LOC110530413


Basic Information

Item Value
gene id LOC110530413
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 67904516 ~ 67924427 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052937.1
gacttgATACAATCCTGCCTTTCGATATCCTGTCCaataaatcaattgaatttacaacagttggactccaatcaagttgttgaaacatctcgaGGACGATTAacggaaacaagatgcacctgagctcaatgtcgagtctcatCGCAAAGGGTCTGGACACTTATGGGCATTCTGCATTCCAGTGTACATCCCATACATCCTGACAGGGAGATGGATGTTGGGCAGAGGACTGTGCAAACTGTGGCTGGTCATGGACTACTTGCTCTGTACTGCCTCTGTCTTCAACATTGTCCTGATCAGCTATGACCGCTTCCTCTCTGTCACCAGAGCGGTGAGTAGGAGGAACCTTATGGCCTTGAATTAGTTCGTGGGAATGCCTTGAGAGGGGGATACCATACACACAATTGTCAGTTCTTAATTAAAGCCCCCTTGCAGTCTCTTTCATTTTATTTATGCATCATCACTGTATGTCTACTAAATCACTgtttatttcatgaaaataaatccaaatatgt
>XM_036986052.1
gacttgATACAATCCTGCCTTTCGATATCCTGTCCaataaatcaattgaatttacaacagttggactccaatcaagttgttgaaacatctcgaGGACGATTAacggaaacaagatgcacctgagctcaatgtcgagtctcatCGCAAAGGGTCTGGACACTTATGTAAGGGCATTCTGCATTCCAGTGTACATCCCATACATCCTGACAGGGAGATGGATGTTGGGCAGAGGACTGTGCAAACTGTGGCTGGTCATGGACTACTTGCTCTGTACTGCCTCTGTCTTCAACATTGTCCTGATCAGCTATGACCGCTTCCTCTCTGTCACCAGAGCGGTGAGCTACCGTGCCAGACAGGGCATGACCCACCAAGCCATCATGAAGATGATAGCAGTCTGGGTCCTGGCCTTTGTCCTCTATGGCCCTGCCATCATCTTCTGGGAGCTGGTGGTGGGGAAGAGCCGTGTCCCAGAGGATGAGTGCTACGCTGAGTTCTACTACACCTGGTACTTCCTCCTCAGTGCCTCCATGTTGGAGTTCTTCTCCCCCTTAATCTCCGTAACCTTCTTCAACCTCAGCATCTACCTCAACATACGTCGGAGGAGGCTCCGGAACAGAGATGAGACGAGTGGACAGGCCCACGCGCCTGATGGACAGCCCCCTCCCCTGGGGAGAGGGGAATGCCTCCGCCTCACTTCCCTCTTCTCCCGGAACTCGGTAGTGGTTAAGAAGCTGTCTAGCACTGTGTCGGTCCAGGAGAGGGGATCAGGCTCGGGGTCCTTCCACTCCCAGATCTTCCATCCCCCCTTGGAGCGGCAGGACACCTCCACTAGGGGCACACAGCGCAGCTGCCTGTCAAGGGACAAGAAGATTGCCAAGTCGCTGGCTgtcatcgtgtgtgtgtttgctgtgtgcTGGGCGCCCTACACCCTCCTGATGATCATCAGAGCCGCCTGTAAGGGACGCTGCGTCCAGCACCACTGGTATGAGGTCACCTTCTGGCTGCTGTGGCTCAACTCGGCCATTAACCCTTTCCTCTACCCGCTCTGTCACAGCAGCTTCCGCAGGGCCTTCGGCAGGATCCTGTGTCCCAGACGGAGGGCAACTCAGCTGGCCACCAACTGACCTGCAGCATGGCCAATCACTTAAGGGCCTCTACTGTATCATGTGATGGATAGGCCAGTAGCCAGAGAAGTGGTGACCCAAAGGAGATAATCAAGACTAAAACTGATACTTTAGCAATGAACATTTTTAATGGAACAAAACAGATTGTCTTAGATGTGATAGGCCAGTGGCCAGAGAAGTGGGGTGAATCTCGAAAGCCGAAATGACTCAAAGGTGATACTACATAAACTCAAAGGTGATACTACCCActggcacaaactggttgaatcaacgttgtttcaacgtaatttgtcaacGTCTTGTGACGTGGAATCTAAGTGGAAAATACAAAAAGTCATCAACTgatgttttgagggtgaaatttctaCAACAGGATTATGTCGCCATTGTAACCAAATTTCGACCTAGACAAaccttgtaaaaaatatataccttTAAAACATCTTTAAAAGATCTTCAATGTCATATCCACtaccaaaataagaaaaaaaacaataggctgggcagcacctcctactggagaatgTATTTCTGTACAGATTCCCTTTGGTCTCCTACCCAAGGTTTTAAACAAGCCCAGCCCTGCTTAGctatgatatttgtcactgactctTACCAGTGCGATATCATGAGAATGATTTTTGCGAGTTCTCCACTTAATAATGATATAGATTCGCTGTTGCTCTCAAAGTCATTCCAAAAAGGTAGGTTTTAAGTAGCAAATGAAAAGAGACCATACTTTATCACTCATGTACTGTATCATCAACGatgctatttaggcctatatacagtagaaTCTGTAAAGTCATCAACAGGTATTGTTTCAGTTCAGCAGGCCTAGGCTTTCAAACTCTGGTTGATTTGAAATGTAATGATATgtagtgatattgaattgtgtttggttgtcaacgcaaccagagatcaacatttgaaggagttGTATCTTCTTTATGTTCcgtctgtgccactgacttaatTCATCATTTCTATGTTTGATTCACGTCTCAAACTCAACCAAAAATCGAAGTTAAGGAataggatggagatggagaagtGAATCTAACATTATTTGTAGAATAACTGGAATTGAAGCCAGACTTAAGTCAGTCGTACAGTTGGAacattgtattttgtatttattaaggatccccattagctgcctccatccagggcagcagctactcttcctggggtccagcaacattaaggcaattatatacaattaaaaatattac
>XM_021613439.2
GGCTAGTGGAGGTGTTTCCTTACTTGTGGAAACTTTTAGCGGAAGTTTCAATTCATTGTAGATACCACAGACGACGTATATAGTGATGTAGATGCCAAAGCGTTTCCCACGTAACAAAAGTTCTGATGCTGCCTAGACCTGCGCGCACTTCATGATAGGCAATGAATGAGCGTTGTTGAGCAAGACGATATATATATAATTGACAGCATCTTTAGGTCATTATATGCATATTCGAATAGGCTGCGCCGGTCGGCGAGGTGACAAGCAAAGGACATACTGAAGTTACATTTTGGATGCGTGGATGCAGATGCGCATGGATTGCAGGTGTTGTATTGCCTATTTCCAACTCCTTGGAATATCCGTCAATGATTTAACACAATTTAAAGCTGATAAATAAGATCATGGGGGGAGATCAACTCGATGCCAACGCAAGCTGGAATTACATGCATAACGACTCAACCAAAATGTGGAGCGACAACGCATTCACAGCGCCTGTCATGGTCATTCTTTTGATGATGATGGTAACTTTGGTGGTTGTGATAGTTTTGGGAAACGCTTTGGTCATTTTCGCCTTTAAAGTAGACAAGAGTCTGAGGAGGCAAAGCAACTATTACTTCCTGAATCTCGCCATATCGGATTTTCTTGTTGGGGCATTCTGCATTCCAGTGTACATCCCATACATCCTGACAGGGAGATGGATGTTGGGCAGAGGACTGTGCAAACTGTGGCTGGTCATGGACTACTTGCTCTGTACTGCCTCTGTCTTCAACATTGTCCTGATCAGCTATGACCGCTTCCTCTCTGTCACCAGAGCGGTGAGCTACCGTGCCAGACAGGGCATGACCCACCAAGCCATCATGAAGATGATAGCAGTCTGGGTCCTGGCCTTTGTCCTCTATGGCCCTGCCATCATCTTCTGGGAGCTGGTGGTGGGGAAGAGCCGTGTCCCAGAGGATGAGTGCTACGCTGAGTTCTACTACACCTGGTACTTCCTCCTCAGTGCCTCCATGTTGGAGTTCTTCTCCCCCTTAATCTCCGTAACCTTCTTCAACCTCAGCATCTACCTCAACATACGTCGGAGGAGGCTCCGGAACAGAGATGAGACGAGTGGACAGGCCCACGCGCCTGATGGACAGCCCCCTCCCCTGGGGAGAGGGGAATGCCTCCGCCTCACTTCCCTCTTCTCCCGGAACTCGGTAGTGGTTAAGAAGCTGTCTAGCACTGTGTCGGTCCAGGAGAGGGGATCAGGCTCGGGGTCCTTCCACTCCCAGATCTTCCATCCCCCCTTGGAGCGGCAGGACACCTCCACTAGGGGCACACAGCGCAGCTGCCTGTCAAGGGACAAGAAGATTGCCAAGTCGCTGGCTgtcatcgtgtgtgtgtttgctgtgtgcTGGGCGCCCTACACCCTCCTGATGATCATCAGAGCCGCCTGTAAGGGACGCTGCGTCCAGCACCACTGGTATGAGGTCACCTTCTGGCTGCTGTGGCTCAACTCGGCCATTAACCCTTTCCTCTACCCGCTCTGTCACAGCAGCTTCCGCAGGGCCTTCGGCAGGATCCTGTGTCCCAGACGGAGGGCAACTCAGCTGGCCACCAACTGACCTGCAGCATGGCCAATCACTTAAGGGCCTCTACTGTATCATGTGATGGATAGGCCAGTAGCCAGAGAAGTGGTGACCCAAAGGAGATAATCAAGACTAAAACTGATACTTTAGCAATGAACATTTTTAATGGAACAAAACAGATTGTCTTAGATGTGATAGGCCAGTGGCCAGAGAAGTGGGGTGAATCTCGAAAGCCGAAATGACTCAAAGGTGATACTACATAAACTCAAAGGTGATACTACCCActggcacaaactggttgaatcaacgttgtttcaacgtaatttgtcaacGTCTTGTGACGTGGAATCTAAGTGGAAAATACAAAAAGTCATCAACTgatgttttgagggtgaaatttctaCAACAGGATTATGTCGCCATTGTAACCAAATTTCGACCTAGACAAaccttgtaaaaaatatataccttTAAAACATCTTTAAAAGATCTTCAATGTCATATCCACtaccaaaataagaaaaaaaacaataggctgggcagcacctcctactggagaatgTATTTCTGTACAGATTCCCTTTGGTCTCCTACCCAAGGTTTTAAACAAGCCCAGCCCTGCTTAGctatgatatttgtcactgactctTACCAGTGCGATATCATGAGAATGATTTTTGCGAGTTCTCCACTTAATAATGATATAGATTCGCTGTTGCTCTCAAAGTCATTCCAAAAAGGTAGGTTTTAAGTAGCAAATGAAAAGAGACCATACTTTATCACTCATGTACTGTATCATCAACGatgctatttaggcctatatacagtagaaTCTGTAAAGTCATCAACAGGTATTGTTTCAGTTCAGCAGGCCTAGGCTTTCAAACTCTGGTTGATTTGAAATGTAATGATATgtagtgatattgaattgtgtttggttgtcaacgcaaccagagatcaacatttgaaggagttGTATCTTCTTTATGTTCcgtctgtgccactgacttaatTCATCATTTCTATGTTTGATTCACGTCTCAAACTCAACCAAAAATCGAAGTTAAGGAataggatggagatggagaagtGAATCTAACATTATTTGTAGAATAACTGGAATTGAAGCCAGACTTAAGTCAGTCGTACAGTTGGAacattgtattttgtatttattaaggatccccattagctgcctccatccagggcagcagctactcttcctggggtccagcaacattaaggcaattatatacaattaaaaatattac
>TU838937
AGGGGCATTCTGCATTCCAGTGTACATCCCATACATCCTGACAGGGAGATGGATGTTGGGCAGAGGACTGTGCAAACTGTGGCTGGTCATGGACTACTTGCTCTGTACTGCCTCTGTCTTCAACATTGTCCTGATCAGCTATGACCGCTTCCTCTCTGTCACCAGAGCGGTGAGCTACCGTGCCAGACAGGGCATGACCCACCAAGCCATCATGAAGATGATAGCAGTCTGGGTCCTGGCCTTTGTCCTCTATGGCCCTGCCATCATCTTCTGGGAGCTGGTGGTGGGGAAGAGCCGTGTCCCAGAGGATGAGTGCTACGCTGAGTTCTACTACACCTGGTACTTCCTCCTCAGTGCCTCCATGTTGGAGTTCTTCTCCCCCTTAATC

Function

NR:

description
PREDICTED: histamine H3 receptor-like isoform X1

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004969 histamine receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052937.1 False 515 mRNA 0.43 2 67904516 67906729
XM_036986052.1 False 2359 mRNA 0.46 3 67904516 67924427
XM_021613439.2 False 2839 mRNA 0.46 3 67905049 67924427
TU838937 True 388 TUCP 0.54 2 67906377 67922622

Neighbor

gene id symbol gene type direction distance location
LOC110530969 LOC106569181 coding upstream 135030 67759384 ~ 67769486 (+)
LOC110530410 LOC106569184 coding upstream 177574 67693817 ~ 67726942 (+)
LOC110530407 LOC106569186 coding upstream 210874 67577845 ~ 67693642 (+)
LOC110530403 LOC106569190 coding upstream 430214 67430853 ~ 67474302 (+)
LOC110530401 LOC106599252 coding upstream 474445 67290677 ~ 67430071 (+)
LOC110530418 LOC106569175 coding downstream 261480 68185907 ~ 68198975 (+)
LOC118965633 NA coding downstream 550976 68475403 ~ 68506363 (+)
LOC110530424 LOC106569169 coding downstream 949010 68873437 ~ 68898424 (+)
LOC110529135 NA coding downstream 1080819 69005246 ~ 69006608 (+)
LOC110530427 LOC106569165 coding downstream 1094773 69019200 ~ 69045596 (+)
G738798 NA non-coding upstream 21402 67882863 ~ 67883114 (+)
G738793 LOC100380853 non-coding upstream 31008 67873275 ~ 67873508 (+)
G738367 NA non-coding upstream 99748 67802322 ~ 67804768 (+)
G738344 LOC106569180 non-coding upstream 128876 67773448 ~ 67775640 (+)
G738262 NA non-coding upstream 327410 67576771 ~ 67577106 (+)
G738832 NA non-coding downstream 180 67924607 ~ 67983064 (+)
G738835 NA non-coding downstream 3083 67927510 ~ 67928146 (+)
G738866 NA non-coding downstream 65611 67990038 ~ 67992670 (+)
G738972 NA non-coding downstream 238967 68163394 ~ 68167270 (+)
G739188 NA non-coding downstream 285884 68210311 ~ 68210548 (+)
G738244 NA other upstream 356907 67546129 ~ 67547609 (+)
G738020 NA other upstream 672603 67231182 ~ 67231913 (+)
G737783 NA other upstream 688887 67170467 ~ 67215629 (+)
G737234 gs02 other upstream 1102436 66798573 ~ 66802080 (+)
kncn kncn other upstream 1200431 66699211 ~ 66704200 (+)
G739648 NA other downstream 933956 68858383 ~ 68858753 (+)
G739670 NA other downstream 978938 68903365 ~ 68906965 (+)
G739708 NA other downstream 1079910 69004337 ~ 69005116 (+)
G740827 ripk1 other downstream 1611973 69536400 ~ 69538276 (+)
G742095 NA other downstream 2701794 70626221 ~ 70626744 (+)

Expression


Co-expression Network