LOC110530418 (LOC106569175)


Basic Information

Item Value
gene id LOC110530418
gene name LOC106569175
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 68185907 ~ 68198975 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613468.2
AATGCTCCGGAAAGGAACCAAACAGCGCTGGAAACGTCTGTATCAACCCCTTACAATGGTTCCGAACCACACTTATGAAATATTTTCGAGTTATGGAGAGTGAAATAAAAAGTTGCACTTGGATAACTTTGAAATGGTGGGCATCAGGGGCAAAGACATTGTTGTCCTTGGCGTTGAGAAGAAGTCAGTGGCCAAGCTGCAGGAGGAAAGAACAGTCCGCAAAATATGCACCCTAGACGACCATGTCTGCATGGCATTTGCAGGCCTGACAGCAGATGCCCGCATCGTGATCAACAGAGCTCGTGTGGAGTGCCAGAGTCACCGGCTCACTGTGGAGGACCCAGTGACCGTGGAGTACATCACACGACACATCGCCACCCTGAAACAGCGCTACACTCAGAGCAATGGACGCAGACCGTTTGGCATCTCTGCCTTGATCGTGGGTTTTGACTGTGATGGGACCCCCAGGCTCTATCAGACTGACCCCTCTGGAACTTACCACGCATGGAAGGCAAATGCGATTGGCCGTAGTGCTAAGACGGTGAGGGAGTTCCTGGAGAAGAACTACACAGATGAAGCCATCGCCACTGACAATGAGTCGATAAAGCTGGCCATCAAAGCCTTGCTTGAGGTGGTTCAGTCTGGTGGGAAGAACATTGAACTTGCTGTAATTAGAAGAAACCAGCCACTGAAGTTATTGGAGTCCAAAGAAATTGAGACTCTGGTGactgagatagagaaagagaaggaagatgAGGCAGAGAAGAAAAAACAGAAGAAGTCTACTTGAAGTCATAATAAAACTCTGGCTTTCATTCAGCACTTGCTTAAAGGCAGCATATTTGGTCTGCTAACATCAAAATGTGTTTACAAGCCCCAAAACAGCTTTCATGTCACACGCTAAGGGCAGAATCTTAACTTGATGTATGTTGAATTAGTCACATCTCACATTGCCATCAATGCATTGTTTATGTGGAAATCTAAGTCAAATGTATggatctcaagttaggattcagACCTACAATGAGGTCTCCCCTCTGCCCACTTAAGGTATGTTGTTGAACTTCTTTGAAGTGAATGTTATTGGATCAAAATGCTTAATAAAGTCAACTTGTTCATGTA
>XM_021613466.2
TAGGTCCGAGTTCAAGCGCATGCGCTCTGTGAGTGTACACAAAAACTGACTAGAAAACATTCTAGCTGAGTAGCTACACAGATTTCACTGCATTTGTTTCTAGCAACAACATAATGGCAGCAAGATATGACAGGGCGATCACAGTGTTTTCTCCTGACGGTCACCTTTTTCAGGTGGAATATGCGCAAGAGGCTGTGAAGAAAGGCTCCACCGCTGTGGGCATCAGGGGCAAAGACATTGTTGTCCTTGGCGTTGAGAAGAAGTCAGTGGCCAAGCTGCAGGAGGAAAGAACAGTCCGCAAAATATGCACCCTAGACGACCATGTCTGCATGGCATTTGCAGGCCTGACAGCAGATGCCCGCATCGTGATCAACAGAGCTCGTGTGGAGTGCCAGAGTCACCGGCTCACTGTGGAGGACCCAGTGACCGTGGAGTACATCACACGACACATCGCCACCCTGAAACAGCGCTACACTCAGAGCAATGGACGCAGACCGTTTGGCATCTCTGCCTTGATCGTGGGTTTTGACTGTGATGGGACCCCCAGGCTCTATCAGACTGACCCCTCTGGAACTTACCACGCATGGAAGGCAAATGCGATTGGCCGTAGTGCTAAGACGGTGAGGGAGTTCCTGGAGAAGAACTACACAGATGAAGCCATCGCCACTGACAATGAGTCGATAAAGCTGGCCATCAAAGCCTTGCTTGAGGTGGTTCAGTCTGGTGGGAAGAACATTGAACTTGCTGTAATTAGAAGAAACCAGCCACTGAAGTTATTGGAGTCCAAAGAAATTGAGACTCTGGTGactgagatagagaaagagaaggaagatgAGGCAGAGAAGAAAAAACAGAAGAAGTCTACTTGAAGTCATAATAAAACTCTGGCTTTCATTCAGCACTTGCTTAAAGGCAGCATATTTGGTCTGCTAACATCAAAATGTGTTTACAAGCCCCAAAACAGCTTTCATGTCACACGCTAAGGGCAGAATCTTAACTTGATGTATGTTGAATTAGTCACATCTCACATTGCCATCAATGCATTGTTTATGTGGAAATCTAAGTCAAATGTATggatctcaagttaggattcagACCTACAATGAGGTCTCCCCTCTGCCCACTTAAGGTATGTTGTTGAACTTCTTTGAAGTGAATGTTATTGGATCAAAATGCTTAATAAAGTCAACTTGTTCATGTA
>XM_021613467.2
TTCTAGCTGAGTAGCTACACAGATTTCACTGCATTTGTTTCTAGCAACAACATAATGGCAGCAAGATATGACAGGGCGATCACAGTGTTTTCTCCTGACGGTCACCTTTTTCAGGTGGAATATGCGCAAGAGGCTGTGAAGAAAGGCTCCACCGCTGTAAGTTTATGAAGGTGGGCATCAGGGGCAAAGACATTGTTGTCCTTGGCGTTGAGAAGAAGTCAGTGGCCAAGCTGCAGGAGGAAAGAACAGTCCGCAAAATATGCACCCTAGACGACCATGTCTGCATGGCATTTGCAGGCCTGACAGCAGATGCCCGCATCGTGATCAACAGAGCTCGTGTGGAGTGCCAGAGTCACCGGCTCACTGTGGAGGACCCAGTGACCGTGGAGTACATCACACGACACATCGCCACCCTGAAACAGCGCTACACTCAGAGCAATGGACGCAGACCGTTTGGCATCTCTGCCTTGATCGTGGGTTTTGACTGTGATGGGACCCCCAGGCTCTATCAGACTGACCCCTCTGGAACTTACCACGCATGGAAGGCAAATGCGATTGGCCGTAGTGCTAAGACGGTGAGGGAGTTCCTGGAGAAGAACTACACAGATGAAGCCATCGCCACTGACAATGAGTCGATAAAGCTGGCCATCAAAGCCTTGCTTGAGGTGGTTCAGTCTGGTGGGAAGAACATTGAACTTGCTGTAATTAGAAGAAACCAGCCACTGAAGTTATTGGAGTCCAAAGAAATTGAGACTCTGGTGactgagatagagaaagagaaggaagatgAGGCAGAGAAGAAAAAACAGAAGAAGTCTACTTGAAGTCATAATAAAACTCTGGCTTTCATTCAGCACTTGCTTAAAGGCAGCATATTTGGTCTGCTAACATCAAAATGTGTTTACAAGCCCCAAAACAGCTTTCATGTCACACGCTAAGGGCAGAATCTTAACTTGATGTATGTTGAATTAGTCACATCTCACATTGCCATCAATGCATTGTTTATGTGGAAATCTAAGTCAAATGTATggatctcaagttaggattcagACCTACAATGAGGTCTCCCCTCTGCCCACTTAAGGTATGTTGTTGAACTTCTTTGAAGTGAATGTTATTGGATCAAAATGCTTAATAAAGTCAACTTGTTCATGTA

Function

NR:

description
proteasome subunit alpha type-7-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613468.2 False 1122 mRNA 0.46 7 68185907 68198975
XM_021613466.2 False 1201 mRNA 0.46 7 68186079 68198975
XM_021613467.2 True 1156 mRNA 0.46 7 68186138 68198975

Neighbor

gene id symbol gene type direction distance location
LOC110530413 NA coding upstream 261480 67904516 ~ 67924427 (+)
LOC110530969 LOC106569181 coding upstream 416421 67759384 ~ 67769486 (+)
LOC110530410 LOC106569184 coding upstream 458965 67693817 ~ 67726942 (+)
LOC110530407 LOC106569186 coding upstream 492265 67577845 ~ 67693642 (+)
LOC110530403 LOC106569190 coding upstream 711605 67430853 ~ 67474302 (+)
LOC118965633 NA coding downstream 276428 68475403 ~ 68506363 (+)
LOC110530424 LOC106569169 coding downstream 674462 68873437 ~ 68898424 (+)
LOC110529135 NA coding downstream 806271 69005246 ~ 69006608 (+)
LOC110530427 LOC106569165 coding downstream 820225 69019200 ~ 69045596 (+)
LOC110530428 LOC106569166 coding downstream 847436 69046411 ~ 69116995 (+)
G738972 NA non-coding upstream 18637 68163394 ~ 68167270 (+)
G738866 NA non-coding upstream 193237 67990038 ~ 67992670 (+)
G738832 NA non-coding upstream 202843 67924607 ~ 67983064 (+)
G738835 NA non-coding upstream 257761 67927510 ~ 67928146 (+)
G738798 NA non-coding upstream 302793 67882863 ~ 67883114 (+)
G739188 NA non-coding downstream 11336 68210311 ~ 68210548 (+)
G739190 NA non-coding downstream 12857 68211832 ~ 68212448 (+)
G739192 NA non-coding downstream 14689 68213664 ~ 68214103 (+)
G739206 NA non-coding downstream 27004 68225979 ~ 68226203 (+)
G739210 NA non-coding downstream 27756 68226731 ~ 68226948 (+)
G738244 NA other upstream 638298 67546129 ~ 67547609 (+)
G738020 NA other upstream 953994 67231182 ~ 67231913 (+)
G737783 NA other upstream 970278 67170467 ~ 67215629 (+)
G737234 gs02 other upstream 1383827 66798573 ~ 66802080 (+)
G739648 NA other downstream 659408 68858383 ~ 68858753 (+)
G739670 NA other downstream 704390 68903365 ~ 68906965 (+)
G739708 NA other downstream 805362 69004337 ~ 69005116 (+)
G740827 ripk1 other downstream 1337425 69536400 ~ 69538276 (+)
G742095 NA other downstream 2427246 70626221 ~ 70626744 (+)

Expression


Co-expression Network