCCGGCCTGGCACAGCATATGCAGGATGGCACGGGAGGGACGGACGGAGATGGAAGAAAGCAGGACATTGGAGACATATTACAGCAAATAATGACCATCACAGACCAAAGCCTGGACGAAGCGCAGGCCAGGAAACATGCCCTGAATTGTCACAGGATGAAACCGGCTCTCTTCAACATCTTGTGCGATATAAAAGAGAAAACAGTGCTCAGTATCCGTGGTTCCCAGGAGGAGGAGCCTCCAGATGCCCAACTCATGCGATTGGACAACATGCTTCTGGCGGAAGGTGTGTCCGGACCGGAGAAAGGGGGCGGGTCTGCGGTGGCtgcggcagcagcagcagctgcagcgGGAGGAGGAGTGGGCTCAGACACCAACTCGGCAGAACACTCAGACTACCGGGCCAAGCTGACTCAGATCCGCGGGATCTACCACACAGAACTGGAGAAGTATGAACAGGCATGTAATGAGTTTACCACCCATGTGATGAACCTGCTGAGGGAGCAGAGCCGCACACGGCCCATCTCGCCCAAAGAGATAGAACGCATGGTGGGGATCATCCACCGCAAGTTCAGCTCCATTCAGATGCAGCTCAAACAGAGCACCTGCGAGGCCGTCATGATCCTACGCTCACGCTTCCTCGATGCCagacgaAAGAGGAGGAACTTCAACAAGCAGGCAACAGAGATCCTAAATGAGTATTTCTACTCCCACTTGTCCAACCCGTATCCCAGTGAAGAGGCCAAGGAAGAGCTGGCCAAGAAGTGCTCCATCACAATGTCACAGGTATCGAACTGGTTTGGAAACAAGAGAATCCGATACAAGAAAAACATTGGCAAGTTCCAAGAGGAAGCAAACATGTACGCCGCGAAGACCGCCGTCAGTGCAACCAGTGTATCAGCCCATGGCAGCCAGGCCaactccccctccacccccaactCTGCAGGTTCTGCTGGCTCTTTTAACATGTCAAACTCCGGAGACTTGTTTATGAGTGTGCAGGCTCTGAATGGGGACTCATACCAGGGGGCCGGGGTTGGGGCCAATGTTCAGTCCCAGGTAGGACCCTCGCAGAGACTAGTGGATACTCTTCGCCATGTTATCAGCCAGACAGGAGGATACAGTGACAGCATCGCCGCCAGTCAGATGTACAGTCCACAGGGCATCAACACAAACGGTGGCTGGCAGGATGCTCCGACCCCCTCGTCAGTGAACTCGCTCACAGAAGGACCCGGAAGTGTTCACTCGGATACCTCCAACTGATTATTTTATCCTCCACACCTTCCATTCCCACAACCCATCGATGAACTGGCAGAGCCAATCACAGTATTAAACATAGAGGCATACTACCCAATGTCCTGTAGATTTCAGGGGTGCATAACTAAAACAACCTTTCCTAAGCTACAGTACAATGGGACATTTGAGATACATACAGTAATAGGAATGTcagaacaaaaatctaaacaatGCAAAAAGGATGAATACAAATGTTTGTTCAGATTTCACAGGATATTTAGAGGGCTCCGGTTGCTTACTCACCTGTGATGGTTTCACTCATATTGATGATATTCAGTGATAAGATCAATTCAGACAACCCAATCTGTGTACTTCAATTTAAATGCTGCATTCTACCTCTCGGCAACTAAAAAGTAAAACAAATCATATGAAAGAACATTCATTTGTTTTCTGACTAAAACATGAACTTTGTCATTGTATGAAAGAAGCACTTCGTCATGCTTTTGTTTTGTGGTCCCTCACCCATTCTATGGTACGACATTTAGGCTTTTACTGTTGCTCCCTTGTTTACAGTGTGTGCTTTAGAAACGGTGTTCGCTTTCCCCTCTCCCACAGAGAAATAACCAAGACGACTTAGAACTTGATTTACTACATCTTTTTCTATTCGTTTCTCCATAGAAGACTTGTTGGGAAAGCAGGTCAGCCTAGTGAACTCTGAGGACCCTTCACCCTGACTAGCAGGTCTTCAATCTGGGTGGAAGGTgttagaaaagtaaaacacgctGGTATGAGAATGCACATTGGCTGATCTAAGGGCTTTAATGGAAATTGAGTAGACAATTTAATATACATTGTAGATGTGTGTCTTCCTGGTTTATAAACTTATGCCCCACGACCCCTTTGATATCTTATCAGAATGTGGGAGCGCTGTGGGCCCACAAGCACTCACAGGGCTCTGTTCCAATATCCATACTAGTGTACCACTTAGAATGCATGCCCAATACATGCTTTATTCGAAGTATGCTAGTGTCGATATTGGAACAGGGGAACAGAGTGTGTGCTATTGATTGTCTGAGGGCCTGTGAACAAGAGGAGCGCCCTCCTTTTTAACAACCACCTCATTGAGTATCCATATGTCTCATCAGAGGTAATCGTGTGAAGTTACAGTTATGTCgtgtaaaaaataaatcataaatacAATAAACACCTGTCATCAAAAACCCATACGAGCTTGATTCACATTAGTCACCTAATGTTACTGTTAACCAAAACCTTTATACTTATTGATCTATTGTTGACATTTTATGTGTACTTTCAAGAGGTCCTAACCCATCTAGCTATATTCACTCATGTACTTACATGTTGGATTTTTTTACTGTACCTTTTGCTAATTTTCCCAATTCTGGTGGGGGATGATAACCAACTGAACAATGCTGCCTAATTGAAAAACAATGTTGTTGATACAGTCCAATTCAGAAGAAACCATTTCTGTTGAAAAATCTTTCAAGGATCTGTGTAGTAACTGAGTTTGTTTTTACGTACATTGCATCAGAATCCAGTTAAACAGGGAAGTCGTTACGTTAATAGGATTTAAAACATAAATCTGCGGATGCAGGTAACACCAGGACTGAACTTACAGTAGCCATGATGCACAGGTCATGCATGAGATGCTTTGTACTCCATGATTATGTTGAACAGACACAATGTTTTCAAGTCAGTGTTCAATACTGTTCAATGCTGTTCAATACTGTTCAATGCTGTTCAATACTGTTCAATGCTGTTCAATACTGTTCAATGCCCTCTCATACAATGGAACTGTACTGTTCTTTAAACCCAGAGTTGatttctgtttctctttccagGCATTTTTGGGGCAGTTTAATATGTATTACAGTATATGACAGCATTCTTTCTTCCGCTGTATTAAGAACCAAAAACCTACATTATAATGTCACCTGTATCCTTGCTTTTCACTTCTTCAACTGACTTTTATGAATCCTCAGAATTCATAAGCATATTGAATGTTGATGTGCTGAAAGGTCTAATGTCCATAGCAAAACTAGAGGTGGGAAAATTCTTTCAGACAAACAAAGATGATATTTGGAcatttgatatactgtataatacttgTCCTTTTGTTGTGTGGACTATATAGTTATTCTTTAGTATTTGGTTATTTACTTTTTATGGTATGCTATTGTATGTCATGGTTCCCATATTCTTGTCAATTAGCTCTCTCATGATGTGATTATGTGAACATTGCCACATTGTACTTGACTTGCTTTGTTGAACAATAATTTATGCAGTTTCAACATTAAACTTATTATACTATGTAATACACCAAGACAAA
>XM_036986017.1
TTAGGGGGCGGAGGCTTTTATTCCATACTCTGGTTATGTGTCAGTTGCTAGACATAAGCGAAACAGTAACAGTTTACAGTTGGTGTTACTTTCAACATCTAACCCTCAGAGAGAGTGACTACATGTTTCGTCCATCAAGCTTTCAAGGAAATTGGGAATTGCATATTACAGGCTTTGCGCACGTCACTTTTGACACGACACGAACCTTTAAGTTGAATCTGCTTTTTTCTACAGTAGGCTAGCTGTGCAGGAGTGGTCAGAGCCAAAACCAGCTATTCAGATCGGATTTCACCCAAACCAGCTGGGAGAGAGCATTTGTCATTTTGATTCCCTCCCCGATCCAGGAAAGCTTAGTCtaccagggagagagaaaatagagagagcgggtgagaaaggaggagagacgggGGGGTTCCAAAGGAATTTCCAAGGATATTTATTCTGTTGCCGTAAGAAAAGTGTTGGTCAGTTGGGGGCGAGGCAGAGACCGCGGTCAAGGATGGACGAGCAGCCTCGGTTGATGCACTCCCACGGCGTAGGCATGGCCGGACACCCCGGCCTGGCACAGCATATGCAGGATGGCACGGGAGGGACGGACGGAGATGGAAGAAAGCAGGACATTGGAGACATATTACAGCAAATAATGACCATCACAGACCAAAGCCTGGACGAAGCGCAGGCCAGGAAACATGCCCTGAATTGTCACAGGATGAAACCGGCTCTCTTCAACATCTTGTGCGATATAAAAGAGAAAACAGTGCTCAGTATCCGTGGTTCCCAGGAGGAGGAGCCTCCAGATGCCCAACTCATGCGATTGGACAACATGCTTCTGGCGGAAGGTGTGTCCGGACCGGAGAAAGGGGGCGGGTCTGCGGTGGCtgcggcagcagcagcagctgcagcgGGAGGAGGAGTGGGCTCAGACACCAACTCGGCAGAACACTCAGACTACCGGGCCAAGCTGACTCAGATCCGCGGGATCTACCACACAGAACTGGAGAAGTATGAACAGGCATGTAATGAGTTTACCACCCATGTGATGAACCTGCTGAGGGAGCAGAGCCGCACACGGCCCATCTCGCCCAAAGAGATAGAACGCATGGTGGGGATCATCCACCGCAAGTTCAGCTCCATTCAGATGCAGCTCAAACAGAGCACCTGCGAGGCCGTCATGATCCTACGCTCACGCTTCCTCGATGCCagacgaAAGAGGAGGAACTTCAACAAGCAGGCAACAGAGATCCTAAATGAGTATTTCTACTCCCACTTGTCCAACCCGTATCCCAGTGAAGAGGCCAAGGAAGAGCTGGCCAAGAAGTGCTCCATCACAATGTCACAGGTATCGAACTGGTTTGGAAACAAGAGAATCCGATACAAGAAAAACATTGGCAAGTTCCAAGAGGAAGCAAACATGTACGCCGCGAAGACCGCCGTCAGTGCAACCAGTGTATCAGCCCATGGCAGCCAGGCCaactccccctccacccccaactCTGCAGGTTCTGCTGGCTCTTTTAACATGTCAAACTCCGGAGACTTGTTTATGAGTGTGCAGGCTCTGAATGGGGACTCATACCAGGGGGCCGGGGTTGGGGCCAATGTTCAGTCCCAGGTGGATACTCTTCGCCATGTTATCAGCCAGACAGGAGGATACAGTGACAGCATCGCCGCCAGTCAGATGTACAGTCCACAGGGCATCAACACAAACGGTGGCTGGCAGGATGCTCCGACCCCCTCGTCAGTGAACTCGCTCACAGAAGGACCCGGAAGTGTTCACTCGGATACCTCCAACTGATTATTTTATCCTCCACACCTTCCATTCCCACAACCCATCGATGAACTGGCAGAGCCAATCACAGTATTAAACATAGAGGCATACTACCCAATGTCCTGTAGATTTCAGGGGTGCATAACTAAAACAACCTTTCCTAAGCTACAGTACAATGGGACATTTGAGATACATACAGTAATAGGAATGTcagaacaaaaatctaaacaatGCAAAAAGGATGAATACAAATGTTTGTTCAGATTTCACAGGATATTTAGAGGGCTCCGGTTGCTTACTCACCTGTGATGGTTTCACTCATATTGATGATATTCAGTGATAAGATCAATTCAGACAACCCAATCTGTGTACTTCAATTTAAATGCTGCATTCTACCTCTCGGCAACTAAAAAGTAAAACAAATCATATGAAAGAACATTCATTTGTTTTCTGACTAAAACATGAACTTTGTCATTGTATGAAAGAAGCACTTCGTCATGCTTTTGTTTTGTGGTCCCTCACCCATTCTATGGTACGACATTTAGGCTTTTACTGTTGCTCCCTTGTTTACAGTGTGTGCTTTAGAAACGGTGTTCGCTTTCCCCTCTCCCACAGAGAAATAACCAAGACGACTTAGAACTTGATTTACTACATCTTTTTCTATTCGTTTCTCCATAGAAGACTTGTTGGGAAAGCAGGTCAGCCTAGTGAACTCTGAGGACCCTTCACCCTGACTAGCAGGTCTTCAATCTGGGTGGAAGGTgttagaaaagtaaaacacgctGGTATGAGAATGCACATTGGCTGATCTAAGGGCTTTAATGGAAATTGAGTAGACAATTTAATATACATTGTAGATGTGTGTCTTCCTGGTTTATAAACTTATGCCCCACGACCCCTTTGATATCTTATCAGAATGTGGGAGCGCTGTGGGCCCACAAGCACTCACAGGGCTCTGTTCCAATATCCATACTAGTGTACCACTTAGAATGCATGCCCAATACATGCTTTATTCGAAGTATGCTAGTGTCGATATTGGAACAGGGGAACAGAGTGTGTGCTATTGATTGTCTGAGGGCCTGTGAACAAGAGGAGCGCCCTCCTTTTTAACAACCACCTCATTGAGTATCCATATGTCTCATCAGAGGTAATCGTGTGAAGTTACAGTTATGTCgtgtaaaaaataaatcataaatacAATAAACACCTGTCATCAAAAACCCATACGAGCTTGATTCACATTAGTCACCTAATGTTACTGTTAACCAAAACCTTTATACTTATTGATCTATTGTTGACATTTTATGTGTACTTTCAAGAGGTCCTAACCCATCTAGCTATATTCACTCATGTACTTACATGTTGGATTTTTTTACTGTACCTTTTGCTAATTTTCCCAATTCTGGTGGGGGATGATAACCAACTGAACAATGCTGCCTAATTGAAAAACAATGTTGTTGATACAGTCCAATTCAGAAGAAACCATTTCTGTTGAAAAATCTTTCAAGGATCTGTGTAGTAACTGAGTTTGTTTTTACGTACATTGCATCAGAATCCAGTTAAACAGGGAAGTCGTTACGTTAATAGGATTTAAAACATAAATCTGCGGATGCAGGTAACACCAGGACTGAACTTACAGTAGCCATGATGCACAGGTCATGCATGAGATGCTTTGTACTCCATGATTATGTTGAACAGACACAATGTTTTCAAGTCAGTGTTCAATACTGTTCAATGCTGTTCAATACTGTTCAATGCTGTTCAATACTGTTCAATGCTGTTCAATACTGTTCAATGCCCTCTCATACAATGGAACTGTACTGTTCTTTAAACCCAGAGTTGatttctgtttctctttccagGCATTTTTGGGGCAGTTTAATATGTATTACAGTATATGACAGCATTCTTTCTTCCGCTGTATTAAGAACCAAAAACCTACATTATAATGTCACCTGTATCCTTGCTTTTCACTTCTTCAACTGACTTTTATGAATCCTCAGAATTCATAAGCATATTGAATGTTGATGTGCTGAAAGGTCTAATGTCCATAGCAAAACTAGAGGTGGGAAAATTCTTTCAGACAAACAAAGATGATATTTGGAcatttgatatactgtataatacttgTCCTTTTGTTGTGTGGACTATATAGTTATTCTTTAGTATTTGGTTATTTACTTTTTATGGTATGCTATTGTATGTCATGGTTCCCATATTCTTGTCAATTAGCTCTCTCATGATGTGATTATGTGAACATTGCCACATTGTACTTGACTTGCTTTGTTGAACAATAATTTATGCAGTTTCAACATTAAACTTATTATACTATGTAATACACCAAGACAAA
>XM_036986018.1
GGGGCGGAGGCTTTTATTCCATACTCTGGTTATGTGTCAGTTGCTAGACATAAGCGAAACAGTAACAGTTTACAGTTGGTGTTACTTTCAACATCTAACCCTCAGAGAGAGTGACTACATGTTTCGTCCATCAAGCTTTCAAGGAAATTGGGAATTGCATATTACAGGCTTTGCGCACGTCACTTTTGACACGACACGAACCTTTAAGTTGAATCTGCTTTTTTCTACAGTAGGCTAGCTGTGCAGGAGTGGTCAGAGCCAAAACCAGCTATTCAGATCGGATTTCACCCAAACCAGCTGGGAGAGAGCATTTGTCATTTTGATTCCCTCCCCGATCCAGGAAAGCTTAGTCtaccagggagagagaaaatagagagagcgggtgagaaaggaggagagacgggGGGGTTCCAAAGGAATTTCCAAGGATATTTATTCTGTTGCCGTAAGAAAAGTGTTGGTCAGTTGGGGGCGAGGCAGAGACCGCGGTCAAGGATGGACGAGCAGCCTCGGTTGATGCACTCCCACGGCGTAGGCATGGCCGGACACCCCGGCCTGGCACAGCATATGCAGGATGGCACGGGAGGGACGGACGGAGATGGAAGAAAGCAGGACATTGGAGACATATTACAGCAAATAATGACCATCACAGACCAAAGCCTGGACGAAGCGCAGGCCAGGAAACATGCCCTGAATTGTCACAGGATGAAACCGGCTCTCTTCAACATCTTGTGCGATATAAAAGAGAAAACAGTGCTCAGTATCCGTGGTTCCCAGGAGGAGGAGCCTCCAGATGCCCAACTCATGCGATTGGACAACATGCTTCTGGCGGAAGGTGTGTCCGGACCGGAGAAAGGGGGCGGGTCTGCGGTGGCtgcggcagcagcagcagctgcagcgGGAGGAGGAGTGGGCTCAGACACCAACTCGGCAGAACACTCAGACTACCGGGCCAAGCTGACTCAGATCCGCGGGATCTACCACACAGAACTGGAGAAGTATGAACAGGCATGTAATGAGTTTACCACCCATGTGATGAACCTGCTGAGGGAGCAGAGCCGCACACGGCCCATCTCGCCCAAAGAGATAGAACGCATGGTGGGGATCATCCACCGCAAGTTCAGCTCCATTCAGATGCAGCTCAAACAGAGCACCTGCGAGGCCGTCATGATCCTACGCTCACGCTTCCTCGATGCCagacgaAAGAGGAGGAACTTCAACAAGCAGGCAACAGAGATCCTAAATGAGTATTTCTACTCCCACTTGTCCAACCCGTATCCCAGTGAAGAGGCCAAGGAAGAGCTGGCCAAGAAGTGCTCCATCACAATGTCACAGGTATCGAACTGGTTTGGAAACAAGAGAATCCGATACAAGAAAAACATTGGCAAGTTCCAAGAGGAAGCAAACATGTACGCCGCGAAGACCGCCGTCAGTGCAACCAGTGTATCAGCCCATGGCAGCCAGGCCaactccccctccacccccaactCTGCAGGTGGATACTCTTCGCCATGTTATCAGCCAGACAGGAGGATACAGTGACAGCATCGCCGCCAGTCAGATGTACAGTCCACAGGGCATCAACACAAACGGTGGCTGGCAGGATGCTCCGACCCCCTCGTCAGTGAACTCGCTCACAGAAGGACCCGGAAGTGTTCACTCGGATACCTCCAACTGATTATTTTATCCTCCACACCTTCCATTCCCACAACCCATCGATGAAC

Function

NR:

description
PREDICTED: pre-B-cell leukemia transcription factor 1-like isoform X3

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048795 swim bladder morphogenesis biological_process
GO:0030223 neutrophil differentiation biological_process
GO:0060216 definitive hemopoiesis biological_process
GO:0001944 vasculature development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09355 PBX1; pre-B-cell leukemia transcription factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986016.1 False 4141 mRNA 0.44 9 66867515 66935353
XM_036986017.1 False 4118 mRNA 0.44 9 66867517 66935353
XM_036986018.1 True 1724 mRNA 0.52 8 66867521 66933076

Neighbor

gene id symbol gene type direction distance location
LOC110529133 NA coding upstream 37037 66829931 ~ 66830478 (+)
LOC110530397 LOC106569284 coding upstream 146061 66712087 ~ 66721454 (+)
kncn kncn coding upstream 163315 66699211 ~ 66704200 (+)
LOC110530967 NA coding upstream 194908 66671103 ~ 66672607 (+)
LOC118965632 NA coding upstream 217963 66648634 ~ 66649552 (+)
LOC110530399 LOC106569196 coding downstream 13269 66948622 ~ 66973138 (+)
arhgap21b LOC106569193 coding downstream 40328 66975681 ~ 67054754 (+)
LOC110530401 LOC106599252 coding downstream 355324 67290677 ~ 67430071 (+)
LOC110530403 LOC106569190 coding downstream 495500 67430853 ~ 67474302 (+)
LOC110530407 LOC106569186 coding downstream 642492 67577845 ~ 67693642 (+)
G737300 NA non-coding upstream 38889 66828348 ~ 66828626 (+)
G737235 NA non-coding upstream 73138 66787941 ~ 66794377 (+)
G737222 NA non-coding upstream 140627 66725634 ~ 66726888 (+)
G737224 NA non-coding upstream 154200 66713091 ~ 66713315 (+)
G737216 NA non-coding upstream 161041 66704260 ~ 66706474 (+)
G737663 NA non-coding downstream 6249 66941602 ~ 66941897 (+)
G737720 NA non-coding downstream 134694 67070047 ~ 67070309 (+)
G738026 NA non-coding downstream 298541 67233894 ~ 67234129 (+)
G738037 NA non-coding downstream 303876 67239229 ~ 67239429 (+)
G738045 NA non-coding downstream 307095 67242448 ~ 67242852 (+)
G737234 gs02 other upstream 65435 66798573 ~ 66802080 (+)
G737194 LOC106569203 other upstream 211762 66654662 ~ 66655753 (+)
si:ch211-106n13.3 LOC106569214 other upstream 742177 66100360 ~ 66125932 (+)
LOC110530364 LOC106569228 other upstream 1199420 65659289 ~ 65670369 (+)
G737783 NA other downstream 235114 67170467 ~ 67215629 (+)
G738020 NA other downstream 295829 67231182 ~ 67231913 (+)
G738244 NA other downstream 610776 67546129 ~ 67547609 (+)
LOC110530413 NA other downstream 971024 67904516 ~ 67924427 (+)
G739648 NA other downstream 1923030 68858383 ~ 68858753 (+)

Expression


Co-expression Network