XLOC_025865


Basic Information

Item Value
gene id XLOC_025865
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 60037550 ~ 60043897 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052835
AGCTTTTGCCACAGAAGTATCTGAAAATCCCCCTGTTTACTCGTTCACTGTAAACAATATATTGATTTACAAGTGAGACAGAAAGTGAGGGCTTTATCATGAATATTGATGCCGTTCTCACTCTTGACAAAGACCGGCCTCTAGTGGGCCATCAGTGTGACTGTGTGAATGAAGAGACCCAGAACATGAGCTTCTGTGTTTGTctttatttacagtttaattttagtccacaatataaataattacagTCAAAGGCTCACAGTGATCTGAACATTTACATTACTCTGTGCTAAGTTTCTTCAGATTTGAGCCCCCGCCTTGTTTCTTCCTCaagagaaattattattattgtttactactaatagtaataaaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052835 True 373 lncRNA 0.37 2 60037550 60043897

Neighbor

gene id symbol gene type direction distance location
XLOC_025863 si:ch211-110e21.3 coding upstream 20836 60007703 ~ 60016714 (+)
XLOC_025862 arhgdia coding upstream 90342 59899452 ~ 59947208 (+)
XLOC_025861 alyref coding upstream 145709 59880317 ~ 59891841 (+)
XLOC_025860 mcrip1 coding upstream 160689 59864872 ~ 59876861 (+)
XLOC_025859 CU693479.1 coding upstream 174753 59851537 ~ 59862797 (+)
XLOC_025866 zgc:113030 coding downstream 883 60044780 ~ 60074605 (+)
XLOC_025867 si:ch211-110e21.4 coding downstream 3135 60047032 ~ 60055409 (+)
XLOC_025868 NA coding downstream 22491 60066388 ~ 60067768 (+)
XLOC_025869 xylt2 coding downstream 133877 60177774 ~ 60226027 (+)
XLOC_025870 NA coding downstream 312317 60356214 ~ 60357972 (+)
XLOC_025429 BX649540.1 misc upstream 29788514 30248739 ~ 30249036 (+)
XLOC_025856 NA non-coding upstream 813354 59212160 ~ 59224196 (+)
XLOC_025853 NA non-coding upstream 1009713 59024934 ~ 59027837 (+)
XLOC_025851 CABZ01044154.1 non-coding upstream 1070453 58961904 ~ 58967097 (+)
XLOC_025850 NA non-coding upstream 1180067 58835461 ~ 58857483 (+)
XLOC_025848 NA non-coding upstream 1225717 58806215 ~ 58811833 (+)
XLOC_025871 NA non-coding downstream 339225 60383122 ~ 60401867 (+)
XLOC_025872 NA non-coding downstream 344352 60388249 ~ 60388895 (+)
XLOC_025873 NA non-coding downstream 394217 60438114 ~ 60439578 (+)

Expression


Co-expression Network