LOC110530410 (LOC106569184)


Basic Information

Item Value
gene id LOC110530410
gene name LOC106569184
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 67693817 ~ 67726942 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613433.2
TCCCTGTCGACAAGAAAAATATGATCGCGCAGCGTTTCTATTTCGGCACGTACCCCGACCCAGAGAAAGACGGACATACAAAAGGGTGAAGAAAACGATGTAACTCAACGGTATTGTTGTACCGCAAACACTTTTTGCTAGAATTAAAGTATTATTTATAAGAACATGAAATAGCCGTTGTTAGTTCGAAGTAGGCTACTGCTAGCAGGCTACTGTACAGCAGTTGCAACGAGACGAGGTGCAGTGCACACCTCCCCCACAAGTCTAGCCGCTGTCACTTCCATTTCACCGGTGTGTTTTGGTTCGATAGGCGGTGCGCGCTGACAATTTGTCAATCAGTTGTCGACACTAAATAGACTGGTTGTGATCGATGGCGAAACCAGAACCAGCCCAGCAACATGTGGAGGAGAAAGCGGAGGAGATTGACGACGCAGAGTTGGCATTTAAAGGAATAAACATGCTGCTCAACAACGGATTCAAGGAGAGCGACGATCTGTTCAGAAAATACAGGACCCACAGTCCACTGATGAGTTTCGGAGCCAGTTTTGTCAGCTTTCTGaATGCCATGATGACGTTTGAGGAGGAGAAGATGCAGATGGCCTTTGATGACCTCCGAGCCactgagagactgtgtgagagcgACAACACTGGGGTCATAGAGACCATCAAAAAAAAGATCAGGAGGAGTGACTCCCAGAGGTCAGGGGTGGCAATAGTAGACCGTCTCCAGAGACAGATCATTGTGGCAGACTGCCAGGTGTACCTCGCCGTCCTCTCTTTCATCAAACAGGAACTCTCATCATACATCAGAGGAGGCTGGATCCTCCGCAAAGCCTGGAAGATGTACAACAAGTGTTATAGCGACATCAGCCAGCTGCAGGATTGCAGCAAGAGGAGGTCCTCCGACCAGCAAGggtctccctctccatccactgAACAGGCCAACCGCAACCACGCCACGCCCCCAACCCAGATGACCAATGGGGTGAGCCCGGAGGCCCTGGAGAGGCTCAAGGGCTCGGTCAGTTTTGGCTACGGCTTGTTCCACCTGTGCATCTCCATGGTACCGCCACACCTGCTGAAGATCGTCAACCTTCTGGGTTTCCCTGGCGACCGCCACCAGGGGCTGTCCGCCCTTACGTATGCCAGTGAAAGTAAGGACATGAAGGCCCCCCTAGCTACGTTGGCCCTCTTGTGGTACTATACGGTAGTGCAACCCTTTTTTGCCCTGGACGGCTCAGACACACAGGCCGGCCTGATGGAGGCTAAGGCTATCCTCCAGAGGAAGGAGCCTGTATACCCTAACTCCTCCCTCTTCTTGTTCTTCAAGGGCAGGGTGCAGCGCCTGGAGTGCCAGATCAACAGTGCCTTGATGTCCTTCCAAAATGCCTTGGAGCTGGCTACAGACCAGAGGGAGATCcagcatgtgtgtttgtatgaaaTAGGGTGGTGCAGTATGATCGAGCTGAGGTATAGTGACGCCTACAGGGCCTTTCAGCGTCTGGCAACTGAGTCACGCTGGTCCCAGTGCTACTACGCCTACCTAACTGGAGTGTCCCAGGGAGCATCAGGAGATCTGGAGGGGGCTGCCGCTGTCTTCAAGGATGTGCATACGCTTCTGAAACGGAAGAACAATCAGATAGAACAGTTCTCTATGAAGAGGGCGGAGAGGCTAAGGAAACACTCCCCATCCAGAGAGCTGTGTGTCCTGGCTGTGATCGAGGTACTTTACCTGTGGAAGGCTCTACCGAACTGCTGCACCTCTAAGCTACAGATCATGAGCCAAGTTCTGCAGGAACTAGATGACGTCTCAATTGCTGGCCTGAAAAACCTGCTTCTTGGTGACATACACAGATGTCTCGGCAACATAAAAGACGCCATTGAGTGCTTCCATCTGGCTGCCGGAGATGAGGTGGGTCGTCAGAACAACTCCTATGTGCAGCCCTACTCCTGCTACGAGTTGGGCTGTGTTTTACTGGACAGCCCTGAGTCTGAAGCGAAGGGCAGAGCTCTGATGCTTCAGGCCAAGGATGACTTTGCTGGCTATGACTTTGAGAACAGGCTCCATGTACGCATCCACTCAGCTCTGGCTTCCATGAGGAAGGAGGTGGCCCCACCTTGACTACTGCCCCATTCCTCCACCATACATCCACCCTAGCTCTGCGTTGAGGGTAGAAGGATCTGGAAACAACTACAGAAGCCATCTTGATCTTCACTGTGATGGTTCACtgcaatgtgtttgtttcagttgACTTATGTTTGTATAATGAATGTGCCATCAAGTTTGTAATGCGTAGTTTACAGTAAATCTCCTGGAGGGATAGTGCAGACTACTGGAGTGTAATTGTGTGTTTCAACCAGATCAAATATGTACAGTAGTTGCTGCTGGGAGGCAAATGTAACTTTTTACCAAGGAAAAATATATTGGGGGAAAATCTGTCAGTGAGACAGCAGGTAGTCTaatggttaagagtgttgggccagtaactgaaaggttgctggttcaaatccctgtgccgactaggtgaaacatctgtcgacatgcccttgagcaaggcattaaCCCAATTGCTCCTGTACGTCGCTTTGGAtacgagcgtctgctaaatggctaaaATGTGAATAGTACCATATCTTTCTCCCATAAGATATGAAAGGGTTCTGATTGAAAACTGTGTATGACGCTTCATTATAAAGCAGTGAACTTGTGCCATAGAAACCCTACTGTCTAGGTTTCTGCCAGATGACCTCAAAGTCCTGTTGCTCTTACAGTAGTAAACAATCTGAATGCACAATCCCTGTGCTACTACTCATCACCTGGCCATTGTCACTGTAAATTGACCTTAGGTTATACATTGTGAATCCATTAAAGATATCCTCAAACATGTTACAACGttgttacttaaaaaaaacatgtttttactggTTTTAATAACAAGTCTATTGATATTGAAAGGGAAAACCCCTATTCATATCACTGTAAATATAGATATGGTACTAGCTAAATTACATTGTCCTTTTGGCACTCACTTATGTGTATAACATCTACACTCTGCTGTACTTGTATTTGCTGGAGACTGGTTTTCCTTTGTTGCTGTGTTTTTTATGTATAAGATCATGTGTTAAAACAATACATCTCTTAAATCTA

Function

NR:

description
tetratricopeptide repeat protein 39C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613433.2 True 3148 mRNA 0.48 14 67693817 67726942

Neighbor

gene id symbol gene type direction distance location
LOC110530407 LOC106569186 coding upstream 175 67577845 ~ 67693642 (+)
LOC110530403 LOC106569190 coding upstream 219515 67430853 ~ 67474302 (+)
LOC110530401 LOC106599252 coding upstream 263746 67290677 ~ 67430071 (+)
arhgap21b LOC106569193 coding upstream 639063 66975681 ~ 67054754 (+)
LOC110530399 LOC106569196 coding upstream 720679 66948622 ~ 66973138 (+)
LOC110530969 LOC106569181 coding downstream 32442 67759384 ~ 67769486 (+)
LOC110530413 NA coding downstream 177574 67904516 ~ 67924427 (+)
LOC110530418 LOC106569175 coding downstream 458965 68185907 ~ 68198975 (+)
LOC118965633 NA coding downstream 748461 68475403 ~ 68506363 (+)
LOC110530424 LOC106569169 coding downstream 1146495 68873437 ~ 68898424 (+)
G738262 NA non-coding upstream 116711 67576771 ~ 67577106 (+)
G738260 NA non-coding upstream 117730 67575871 ~ 67576087 (+)
G738149 NA non-coding upstream 296705 67396880 ~ 67397112 (+)
G738126 NA non-coding upstream 351805 67341197 ~ 67342012 (+)
G738344 LOC106569180 non-coding downstream 46506 67773448 ~ 67775640 (+)
G738367 NA non-coding downstream 75380 67802322 ~ 67804768 (+)
G738793 LOC100380853 non-coding downstream 146333 67873275 ~ 67873508 (+)
G738798 NA non-coding downstream 155921 67882863 ~ 67883114 (+)
G738832 NA non-coding downstream 197665 67924607 ~ 67983064 (+)
G738244 NA other upstream 146208 67546129 ~ 67547609 (+)
G738020 NA other upstream 461904 67231182 ~ 67231913 (+)
G737783 NA other upstream 478188 67170467 ~ 67215629 (+)
G737234 gs02 other upstream 891737 66798573 ~ 66802080 (+)
kncn kncn other upstream 989732 66699211 ~ 66704200 (+)
G739648 NA other downstream 1131441 68858383 ~ 68858753 (+)
G739670 NA other downstream 1176423 68903365 ~ 68906965 (+)
G739708 NA other downstream 1277395 69004337 ~ 69005116 (+)
G740827 ripk1 other downstream 1809458 69536400 ~ 69538276 (+)

Expression


Co-expression Network