LOC110530424 (LOC106569169)


Basic Information

Item Value
gene id LOC110530424
gene name LOC106569169
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 68873437 ~ 68898424 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613481.2
AACCAAGCTTCATCTTTTGCCTCGCCCTTTCTGTAATCTGCCTATGAGCGATGCTGTTGTGAAACTAGTTGAGAGACGCCGCCTATTGCAGTCTGTATAATCAAAGAATAAAGAGTTTACAATTTCGAAAAGGCCGAAGTTGATGTAGGCTACAACAGAAAATACTGAGCAGCAGATTTAAAGGATTAGGCTACACTTCAACAGGGGAGCATTTTACCTAAATCAACAATCATTCCAATGGCCCGTGTAGCCACAGCCACTGTTTTATTATTGCCGTTCATACTAACGTTTTTATGTGTGGTGGCAGCAGAAGGCGGTGGGCTGAAGCTGAGAAGACAGAAGAGAGAATGGATCATTCCTCCtaagaggttgaaggagaatgtAGATTACACCAGCCAAGAGTACATTGCAAAGATTCGCTCTGATGAGCAGTACACGTCAAAGGTGACTTACTCACTGACTGGGATCGGTGCAGACCAAAACCCCAGGAGCCTATTCACTGTCAACCCAAATACAGGCCTGGTCAGAATCAATGGAATTctggacagagagaagatacCTTCCTACCATTTACTTGGAGTAGCGACATACAACAATGGAAGCAAAGCAGAGAAGGACATTGACCTGCGTATTTCCGTTGAGGACCAGAATGACTGCCAACCAGTGTTCGTTTTTGGCCAATCTGGATCTGTTAATGAGTCCAGTGTTGCAGAAACCGTTGTCATGAAAGTTTTAGCCACAGATGCAGATGAAGTGAACACGCTACACTCTCAGATTTACTATAGCATAGTGCAGAAGAGTTCTTCAGATAGCATGTTCGCCATCAACTACCAGACTGGAGAGATCATGGTTCGCCAGACTACGCTggacagagagACCCAAGACACCTATACCCTGACTGTAAAAGGCTCAGACATGAACGGAGCAATGGGTGGAAACTCAGGAACAGGACAGGTGGTGATTAAAATCCTGGACATCAACGACAACATCCCCACCCTGGAGAAAGAATCTTACGAGGGGAGTGTGTTGGAGAACACGGTCAATGTGGAGGTGCTGAGGATCAAAGCCACTGATCTGGACCTGATGTACACTGAGAACTGGCTGGCTGTGTTCACCATCATCACAGGCAACGAAGCCGGCTACTTCACCATCACTACCGACTCCAAGACCAACGAAGGCATTATTATGATAACCAAGGCACTGGACTACGAGGAGCTGAAAGTGCTCAACCTTGCCATAAGTGTTTCCAACAAAGCAGTGTACTACTTTGGCTCCTCTTCTATGAgtggagggataggaggaggaggggttgcaGGCGGGGTTATGACGGGCGGTGGTAAGACCTACCCCATCAAGATAAATGTGATCAACCAGAAAGAGGGCCCCAAATTCCAGCCAATGGTTAAAGTGGTGACCATCTCTGAGGACTCCACCACAGTCACCATTAACAAGGTCATCACTACCTACGCAGCCATCGACAGTGACACACTACTGACTGCTACCAATGTTAGGTATGCCAAAAAATCCGATGTAGACAACTGGCTGATCATAGATGAAAAGACAGCAGAGATCAAGCTGAACAAAGTGCCTGATCGGGAGTCCAAATACCTGGTCAATGGAACATACTACGCCAAGATAATAGCCATCACAACCGATCTGCCATCCAAAACGGCCACAGGGACAATAGCTATCCAGGTGGAGGACTTTAACGACCACTGTCCCATACTGACAGCTACGGCTACGACCATGTGTCTGGGGGACACCATTGTGTATGTCAAGGCTGTGGATGGGGACACCTTCCCCAATGGAGCTCCCTTCAAGTTCAGAGTGATTCAGGGGGACAGCAAACAGAAGTGGACAGTGGAGCACCTCAATGCTACCACTGCCATTTTACGAGACCATGCCCACATGTGGCCAGGTCACTACAAGGTTGCTGTGGAGATCAGTGACCAGCAGGGGAAGGCCTGTGCTGACATCCAGATTCTGAACGTGGATGTGTGCACCTGTGATCAGGTCAATAAGGTCTGCTTCGCCCGGGAGATGGGTAAGGACGTCACATTAGGAGCATCTGCCATCCTGCTGCTCCTTCTGGGCCTCCTGCTGTTGCTGCTGGTGCCCCTCctgctgctgttctgtctgtgtggAGGAGTGGCGTCCATAGGTGACTTTAAGGCCATGCCATTTGACACTAAAGAACACCTGATTCCATATCACACCGAGGGACAAGGAGAAGACAAGGAAATTCCACTCCTGCAAATTCCTGTGGCGATAGATGGCTCCATCAAAGTTGTTGACTTGGCAAACAACGGGGGGGGGATGGGATTAATAAGAGATGCAGGGGCTGCAGGAGGATCAGCAGGAGGAGTGTTCGGGGACGGCTTCACCCCGTCCGCAATAAGCACATGGGAGCACAACCATTCCCATGGCTCCCACCAGCCCAGCGGCAGAGTGAAGGTGAGCTACGGCGTGGGTGGAGGAACCATGACTGGACATGAACACTTTTCCAGATATGGAGCTGGAGCTTATGACGGGGTCGCTCTCTCCGAGGGAGACCTAGAGGAGTACTACTCTGCAAAGGCCAATCATGCTGCGCAGAACGACCAGCAGAGAGATGACCTACTGATCTACGACTACGAAGGTCAGGGGTCACCGGTAGGCTCTGTTGGCTGCTGCAGCCTCCTGGGGGCCGATGACGACCTGGACTTCCTCAACGACCTGGGGCCCAAGTTCAAGACCCTGGCCAAGATCTGCCAGGGGTCAATAGCTATGGAGGCGGAGACTGTCAACATGTCTGTGTCATCCCCTAGACCTAGGCCTAccacatccacccacacagaggTCAATAGAGACACAGCTCTCAATGTCAATACCCTGAACACCtcatccaccacctccacctcctccacaccccTACAGGAGAACCTGGTTACTCGGGCCCAAGGATCAGCCACCATCCGCAAGGTTCAGGAGAACAAGGTGATGCCCAACAAGACCCTCTTCATCCAGCAGCCCCCTATGTACTACGCTGCTGCCCCCACCATGTACATGGTGGAGCCCCAGCCCCAGTTGGTGCTGGtggagcagagagggggaggtggttaTGTCCGTGCCCAGCAGGCGGTAAGCCAGGTGGGGGTAGGGATGGGTCAGGGGGTGGTGCAGGTAGGAGGGCTCCATGGTTCTCAGGGCATGATTTTACTGGAGAGGCAGGTAGGAGCAGGTGGTAGTGGGGAAGGACAAGGTCATGTTGTTATGGGGGCAAGCCAGGTCTTACAGGGAGCGGGCCACACTATTTTGAGGGGAGGTCACATTATTACAGAGACGAGCCAAACCATTACACGGGGAGGCCAGGTTCTACAGGGGGCAGACCAGACCATGATCGGAAAAGGCCATCTATCGCCAGGAGGAAACTTCTCACAGGGAAGCCTTTCCGGGTCCAGGAAAGTGCTGGTTGTTGAGAGCGGGTCTGGGTCAGCCTCGGCAGCAGGGTGCAGCGCAGGCTTAGGTGCTGCCCAGGTCACCATGCTGCAGAGCggccaggggttagaggtcaaatGTCATAGTGTAGAAGTGAGAGGTCAGAGTGGTGCTTCCTCGTTGAGCTCCAGCTCCCTGTGTGGCACGGCAGGGTCAAACGAGGCCTCTGCTACTGCTGTCAAAGTCACCACCACACCCACAGCTGCACCCTGTAGCAGCAGCCACACAGCTGTGGTGCAAGAGAAGAAAATATCGGTCACTGAGAAATACGTTGAGACCAGTACTATAGCGTAGAAAAACAACTTCACATCAGCTTGATAAAATACTGTACACTGTGGGTTTAAAGGTGATttctagggagagagaaagagatagagagatagaggtactGGTGCTTTCTGCTGGTCTGACTGGTGCTCTCTGCTGGTCTGAAATACAGGAATTCTACCCATTGTTTCTTAACAACTCTTTTATAACACTTTTAGATTTTATTCTCACGATTACCAGATGGTATATAATCCTAATTATGATTCATTGATACATTGTGAATTAATGATTGAGTTGAAGATACTTGATTACAGAAGAAGAAATTGAATAAAAAGAATGAAATCATGGAATCGAATCAGTATTTGAAAGGAGTGAAATATTTTTCTAAACATTCAAATGTTGTGGTGGGTGATGTATTAATTGTTCAGGTGAGAAAATGTGTCTATCTTTGATAAAGCTTTTTTTACTGGGATTGTCAATTCTTGATGTAATTCATAGTTCAGACCTTCCATTATCAATTCTACACAGTTTCAATTTGGTTTTAGTAATTTTAATGTATATTGATAACATACTGTGTTATCAATAGTTCGTATCCCCCcacaaattatatatatatatatttattgttgtttttttactcaAAGAACCCGCGGCCGTTATGTTAGACACCCCTGCATTAAAGTTTGAGATTGATGTTGACCTGGCTGCAAGCTTTCATGTctaatatattatactgtatgcGTCATGAGATATGGCGTCTGCCTGCAGTATGTCTGTCCTTCATTGTGAGCTAAAAGGTTTGATGAAATGTTTTCTGATTTTGAGAGAATAATAAACTTGAACATATACCATACACATTCAGTTAGTCATGTGTTATGGTTTCATGCAATTTCTTTCTTAGAATCTCACTCCTGTAGTGTTTCATTGGTTCTTCTGGAGATTGAGAGTGGAAAATTCTGTTTTATAGTATCACTCTTATCACACCTTGACATCTTTACATACTGTAGTTCAGATGTTATCACTGCTCAACCGAAAAAATTAATAAAGATGGCTCTACCAAA

Function

NR:

description
cadherin-4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613481.2 True 4805 mRNA 0.48 14 68873437 68898424

Neighbor

gene id symbol gene type direction distance location
LOC118965633 NA coding upstream 367074 68475403 ~ 68506363 (+)
LOC110530418 LOC106569175 coding upstream 674462 68185907 ~ 68198975 (+)
LOC110530413 NA coding upstream 949010 67904516 ~ 67924427 (+)
LOC110530969 LOC106569181 coding upstream 1103951 67759384 ~ 67769486 (+)
LOC110530410 LOC106569184 coding upstream 1146495 67693817 ~ 67726942 (+)
LOC110529135 NA coding downstream 106822 69005246 ~ 69006608 (+)
LOC110530427 LOC106569165 coding downstream 120776 69019200 ~ 69045596 (+)
LOC110530428 LOC106569166 coding downstream 147987 69046411 ~ 69116995 (+)
LOC110530431 igfbp-3b1 coding downstream 237147 69135571 ~ 69148676 (+)
LOC110530432 LOC106569162 coding downstream 365098 69263522 ~ 69354693 (+)
G739638 LOC106569170 non-coding upstream 17413 68845040 ~ 68856024 (+)
G739634 NA non-coding upstream 43852 68829288 ~ 68829585 (+)
G739633 NA non-coding upstream 44394 68828788 ~ 68829043 (+)
G739624 NA non-coding upstream 55738 68817499 ~ 68817699 (+)
G739622 NA non-coding upstream 57091 68816119 ~ 68816346 (+)
G739735 NA non-coding downstream 100748 68999172 ~ 68999388 (+)
G739736 NA non-coding downstream 101747 69000171 ~ 69000626 (+)
G739710 NA non-coding downstream 105093 69003517 ~ 69004130 (+)
G739746 NA non-coding downstream 147178 69045602 ~ 69045872 (+)
G739748 NA non-coding downstream 219139 69117563 ~ 69119121 (+)
G739648 NA other upstream 14684 68858383 ~ 68858753 (+)
G738244 NA other upstream 1325828 67546129 ~ 67547609 (+)
G738020 NA other upstream 1641524 67231182 ~ 67231913 (+)
G737783 NA other upstream 1657808 67170467 ~ 67215629 (+)
G739670 NA other downstream 4941 68903365 ~ 68906965 (+)
G739708 NA other downstream 105913 69004337 ~ 69005116 (+)
G740827 ripk1 other downstream 637976 69536400 ~ 69538276 (+)
G742095 NA other downstream 1727797 70626221 ~ 70626744 (+)
G742860 NA other downstream 2797178 71695602 ~ 71715616 (+)

Expression


Co-expression Network