LOC110530434 (LOC106569160)


Basic Information

Item Value
gene id LOC110530434
gene name LOC106569160
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 69355850 ~ 69434566 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613493.2
GCGTAAGAGGTCGGCCGACATTAATTTCATATTCTGCCATAGTATTTTGGTCTAAATGAGACACAGTCACGTCTCCGCCCTTGTACCGATCTCTCACTTCGAGTCCGACCTGTTTTTAGCGGATTTCCTCTGAAATGTTTTCGGGAACGCAGGGGAGATTCCAACTGGAGCGCGGAGGCAAAGAAGGGAATGAATAGTGGGATAAGTACACCACCCAACCGGCGGACATTTGTTGTATTGTGTTCCTATTGTCGCGCTTTTTTAATGTAGAAGGCTGATGTTAAGCCACGTACGCACAGATATCTAGTGTACTTTTCATTTGGTAAAATGGAAAGTGCGCGGGCTGTCGTTGACGAAGGCTTGGCAGATAGAACTGCAACTAAGTTTAAGAAGCCTAGCGGACTGTCTGTCGCCCAGTGGACGCCAGCGGATGATGGTGGTGTACATTTGACGGCCTCTCGTTTAGATATTAGAAATGGGAACAATCCCTCTCAGGCTGCAGTGGGTTCTAGTGCTTCGATTAAAAGTAATGGAAGCACATCTACGAATGGCCGGAGTTTATCCAGTAACTCCAGCTCGCTCCTGTTGAGACGGAGGAGGCTGAAGAGGAACCTCTCCGCTGCAACCACATCGGCTGTCACTGCCGCCTGCGGCGCCAAGATGAACTCGACCCTCTCCTCTGCGTCTCTGCATACTCGGAGTCTGGATAGGAAGACGTTGCTGAGGCATCGGCAGAACATGCAACTGCAGCCTTCAGATAGAGAGTGGGTGCGAGTGGATCTTCACAGGGGATCCATACATGTCCACGACAAACTCACCTCGCCGTCATATCCTAGGCCGGTGCTGTGCACGATCGATACCACCGCTGGCGACATGGCGCTCCGTATGAGCAAACTCAGTAAGTCGAGCTCTGTATTGCGTATATTTTGTAAAGACAACCTAAAGACGGATCAAAACGGAAACTGTAACGTGAAGTATCTATATGACAGTCAGTGCAAACTTATTGAAGACGGTAACGTTAATATTAAGTGCAACCATTCGGGATCCCCAGAACTCAGGGGAGGCCTATCAGACAAGGCAAGTGACCGGTTGAGATTACTGCTTATGGAGAACGCCGATGAGTTGCAAAAGCAACAGGATGAAAAACTTTTGAGTCCGGACTCAGATTCAAAAGATAATATAACTCACTCGTTGTCGGATCAAAATTCGAATTCTAACCTGGATACTCCAAACGAGGATGATCCAGAACAGCGGCTGAACGGAGTGGACAACTACGGGCTCAATTCTGGTTCGGACGTGGAGAGCAGCAGCGCATTCGATGACCTCAGCATCTCGGGGGCTCGGCTCAGTGAGCACCGGGACTCCCTCAGCGACGACATGATCCTGGGCACAGACGCATCCATCCTGAGCCCTAGTTTTGACAGCGCCACGGAGGGCCACGACACCTATGGCAGCTCCTCAGACGAACTGGAGCTCGACTGTCCTACCACAAGCATTGACCCTATTCTCCCGAATGGCAACACAGTCCCTGCCAACTACACGTTTAGCAACGGTGGGCATTTAAACGACTTGACAGAGGATACGGGAGCAGGTAACAGACTCGGCCTAAGCAGGCTGCCACCCAGTAGTAGCGGTAGCTCATTGTCCCGAGCCTGTTCCACAGGTCATAGGCCCGACATCCAAGACCCTGACAATCGCCAGCGTGCTTTGAAAACAGGTTCGGCAGAGGCTGATGAGGATAGAGAAGCAGCAGGTGACACGAGTCCCACACTTTACGTTCAGCTCCACGGTGACGCTGTCAGGAGGCTCGGGCAAGACGAGAGGCCTCTCCAGATCCAGAATGACTTTCTCTTTAAACTGGGATTTAAGGATCCGTGGCGCGTGCAGGAGGAAGGGATGAACACCGAGATCGGCTCCCTGTTACGGTTTTACGCAGGGAAGCCCCACAGCATTGAGAGCTCGGAGCGCGTACAGCTGTCGGGGACCTATAACGTCCGCAAAGGGAAACTCCTGCTACCAGTAAACCGGTGGACCAGACGCCAGGTCATCCTGTGTGGCACCTGCCTCATCGTCTCCTCCGTCAAAGACAGCCACACGGGCAAGATGCACATCCTGCCCCTCATCGGAGGAAAGGTGGAGGAGGTGAAGAAGCACAGCCACTCCCTGGCGTTCAGCTCAGCAGGGCCCCAGAGCCAGACCTACTATGTCAGCTTTGACAGCTTCACTGAACACCTGCGCTGGCATAGACACGCGTCCAAGATGGTGTCCCAGAGGATCAACTCTGTGGACTTGTCCTGCTGCAGTCTGGAGCAGCTGCCTCCCAACCTCTTCTACAGCCAGGACCTCACCCACCTCAACCTCAAACACAACTTCCTCCCCACAGACCACCGTCTACACCAGCTACAGAGGTTCTCTCGTTTGCGGAGCCTCAACCTGTCTAATAACCAGCTGGGTCAGTTCCCCATGGCCATCTGTGACATCTCCACCCTCACCGAGGTCAACCTCAGCTGTAACTACCTGACCAACGTGGACCAAGCTGTGGGATCCATGACCAAtCTGCAGACGTTTCTCCTGGACGGTAACTGTCTGAGTGAGTTACCCAGTGAGCTGGGCTCTCTCCAGAGACTGGGCTACCTGGGCCTGTCCTTCAACCAGTTTACCCACGTGCCCCAGGTGCTGGAGCGGCTGACCTCCATGGAGAGACTGTGTATGGCTGGAAACAGCCTGGACACACTGGTGCTGCAGAGCTTCAGACTGCTCCGGTTCAAACATGTCGACCTACGGCTGAATAAGATCCGGGTGGTGGTTCCAGACGAGCCAGACCTGCTGAGACACGTGACCCAGCTGGATGTGCGTGACAACGGGCTGGAGGAGCTGGATGCCTCCCTGTTTCCCCACCTGGAGGTCCTCCACTGTGAGAGGAATCACATTGTCACCCTCAAGGCCAAGGGCTCTATGCTCAAGGCTGTCTACGCACAGAACAACGATCTACAGGAGCTAGATGTCAGTCCAGTGCCATCCAACCTCACCTACATGGACATCTCCAGgaATCATATGGAGGCTGTCCCAGAGTGGCTGTGTGAGATAAAGAAACTAGAAGTTCTGGACCTCAGCCACAACCTTGTTACTGAGCTCCCAGCACGGTTGCTGTGTAGCAGCAGTTTGAGGAAGCTGAGTGCAGGACACAACCACCTGCAGAAGCTGCCTGAGAGAGTAGAGCGCCCACTACTGGAGGTATTAGACGTACAACACAACCAGCTAGCAGAGCTGCCCTGCAACCTCTTCCTCAAATCTGACAGTTTGCGGTGCCTGAATGCCTCGGCCAATAAGCTCGAGCACCTGCCTCCCTCCAGCCTATCAGAGGAGAGCAACAGCATCCTCCAGGAACTGTACCTCACCAACAACCGACTGACTGATAAGTGTGTTTCCTTACTGACGGGACACACACACCTCCGAGTACTACACATGGCCTACAACTACCTGCACACCTTCCCTGCCAGTAAAATGGCAAAgttggaggagctggaggaggtggaCCTGAGTGGGAACAGGCTCAAGACGGTGCCCACCACCATCATGAACTGCagacgcatgcacacactcatTGCCCACTCCAACACCATAGAAGTCTTCCCTGAGGTCATGCAGCTTATGGAGATGAAGtgTGTAGATCTGAGCTGTAATGAGCTGAGTGAGATCAGCCTGCCTGAGATCCTGCCTCCTAAACTCCAGGAGCTGGACCTGAGTGGCAACCCTCGCCTCAACCTGGACCACAAAACCCTGGAACAACTCAATAACATCCGCTGTTTCCGCATCGACCCGCCCCCGACCTTCTCAACCAATGAGGCGTCAGGTGGGCCGGCTGTGTGGAGTCATGGTTACACAGAAGCCTCGGGTGTCAAGAACAAGCTGTGTGTGGCTGCCCTGTCGGTGAACAGTTTCGGTGGGAGTCGTGAGGCCCTCTATGGGGTGTTTGATGGAGATAGGAACGTGGAAGTGCCCTACCTGCTGCAGTGTACCATGAACGATGTGCTGGCCGAGGAGCTACACAAGACCAAGAGTGAAGAAGACTACATGACCAACACCTTCCTCGTCATGCAGAGGAAGCTGGGTACGGCAGGGCAGAAGCTGGGTGGCTCGGCGGCCCTGTGCCACATCAGACACGACCCCACCGACCCGGGCGGCTGCTTCACCCTCACCGCTGCTAACGTGGGCAAGTGCCAGGCCATCCTGTGTCGAGACGGCAAGccactgcccctctccctcctgcacAACGTAGGCCTGGAGGAAGAGTACCGACGCATCAGACAACACAACGCCATCATCACTGAGGACAACAAGGTGAATGGAGTGACAGACTCCACCCGTATCATGGGATATTCCTTCCTGTACCCGGCAGTGATCCCACGGCCCTACGTCTGCACGGTAACCCTCACCCCGCAGGACGAGTTCTTCATCCTGGGAAGCCGTGGCTTGTGGGATGCCGTGTCAGCGTCGGAGGCGGTGGAGGCGGTGCGTAATGTCCCAGATGGCCTGGCTGCAGCCAAGAAGCTGTGTACGCTGGCCCAGGGCTACGGCTGCACCGACAGTCTCTGTGCCGTGGTGGTGCAGCTCTCTGTGAGTGAGGACTGCTGTTGCTGCAGAGACCATCCCCAGCCGCCCCCTAGCCCTGTATTGGGCGGCTACCCCTCTTCGGGGGGTTCGTCGATAAAGGAGCGACCCACAGGGGACGgctccctccctgtccccccgTCCTCCTGCAGTGAGATCAGCAGTGAGATCAGTACTAGTGAGATGAGCAGCGAGGTGGGATCCACGGCCTCCTCTGACGAGCCTCCTCAGAGTTCCCTGGGGCTGCTGCATgaacaaccccaccaccaccagctcCACCTGCACCACCAGGCCAACCAGCTCTCCCTGCAGGCCCAGCACGCTGCCCAGCCCTGCCCCTACCCTCACCCAGGCTCGGAGCTCCCTGCCCGGGGCTGCTGTGCTCTCCACCCTGCCTGTCTGACCGGATCCTTCCAGAGGCAGCTGTCCAGCGCCACCTTCTCCAGCGCACTATCTGACAACGGGCTGGACAGTGAGGACGAGGAGCCCATCGCCGGGGTCTTCTCCAACGGGAGCAGAGTGGAGGTGGAGGCCGACATCCACTGCCTTAGGGTTGAGGCCTCTTTATCATCGTCAGGACGGGAATGCTTGCtggcccctcctccacctcctccaccctgcACCCCGGAACCACTGGAGGAAGGGGTGGAGCTGACCCTGGGGGAGGCGGATATGAGGGAGGATAGAGAAGAGGGCTGGTCAGTGGGCTGCGGCAGACCGGGTGATGACGGGAAGGCcatggggaagaggagggggaacgGCTCTGTGGCCCCCCAGGAGAAGAGCCACAACCTGATCGAGGTGGCAGCAGACGCCCCATCTAAGAAGGGAGGGGGATACTTCACAGCCCCCGCCCAGCCCGACCCAGACGACCAGTTCATCATCCCTCCAGAGCTGGTGGAGGAGGTCAAGGAGATCATGAAGCAGCATCAGCAGAAGCAACAGAAAACACCTAGCCCCGACCAGCCTGCAGACTACTAGGACTGCAGGGAATTAGGACACACCCCGAAATCCCTACAGTGGAGAATCGCTACAGAGTCTTCGGACTAGCTGAGTAACCTATGTATCTGAAAAACAGCACCTTGCTGAGATGTCTACAGGCTACAATCACTCAACCCCTTTCCTGAGACCACAGCACTAGAGTACCAAGCACTGTAACCTGCTCCAACCCTTTCCCCAAAGTGACCTATAGAATAGGACATGCAAATGAGCCCTTTAAGATAACCCAACCCTATTGGGTATCCTACTTATGGACACACCTTTTATGGTCCAAAGTAGTTCCACTACTACTCACAGACAGACTGTGCGGAACGTTGTTTTTACATTAGACAACGAACCAATGAGTACCTATGTAATCAACACTAGTCTCTCTGCAAAAGGGTTAGCCTCTCACAACACACAGTTATGGATATGATGCCGTTGTTTTTTTACTTACCATATCTTTTAATGTAAAGAAAATTAAGTTGCTGAAAAAACCTTGTTAAATGAAACATGGAGAACAATCTTTTTTATTATCAATGAAATACATTTGAATGGTACACACCAATAATACCACGCTTAACTGTTGTAGATGGGGCACTTGATAAAACTCTATTTCTTCAGTAAATCATGGCTCTTGGCCTGTACAAAAGGCATAGACATTTTTGTAGAAATTTGAAAGACTAACTCTTAGGAGTTGCATACTCTTTATGGTGACCTAGTCACTTTTACTAATCTTCTCTGAGAgaaattgtgattttttttcccccccaatgAATTGTAAATAAGAGAAATACTGATGCTTTTAAAGGAACTGTGTACCCGTATGTCTGTGGATGgatttagtggtgtggagggggTGTGGGTCAGACCTGATTTCGCCGATCTCACCTTTTTCTCGTAGACACATACACTCTGAGACATGttcaatacacacacagatacgtgCATACACAGTACAACCACCCTGTTATACAGTACAAGCACACACAATTCACCATGGTTCTTTTCATTCAGTTCTGTTGATACTTACATCTTGGTTAGTCAGCACTCCCTCTCTAATGTGCTcacaacatacatacacacagtattCCGTCCCACTGCTATCACCGGCATGACTGTGTCCAGTTCAGTAATGCAAACAATTGctatattatccacatggaaaGTAAACCACACAAAACGTTCCTGTCTTTGGTATAATAAATCTTACATTTG

Function

NR:

description
PH domain leucine-rich repeat-containing protein phosphatase 1-like

GO: NA

KEGG:

id description
K16340 PHLPP; PH domain and leucine-rich repeat-containing protein phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613493.2 True 6807 mRNA 0.53 17 69355850 69434566

Neighbor

gene id symbol gene type direction distance location
LOC110530432 LOC106569162 coding upstream 1157 69263522 ~ 69354693 (+)
LOC110530431 igfbp-3b1 coding upstream 207174 69135571 ~ 69148676 (+)
LOC110530428 LOC106569166 coding upstream 238855 69046411 ~ 69116995 (+)
LOC110530427 LOC106569165 coding upstream 310254 69019200 ~ 69045596 (+)
LOC110529135 NA coding upstream 349242 69005246 ~ 69006608 (+)
opn7a LOC106569157 coding downstream 73089 69507655 ~ 69520370 (+)
dusp22b LOC106569155 coding downstream 128420 69562986 ~ 69576816 (+)
LOC100499175 LOC106569154 coding downstream 144428 69578994 ~ 69591039 (+)
LOC110530440 foxq1 coding downstream 257723 69692289 ~ 69693962 (+)
foxf2a foxf2 coding downstream 265067 69699633 ~ 69703318 (+)
G739821 LOC106569164 non-coding upstream 163216 69181513 ~ 69192634 (+)
G739819 NA non-coding upstream 173404 69182116 ~ 69182446 (+)
G739802 NA non-coding upstream 208629 69145635 ~ 69147221 (+)
G739748 NA non-coding upstream 236729 69117563 ~ 69119121 (+)
G739746 NA non-coding upstream 309978 69045602 ~ 69045872 (+)
G739957 NA non-coding downstream 8801 69443367 ~ 69475441 (+)
G739958 NA non-coding downstream 9997 69444563 ~ 69450291 (+)
G740779 NA non-coding downstream 64404 69498970 ~ 69499192 (+)
G740783 NA non-coding downstream 67549 69502115 ~ 69502330 (+)
G740789 NA non-coding downstream 70691 69505257 ~ 69505543 (+)
G739708 NA other upstream 350734 69004337 ~ 69005116 (+)
G739670 NA other upstream 448885 68903365 ~ 68906965 (+)
G739648 NA other upstream 497097 68858383 ~ 68858753 (+)
LOC110530413 NA other upstream 1433228 67904516 ~ 67924427 (+)
G738244 NA other upstream 1808241 67546129 ~ 67547609 (+)
G740827 ripk1 other downstream 101834 69536400 ~ 69538276 (+)
G742095 NA other downstream 1191655 70626221 ~ 70626744 (+)
G742860 NA other downstream 2261036 71695602 ~ 71715616 (+)
LOC110530976 LOC106569323 other downstream 3108160 72542055 ~ 72555556 (+)
LOC110530502 LOC106569321 other downstream 3200318 72634238 ~ 72714065 (+)

Expression


Co-expression Network