LOC110530399 (LOC106569196)


Basic Information

Item Value
gene id LOC110530399
gene name LOC106569196
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 66948622 ~ 66973138 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613418.2
TTAAGGCGAGAAGAGAACATTCTTTCACAGTGGCGCTCCTCCTCCCTCGTGATTCGACACTCCGCCACGATCTTCGACTGACTTGTGAGTACTGCGGCTCTGAAAACGAGTTCGGGTTCAAGAAAACAACATGGCAGACGATTTGACCATTCAAACTGGCGGAAAAGACGGAGGAATTGTGATCAACGATGACTGGCCAGGTTACAGTTTAGAGCTTTTTAACTATCCAAAACACTATTCTGGAGATCTAGAGTGTGTTTACATCCCACATGGTGTCATCATGGACAGGACAGAACGGCTTGCCCGTAACATAATGGGTGACCTGGGCGACCATGACATTGTGGTGCTATGTGTTCTGAAAGCCGGGTACCAGTTCTGTGCTGACTTGGTGGAGAGGATCAAAGCACTGAGTCGTAACTCAGACCACACTCTACCCATGAGTGTCAACTTCATCCGCCTCAAGAGTTATGTGAATGATCAGTCCACAGAGGATCTCCACATCGTTGGAGCAGAAGACCTCTCTTTCCTGACTGGAAAGGCAATTGTAGACACAGGCAAGACAATGAAGACTCTCCTAAAACACGTGGAGGCCTTCAGGCCCAAGATGATCAAAGTAGCAGGTTTGCTGGTGAAGAGAGTGCCAAACAGTTCAGGATGTCTCCCAGATTATGTTGGTTTTGAGATACCCAATCGTTTTGTAGTTGGATATGCCTTGGACTACAATGAGTATTTCAGAGACCTCAATCATATCTGTGTGATCAGTGAAAGCGGGAAGCTGAAATACAAGGTCTAAGAAGTGATGTTTATAGGATTCTGCAGAGGAAATGTTTCCACAAGAAGCTTGGACACTTACCATGAGAGGCCATGCAGTAACAACGGTTATCAAACCCAAAGACCCTCACTCTCGCTCTTTGCTGGTTGACACACCTCAGGGCCTACCCATAGACCATTGGACTCGTTGCATAATAATTAGAACCTCCATAGTTATTTTTATAACAAAGCTGTGAACCTGTGATGTACTGTTACAATGTTCATGAAACCTGTCTGTGTTGATGAAaaatatataatgaacagacattGCTATGTAGAATTTGTAGCCATCAATGTTTCAGTTTAGTGACATTTGTTTATCTCAACTTACTGCTACTGTATTTTGTGGGACACATTTGGCCCATGTAAAGGTGGGCACCGTCCGGTAGattgaataaaaaaaatacaataataat
>XM_021613417.2
AGAGAACATTCTTTCACAGTGGCGCTCCTCCTCCCTCGTGATTCGACACTCCGCCACGATCTTCGACTGACTTGTGAGTACTGCGGCTCTGAAAACGAGTTCGGGTTCAAGAAAACAACATGGCAGACGATTTGACCATTCAAACTGGCGGAAAAGACGGAGGAATTGTGATCAACGATGACTGGCCAGGTTACAGTTTAGAGCTTTTTAACTATCCAAAACACTATTCTGGAGATCTAGAGTGTGTTTACATCCCACATGGTGTCATCATGGACAGGACAGAACGGCTTGCCCGTAACATAATGGGTGACCTGGGCGACCATGACATTGTGGTGCTATGTGTTCTGAAAGCCGGGTACCAGTTCTGTGCTGACTTGGTGGAGAGGATCAAAGCACTGAGTCGTAACTCAGACCACACTCTACCCATGAGTGTCAACTTCATCCGCCTCAAGAGTTATGTGAATGATCAGTCCACAGAGGATCTCCACATCGTTGGAGCAGAAGACCTCTCTTTCCTGACTGGAAAGAACGTCCTAATCGTAGAGGCAATTGTAGACACAGGCAAGACAATGAAGACTCTCCTAAAACACGTGGAGGCCTTCAGGCCCAAGATGATCAAAGTAGCAGGTTTGCTGGTGAAGAGAGTGCCAAACAGTTCAGGATGTCTCCCAGATTATGTTGGTTTTGAGATACCCAATCGTTTTGTAGTTGGATATGCCTTGGACTACAATGAGTATTTCAGAGACCTCAATCATATCTGTGTGATCAGTGAAAGCGGGAAGCTGAAATACAAGGTCTAAGAAGTGATGTTTATAGGATTCTGCAGAGGAAATGTTTCCACAAGAAGCTTGGACACTTACCATGAGAGGCCATGCAGTAACAACGGTTATCAAACCCAAAGACCCTCACTCTCGCTCTTTGCTGGTTGACACACCTCAGGGCCTACCCATAGACCATTGGACTCGTTGCATAATAATTAGAACCTCCATAGTTATTTTTATAACAAAGCTGTGAACCTGTGATGTACTGTTACAATGTTCATGAAACCTGTCTGTGTTGATGAAaaatatataatgaacagacattGCTATGTAGAATTTGTAGCCATCAATGTTTCAGTTTAGTGACATTTGTTTATCTCAACTTACTGCTACTGTATTTTGTGGGACACATTTGGCCCATGTAAAGGTGGGCACCGTCCGGTAGattgaataaaaaaaatacaataataat

Function

NR:

description
hypoxanthine-guanine phosphoribosyltransferase-like

GO: NA

KEGG:

id description
K24196 PRTFDC1; phosphoribosyltransferase domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613418.2 False 1226 mRNA 0.44 8 66948622 66973138
XM_021613417.2 True 1233 mRNA 0.44 9 66948633 66973138

Neighbor

gene id symbol gene type direction distance location
LOC110530398 LOC106569198 coding upstream 13269 66867515 ~ 66935353 (+)
LOC110529133 NA coding upstream 118144 66829931 ~ 66830478 (+)
LOC110530397 LOC106569284 coding upstream 227168 66712087 ~ 66721454 (+)
kncn kncn coding upstream 244422 66699211 ~ 66704200 (+)
LOC110530967 NA coding upstream 276015 66671103 ~ 66672607 (+)
arhgap21b LOC106569193 coding downstream 2543 66975681 ~ 67054754 (+)
LOC110530401 LOC106599252 coding downstream 317539 67290677 ~ 67430071 (+)
LOC110530403 LOC106569190 coding downstream 457715 67430853 ~ 67474302 (+)
LOC110530407 LOC106569186 coding downstream 604707 67577845 ~ 67693642 (+)
LOC110530410 LOC106569184 coding downstream 720679 67693817 ~ 67726942 (+)
G737663 NA non-coding upstream 6725 66941602 ~ 66941897 (+)
G737300 NA non-coding upstream 119996 66828348 ~ 66828626 (+)
G737235 NA non-coding upstream 154245 66787941 ~ 66794377 (+)
G737222 NA non-coding upstream 221734 66725634 ~ 66726888 (+)
G737224 NA non-coding upstream 235307 66713091 ~ 66713315 (+)
G737720 NA non-coding downstream 96909 67070047 ~ 67070309 (+)
G738026 NA non-coding downstream 260756 67233894 ~ 67234129 (+)
G738037 NA non-coding downstream 266091 67239229 ~ 67239429 (+)
G738045 NA non-coding downstream 269310 67242448 ~ 67242852 (+)
G738075 NA non-coding downstream 289983 67263121 ~ 67263369 (+)
G737234 gs02 other upstream 146542 66798573 ~ 66802080 (+)
G737194 LOC106569203 other upstream 292869 66654662 ~ 66655753 (+)
si:ch211-106n13.3 LOC106569214 other upstream 823284 66100360 ~ 66125932 (+)
LOC110530364 LOC106569228 other upstream 1280527 65659289 ~ 65670369 (+)
G737783 NA other downstream 197329 67170467 ~ 67215629 (+)
G738020 NA other downstream 258044 67231182 ~ 67231913 (+)
G738244 NA other downstream 572991 67546129 ~ 67547609 (+)
LOC110530413 NA other downstream 933239 67904516 ~ 67924427 (+)
G739648 NA other downstream 1885245 68858383 ~ 68858753 (+)

Expression


Co-expression Network