opn7a (LOC106569157)


Basic Information

Item Value
gene id opn7a
gene name LOC106569157
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 69507655 ~ 69520370 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613496.2
GTgagggcgggaggtcctgtatgAACACTTTTACTTCCCAACAGCTCTGCGCTGGGAAGCGCAAGAAGTAAGAATGCCCGACTTGTACAGAAGCCATATCACTGTAAATGCCCCACGGTCAATGCAGACGTCAGATTGACCATGTGGCACCTTTAAAACAGATGGGCGTGTTAGCGAGCATTGACGACATTGCATTTCATTCAAACATACCCGTGGCAGCAGATATAACAGTAGCCATAGTGTATGCAGTGTTTGGCATGTGCTCTCTGTTTAGCAACAGCACACTGCTATACATCTCCTACAAAAAGAAGCACCTGCTCAAACCTGCTGAGTTCTTCATAATCAACCTGGCCATCAGCGACATGAGTCTAACCCTGTCCCTCTACCCCATGGCCATCACCTCCAGCATCTACCATAGgtGGCTGTTTGGGAAAACAGTGTGTTTGATCTACGCGTTCTGCGGCATGTTGTTTGGAGTCTGCAGTCTGACAACTCTCACCCTGTTGAGCATGGTGTGTTTTGTGAAAGTATGTTATCCTCTCTACGGTAACCGGTTCAACGCCGTCCACGGCCGTCTACTGATAGCCTGTGCTTGGGCTTGGGCCCTGGTGTTCGCCTGCTCCCCTCTGGCCCACTGGGGTGAGTATGGTCCGGAGCCCTACGGCACAGCCTGCTGCATCGACTGGCGCCTGTCCAACCTGCATCCCGTGGCCCGCTCCTACACGGCGGCGCTCTTTGTCTTGTGCTACATCGTGCCCTGCTGTGTCATCGTGGCGTCCTACACGGGCATCCTGATGACGGTCCGAGCCTCCCATAAGGCCATGGAGCATCACGAGGCCCGGCAGACCAAGATGAGCAACATCCAGGATGTTATTGTGAAGCTGAGTGTCGCTGTCTGTATCGGTTTCTTCGCAGCGTGGAGCCCTTATGCTGTGGTGTCGATGTGGGCAGCGTTCGGACACATGGATAACATCCCACCTTTGGCGTTCGCCGTGCCTGCCATGTTTGCTAAGTCCTCCACCATCTACAACCCCATTATCTACCTGCTGCTCAGGCCTAACTTCCGCAGGGTGATGTACCGAGACCTGGTGAGCCTTTGCAGGGCCTTTCTGAAGGGCTGCCTGTGCTCCTGCTCCCAGGGCGCTGTGGGGAAGTGCCACTCCCACTTGGTGGTCCGGGTCAGCCTCCAATCGTTCTGTAGACGTCTGGGCCACGGCCAGTCTTGTTCCCCCACCTCATCCGCCCGCCAAGCCCTGGGCGAGTCCAGAGGTTGCACTAGCCCCGGCGAGAAGTGCAGCGATGCCTTCGAGTGCTTCAGACACTACCCAAGAGGTTGCCATGGCGGTACCAACATCCCCAGCTCCTCAGCCAAAGTTTACGCACCTCAGGATCAGCTCTCAACAGAGCCCCAGCTGCAGTCGATGACTCAAAAACAGATGCGGAAGCAGGAAGCGTGTCATAAGAAGTCCCTGCGAGCCACCAAGCACAGCAAAAGGACCTCAGAAATCGACAACCTTCGGATCAACTTTGAGATGGTGCCGGGACACGCTAAAGTGGCCTGGCCCTAAAATGTTAAATATTCATTCTGGttttatagttttttttacatCTCTGGTCTATATTTGGCAGTTGATATATAAATAAATTCCATAATTTAAAACATGTTTATCTGTCAAGATAGACATTGAC
>XM_021613498.2
CTAGTAAGCTTTAAAAGGTGGACAGGACTGATTTCGATGAGTATAGCCCAATTCACACACAAGCACTATGCCACATTCCCAAGGACCGTTCACTTATGAGCGCTCAGCCTTTCGGAGACCCGTGTAGCTTATTGTTGTCTGCGCATATTTGACAACCAATTGAATTACCACCTGGGTTACCGCACCGCTGGACATGACCAATGTGGTATTATGGAGGCTAAATAACAGCATCTTCAGGTAACTTTCCGGGGCTTTCAAGCAACATACCTTACATCCAGCAGCACACTCTGACAAGATGGGCGTGTTAGCGAGCATTGACGACATTGCATTTCATTCAAACATACCCGTGGCAGCAGATATAACAGTAGCCATAGTGTATGCAGTGTTTGGCATGTGCTCTCTGTTTAGCAACAGCACACTGCTATACATCTCCTACAAAAAGAAGCACCTGCTCAAACCTGCTGAGTTCTTCATAATCAACCTGGCCATCAGCGACATGAGTCTAACCCTGTCCCTCTACCCCATGGCCATCACCTCCAGCATCTACCATAGgtGGCTGTTTGGGAAAACAGTGTGTTTGATCTACGCGTTCTGCGGCATGTTGTTTGGAGTCTGCAGTCTGACAACTCTCACCCTGTTGAGCATGGTGTGTTTTGTGAAAGTATGTTATCCTCTCTACGGTAACCGGTTCAACGCCGTCCACGGCCGTCTACTGATAGCCTGTGCTTGGGCTTGGGCCCTGGTGTTCGCCTGCTCCCCTCTGGCCCACTGGGGTGAGTATGGTCCGGAGCCCTACGGCACAGCCTGCTGCATCGACTGGCGCCTGTCCAACCTGCATCCCGTGGCCCGCTCCTACACGGCGGCGCTCTTTGTCTTGTGCTACATCGTGCCCTGCTGTGTCATCGTGGCGTCCTACACGGGCATCCTGATGACGGTCCGAGCCTCCCATAAGGCCATGGAGCATCACGAGGCCCGGCAGACCAAGATGAGCAACATCCAGGATGTTATTGTGAAGCTGAGTGTCGCTGTCTGTATCGGTTTCTTCGCAGCGTGGAGCCCTTATGCTGTGGTGTCGATGTGGGCAGCGTTCGGACACATGGATAACATCCCACCTTTGGCGTTCGCCGTGCCTGCCATGTTTGCTAAGTCCTCCACCATCTACAACCCCATTATCTACCTGCTGCTCAGGCCTAACTTCCGCAGGGTGATGTACCGAGACCTGGTGAGCCTTTGCAGGGCCTTTCTGAAGGGCTGCCTGTGCTCCTGCTCCCAGGGCGCTGTGGGGAAGTGCCACTCCCACTTGGTGGTCCGGGTCAGCCTCCAATCGTTCTGTAGACGTCTGGGCCACGGCCAGTCTTGTTCCCCCACCTCATCCGCCCGCCAAGCCCTGGGCGAGTCCAGAGGTTGCACTAGCCCCGGCGAGAAGTGCAGCGATGCCTTCGAGTGCTTCAGACACTACCCAAGAGGTTGCCATGGCGGTACCAACATCCCCAGCTCCTCAGCCAAAGTTTACGCACCTCAGGATCAGCTCTCAACAGAGCCCCAGCTGCAGTCGATGACTCAAAAACAGATGCGGAAGCAGGAAGCGTGTCATAAGAAGTCCCTGCGAGCCACCAAGCACAGCAAAAGGACCTCAGAAATCGACAACCTTCGGATCAACTTTGAGATGGTGCCGGGACACGCTAAAGTGGCCTGGCCCTAAAATGTTAAATATTCATTCTGGttttatagttttttttacatCTCTGGTCTATATTTGGCAGTTGATATATAAATAAATTCCATAATTTAAAACATGTTTATCTGTCAAGATAGACATTGAC
>XM_036986067.1
CTAGTAAGCTTTAAAAGGTGGACAGGACTGATTTCGATGAGTATAGCCCAATTCACACACAAGCACTATGCCACATTCCCAAGGACCGTTCACTTATGAGCGCTCAGCCTTTCGGAGACCCGTGTAGCTTATTGTTGTCTGCGCATATTTGACAACCAATTGAATTACCACCTGGGTTACCGCACCGCTGGACATGACCAATGTGGTATTATGGAGGCTAAATAACAGCATCTTCAGATGGGCGTGTTAGCGAGCATTGACGACATTGCATTTCATTCAAACATACCCGTGGCAGCAGATATAACAGTAGCCATAGTGTATGCAGTGTTTGGCATGTGCTCTCTGTTTAGCAACAGCACACTGCTATACATCTCCTACAAAAAGAAGCACCTGCTCAAACCTGCTGAGTTCTTCATAATCAACCTGGCCATCAGCGACATGAGTCTAACCCTGTCCCTCTACCCCATGGCCATCACCTCCAGCATCTACCATAGgtGGCTGTTTGGGAAAACAGTGTGTTTGATCTACGCGTTCTGCGGCATGTTGTTTGGAGTCTGCAGTCTGACAACTCTCACCCTGTTGAGCATGGTGTGTTTTGTGAAAGTATGTTATCCTCTCTACGGTAACCGGTTCAACGCCGTCCACGGCCGTCTACTGATAGCCTGTGCTTGGGCTTGGGCCCTGGTGTTCGCCTGCTCCCCTCTGGCCCACTGGGGTGAGTATGGTCCGGAGCCCTACGGCACAGCCTGCTGCATCGACTGGCGCCTGTCCAACCTGCATCCCGTGGCCCGCTCCTACACGGCGGCGCTCTTTGTCTTGTGCTACATCGTGCCCTGCTGTGTCATCGTGGCGTCCTACACGGGCATCCTGATGACGGTCCGAGCCTCCCATAAGGCCATGGAGCATCACGAGGCCCGGCAGACCAAGATGAGCAACATCCAGGATGTTATTGTGAAGCTGAGTGTCGCTGTCTGTATCGGTTTCTTCGCAGCGTGGAGCCCTTATGCTGTGGTGTCGATGTGGGCAGCGTTCGGACACATGGATAACATCCCACCTTTGGCGTTCGCCGTGCCTGCCATGTTTGCTAAGTCCTCCACCATCTACAACCCCATTATCTACCTGCTGCTCAGGCCTAACTTCCGCAGGGTGATGTACCGAGACCTGGTGAGCCTTTGCAGGGCCTTTCTGAAGGGCTGCCTGTGCTCCTGCTCCCAGGGCGCTGTGGGGAAGTGCCACTCCCACTTGGTGGTCCGGGTCAGCCTCCAATCGTTCTGTAGACGTCTGGGCCACGGCCAGTCTTGTTCCCCCACCTCATCCGCCCGCCAAGCCCTGGGCGAGTCCAGAGGTTGCACTAGCCCCGGCGAGAAGTGCAGCGATGCCTTCGAGTGCTTCAGACACTACCCAAGAGGTTGCCATGGCGGTACCAACATCCCCAGCTCCTCAGCCAAAGTTTACGCACCTCAGGATCAGCTCTCAACAGAGCCCCAGCTGCAGTCGATGACTCAAAAACAGATGCGGAAGCAGGAAGCGTGTCATAAGAAGTCCCTGCGAGCCACCAAGCACAGCAAAAGGACCTCAGAAATCGACAACCTTCGGATCAACTTTGAGATGGTGCCGGGACACGCTAAAGTGGCCTGGCCCTAAAATGTTAAATATTCATTCTGGttttatagttttttttacatCTCTGGTCTATATTTGGCAGTTGATATATAAATAAATTCCATAATTTAAAACATGTTTATCTGTCAAGATAGACATTGAC
>XM_036986066.1
ATTAATTACCTTTCAGAGTTGACGTGTTCTGCTTTTAAATGAAGCTCAAGGCTTGAACGGAGTTAAATTGGATTATGGGCGTGTTAGCGAGCATTGACGACATTGCATTTCATTCAAACATACCCGTGGCAGCAGATATAACAGTAGCCATAGTGTATGCAGTGTTTGGCATGTGCTCTCTGTTTAGCAACAGCACACTGCTATACATCTCCTACAAAAAGAAGCACCTGCTCAAACCTGCTGAGTTCTTCATAATCAACCTGGCCATCAGCGACATGAGTCTAACCCTGTCCCTCTACCCCATGGCCATCACCTCCAGCATCTACCATAGgtGGCTGTTTGGGAAAACAGTGTGTTTGATCTACGCGTTCTGCGGCATGTTGTTTGGAGTCTGCAGTCTGACAACTCTCACCCTGTTGAGCATGGTGTGTTTTGTGAAAGTATGTTATCCTCTCTACGGTAACCGGTTCAACGCCGTCCACGGCCGTCTACTGATAGCCTGTGCTTGGGCTTGGGCCCTGGTGTTCGCCTGCTCCCCTCTGGCCCACTGGGGTGAGTATGGTCCGGAGCCCTACGGCACAGCCTGCTGCATCGACTGGCGCCTGTCCAACCTGCATCCCGTGGCCCGCTCCTACACGGCGGCGCTCTTTGTCTTGTGCTACATCGTGCCCTGCTGTGTCATCGTGGCGTCCTACACGGGCATCCTGATGACGGTCCGAGCCTCCCATAAGGCCATGGAGCATCACGAGGCCCGGCAGACCAAGATGAGCAACATCCAGGATGTTATTGTGAAGCTGAGTGTCGCTGTCTGTATCGGTTTCTTCGCAGCGTGGAGCCCTTATGCTGTGGTGTCGATGTGGGCAGCGTTCGGACACATGGATAACATCCCACCTTTGGCGTTCGCCGTGCCTGCCATGTTTGCTAAGTCCTCCACCATCTACAACCCCATTATCTACCTGCTGCTCAGGCCTAACTTCCGCAGGGTGATGTACCGAGACCTGGTGAGCCTTTGCAGGGCCTTTCTGAAGGGCTGCCTGTGCTCCTGCTCCCAGGGCGCTGTGGGGAAGTGCCACTCCCACTTGGTGGTCCGGGTCAGCCTCCAATCGTTCTGTAGACGTCTGGGCCACGGCCAGTCTTGTTCCCCCACCTCATCCGCCCGCCAAGCCCTGGGCGAGTCCAGAGGTTGCACTAGCCCCGGCGAGAAGTGCAGCGATGCCTTCGAGTGCTTCAGACACTACCCAAGAGGTTGCCATGGCGGTACCAACATCCCCAGCTCCTCAGCCAAAGTTTACGCACCTCAGGATCAGCTCTCAACAGAGCCCCAGCTGCAGTCGATGACTCAAAAACAGATGCGGAAGCAGGAAGCGTGTCATAAGAAGTCCCTGCGAGCCACCAAGCACAGCAAAAGGACCTCAGAAATCGACAACCTTCGGATCAACTTTGAGATGGTGCCGGGACACGCTAAAGTGGCCTGGCCCTAAAATGTTAAATATTCATTCTGGttttatagttttttttacatCTCTGGTCTATATTTGGCAGTTGATATATAAATAAATTCCATAATTTAAAACATGTTTATCTGTCAAGATAGACATTGAC

Function

NR:

description
opsin-5-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613496.2 False 1689 mRNA 0.53 6 69507655 69520370
XM_021613498.2 False 1823 mRNA 0.52 6 69509305 69520370
XM_036986067.1 False 1765 mRNA 0.52 6 69509305 69520370
XM_036986066.1 True 1602 mRNA 0.53 6 69510096 69520370

Neighbor

gene id symbol gene type direction distance location
LOC110530434 LOC106569160 coding upstream 73089 69355850 ~ 69434566 (+)
LOC110530432 LOC106569162 coding upstream 152962 69263522 ~ 69354693 (+)
LOC110530431 igfbp-3b1 coding upstream 358979 69135571 ~ 69148676 (+)
LOC110530428 LOC106569166 coding upstream 390660 69046411 ~ 69116995 (+)
LOC110530427 LOC106569165 coding upstream 462059 69019200 ~ 69045596 (+)
dusp22b LOC106569155 coding downstream 42616 69562986 ~ 69576816 (+)
LOC100499175 LOC106569154 coding downstream 58624 69578994 ~ 69591039 (+)
LOC110530440 foxq1 coding downstream 171919 69692289 ~ 69693962 (+)
foxf2a foxf2 coding downstream 179263 69699633 ~ 69703318 (+)
LOC110530442 foxc1 coding downstream 204957 69725327 ~ 69727474 (+)
G740790 NA non-coding upstream 1693 69505749 ~ 69505962 (+)
G740789 NA non-coding upstream 2112 69505257 ~ 69505543 (+)
G740783 NA non-coding upstream 5325 69502115 ~ 69502330 (+)
G740779 NA non-coding upstream 8463 69498970 ~ 69499192 (+)
G739957 NA non-coding upstream 32214 69443367 ~ 69475441 (+)
G740839 ripk1 non-coding downstream 31082 69551452 ~ 69553671 (+)
G740840 NA non-coding downstream 33415 69553785 ~ 69554031 (+)
G741094 NA non-coding downstream 218753 69739123 ~ 69739334 (+)
G741104 NA non-coding downstream 224720 69745090 ~ 69745594 (+)
G741109 NA non-coding downstream 243713 69764083 ~ 69764429 (+)
G739708 NA other upstream 502539 69004337 ~ 69005116 (+)
G739670 NA other upstream 600690 68903365 ~ 68906965 (+)
G739648 NA other upstream 648902 68858383 ~ 68858753 (+)
LOC110530413 NA other upstream 1585033 67904516 ~ 67924427 (+)
G738244 NA other upstream 1960046 67546129 ~ 67547609 (+)
G740827 ripk1 other downstream 16030 69536400 ~ 69538276 (+)
G742095 NA other downstream 1105851 70626221 ~ 70626744 (+)
G742860 NA other downstream 2175232 71695602 ~ 71715616 (+)
LOC110530976 LOC106569323 other downstream 3022356 72542055 ~ 72555556 (+)
LOC110530502 LOC106569321 other downstream 3114514 72634238 ~ 72714065 (+)

Expression


Co-expression Network